Wall clock time and date at job start Wed Apr 1 2020 02:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47271 * 2 1 4 4 C 1.38255 * 119.99721 * 264.97563 * 3 2 1 5 5 C 1.38219 * 119.99702 * 179.97438 * 4 3 2 6 6 C 1.38251 * 120.00076 * 0.02562 * 5 4 3 7 7 C 1.38216 * 119.99905 * 359.76273 * 6 5 4 8 8 C 1.38214 * 119.99872 * 85.00024 * 3 2 1 9 9 C 1.50694 * 120.00179 * 359.97438 * 8 3 2 10 10 C 1.50698 * 109.47245 * 85.00007 * 9 8 3 11 11 O 1.21279 * 119.99983 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00026 * 179.97438 * 10 9 8 13 13 C 1.44475 * 117.13960 * 0.02562 * 12 10 9 14 14 C 1.50981 * 113.13503 * 148.25452 * 13 12 10 15 15 C 1.48610 * 116.02990 * 32.06907 * 14 13 12 16 16 H 1.09001 * 105.76847 * 206.05511 * 15 14 13 17 17 C 1.53316 * 114.95611 * 90.61482 * 15 14 13 18 18 C 1.54523 * 102.38583 * 196.31546 * 17 15 14 19 19 N 1.46887 * 106.66139 * 27.58538 * 18 17 15 20 20 C 1.36941 * 125.35726 * 164.84705 * 19 18 17 21 21 H 1.07994 * 120.00002 * 180.02562 * 20 19 18 22 22 C 1.38821 * 119.99784 * 0.02598 * 20 19 18 23 23 N 1.31610 * 119.99865 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99611 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47226 * 59.99774 * 24 22 20 26 26 H 1.48497 * 109.47136 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47079 * 300.00009 * 24 22 20 28 28 C 1.48591 * 109.25537 * 344.79974 * 19 18 17 29 29 H 1.08997 * 109.83777 * 237.31705 * 28 19 18 30 30 C 1.43937 * 117.14014 * 180.02562 * 12 10 9 31 31 H 1.09001 * 109.47233 * 300.00622 * 1 2 3 32 32 H 1.08999 * 109.47250 * 60.00080 * 1 2 3 33 33 H 1.09001 * 109.47642 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47233 * 239.99378 * 2 1 3 35 35 H 1.09000 * 109.46508 * 119.99917 * 2 1 3 36 36 H 1.08000 * 120.00264 * 359.97438 * 4 3 2 37 37 H 1.07996 * 119.99538 * 180.02562 * 5 4 3 38 38 H 1.07998 * 120.00172 * 179.97438 * 6 5 4 39 39 H 1.07997 * 120.00015 * 180.25576 * 7 6 5 40 40 H 1.09001 * 109.47272 * 324.99804 * 9 8 3 41 41 H 1.09005 * 109.47158 * 205.00753 * 9 8 3 42 42 H 1.09001 * 108.75256 * 269.19805 * 13 12 10 43 43 H 1.09007 * 108.74893 * 27.43104 * 13 12 10 44 44 H 1.09004 * 108.17057 * 153.77455 * 14 13 12 45 45 H 1.09003 * 108.17060 * 270.36915 * 14 13 12 46 46 H 1.09004 * 110.82815 * 314.53851 * 17 15 14 47 47 H 1.09004 * 110.82536 * 77.89327 * 17 15 14 48 48 H 1.09002 * 110.02111 * 146.88703 * 18 17 15 49 49 H 1.09001 * 110.02047 * 268.23833 * 18 17 15 50 50 H 0.97002 * 119.99986 * 180.02562 * 23 22 20 51 51 H 1.09002 * 108.42046 * 332.81904 * 30 12 10 52 52 H 1.08999 * 108.41988 * 90.24126 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3616 2.0375 -1.1928 5 6 2.8219 3.3408 -1.1928 6 6 2.9535 4.0275 -0.0001 7 6 2.6201 3.4124 1.1919 8 6 2.1643 2.1071 1.1924 9 6 1.8054 1.4348 2.4925 10 6 2.9842 0.6373 2.9878 11 8 4.0145 0.6172 2.3484 12 7 2.8938 -0.0528 4.1420 13 6 1.6383 0.0149 4.8537 14 6 1.3198 -1.2487 5.6161 15 6 2.4856 -1.9987 6.1518 16 1 2.1596 -3.0358 6.2310 17 6 2.9114 -1.6049 7.5710 18 6 4.3313 -2.2064 7.6699 19 7 4.8667 -2.2492 6.3027 20 6 6.1829 -2.4331 5.9725 21 1 6.4821 -2.4496 4.9350 22 6 7.1326 -2.5985 6.9715 23 7 6.7679 -2.5780 8.2359 24 14 8.9281 -2.8487 6.5210 25 1 9.4145 -1.6735 5.7545 26 1 9.7328 -2.9999 7.7599 27 1 9.0642 -4.0722 5.6905 28 6 3.7547 -2.0626 5.3349 29 1 3.7122 -2.9113 4.6523 30 6 4.0564 -0.7926 4.5574 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8932 -0.5138 0.8900 36 1 2.2592 1.5010 -2.1244 37 1 3.0787 3.8227 -2.1246 38 1 3.3135 5.0457 -0.0001 39 1 2.7190 3.9502 2.1232 40 1 0.9567 0.7692 2.3351 41 1 1.5417 2.1911 3.2319 42 1 1.6782 0.8473 5.5562 43 1 0.8386 0.2005 4.1366 44 1 0.6708 -0.9870 6.4519 45 1 0.7627 -1.9131 4.9554 46 1 2.9414 -0.5207 7.6799 47 1 2.2468 -2.0488 8.3122 48 1 4.9609 -1.5756 8.2976 49 1 4.2820 -3.2135 8.0838 50 1 7.4315 -2.6931 8.9340 51 1 4.6297 -1.0602 3.6698 52 1 4.6723 -0.1447 5.1811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042112085.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:46 Heat of formation + Delta-G solvation = 15.140596 kcal Electronic energy + Delta-G solvation = -30925.144436 eV Core-core repulsion = 27082.836164 eV Total energy + Delta-G solvation = -3842.308272 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.64633 -39.48070 -38.07714 -35.43272 -34.42431 -33.18724 -32.74040 -31.52920 -29.80267 -29.45308 -28.67157 -27.46027 -24.85317 -24.15964 -23.74640 -22.65868 -22.08084 -20.81351 -20.32583 -19.48920 -17.48856 -17.09141 -16.90756 -16.49677 -16.23042 -15.55956 -15.15258 -15.10318 -14.84832 -14.67540 -14.04029 -13.98489 -13.82025 -13.65898 -13.40769 -13.13463 -13.04181 -12.80727 -12.50988 -12.30173 -12.16778 -11.98664 -11.89392 -11.72360 -11.52802 -11.42398 -11.30917 -11.05910 -10.88698 -10.83599 -10.75325 -10.70111 -10.11676 -9.94608 -9.90770 -9.61846 -9.56314 -9.52955 -8.82337 -8.62905 -8.58733 -8.17293 -6.88335 -5.68001 -3.06064 1.29764 1.37095 2.84547 3.30927 3.43790 3.47443 3.49346 3.76517 4.48497 4.54266 4.64550 4.71606 4.81769 4.84616 4.92942 4.95504 5.04046 5.08815 5.14244 5.22510 5.29166 5.36170 5.39018 5.46523 5.48890 5.55171 5.59090 5.59552 5.75625 5.79286 5.80041 5.87789 5.94329 5.99974 6.04470 6.07313 6.12703 6.19635 6.26046 6.43099 6.46079 6.49404 6.59349 6.60583 6.61603 6.87833 6.96721 6.98851 7.11829 7.54290 7.62298 7.68207 7.85089 8.29543 8.47158 9.22570 9.81196 10.44788 11.39362 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.003051 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.405906 B = 9174.438812 C =10310.978983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.064 4.064 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.125 4.125 7 C -0.105 4.105 8 C -0.059 4.059 9 C -0.106 4.106 10 C 0.500 3.500 11 O -0.530 6.530 12 N -0.591 5.591 13 C 0.114 3.886 14 C -0.107 4.107 15 C -0.092 4.092 16 H 0.055 0.945 17 C -0.136 4.136 18 C 0.167 3.833 19 N -0.596 5.596 20 C -0.227 4.227 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.165 3.835 29 H 0.041 0.959 30 C 0.105 3.895 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.060 0.940 48 H 0.083 0.917 49 H 0.019 0.981 50 H 0.252 0.748 51 H 0.075 0.925 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.592 9.492 -12.468 23.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.064 4.064 4 C -0.137 4.137 5 C -0.139 4.139 6 C -0.143 4.143 7 C -0.123 4.123 8 C -0.060 4.060 9 C -0.146 4.146 10 C 0.287 3.713 11 O -0.407 6.407 12 N -0.324 5.324 13 C -0.010 4.010 14 C -0.146 4.146 15 C -0.112 4.112 16 H 0.074 0.926 17 C -0.175 4.175 18 C 0.042 3.958 19 N -0.321 5.321 20 C -0.355 4.355 21 H 0.096 0.904 22 C -0.203 4.203 23 N -0.570 5.570 24 Si 0.742 3.258 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.057 3.943 29 H 0.059 0.941 30 C -0.020 4.020 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.101 0.899 49 H 0.037 0.963 50 H 0.063 0.937 51 H 0.093 0.907 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.808 9.362 -12.602 22.999 hybrid contribution 1.019 -0.208 -0.075 1.042 sum -15.789 9.154 -12.677 22.221 Atomic orbital electron populations 1.21767 0.94749 1.01790 1.02034 1.20570 0.95869 0.92928 1.03306 1.19659 0.98416 0.95671 0.92623 1.20961 1.00264 0.95184 0.97297 1.21077 0.99972 0.94859 0.97959 1.21047 1.00738 0.99955 0.92575 1.20976 0.98655 0.94512 0.98156 1.19161 0.99696 0.93918 0.93201 1.20832 0.97977 0.99981 0.95801 1.20559 0.89394 0.80485 0.80864 1.90721 1.31065 1.62586 1.56281 1.46830 1.14217 1.48615 1.22752 1.20705 0.85503 0.98715 0.96081 1.20324 0.98182 0.96180 0.99895 1.20017 0.94499 1.00065 0.96570 0.92606 1.22665 1.00005 1.00421 0.94366 1.21403 0.88705 0.98449 0.87223 1.44866 1.02170 1.84873 1.00232 1.19024 0.81487 1.42326 0.92664 0.90440 1.24774 0.98171 1.02019 0.95295 1.69916 1.32283 1.56539 0.98252 0.86189 0.84499 0.78151 0.76920 1.21031 1.21601 1.21156 1.20367 0.88247 0.93979 0.91731 0.94099 1.21600 0.85516 0.94649 1.00205 0.92567 0.92538 0.92265 0.90998 0.90883 0.86312 0.86353 0.86270 0.86266 0.87933 0.88283 0.92488 0.90774 0.90674 0.92155 0.92603 0.92166 0.89934 0.96262 0.93731 0.90699 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.72 37.16 0.36 -0.82 16 2 C -0.09 -0.95 5.38 -27.89 -0.15 -1.10 16 3 C -0.06 -0.76 5.13 -104.62 -0.54 -1.30 16 4 C -0.12 -1.32 9.68 -39.58 -0.38 -1.70 16 5 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 6 C -0.13 -1.36 10.05 -39.58 -0.40 -1.76 16 7 C -0.10 -1.25 9.68 -39.58 -0.38 -1.63 16 8 C -0.06 -0.74 4.37 -104.63 -0.46 -1.19 16 9 C -0.11 -1.20 3.55 -29.04 -0.10 -1.30 16 10 C 0.50 7.90 6.75 -10.99 -0.07 7.83 16 11 O -0.53 -10.71 15.23 5.56 0.08 -10.63 16 12 N -0.59 -9.31 3.13 -179.15 -0.56 -9.87 16 13 C 0.11 1.33 5.94 -6.14 -0.04 1.29 16 14 C -0.11 -1.29 5.54 -29.89 -0.17 -1.46 16 15 C -0.09 -1.52 2.31 -93.58 -0.22 -1.74 16 16 H 0.06 0.93 8.01 -51.93 -0.42 0.51 16 17 C -0.14 -2.44 6.47 -25.77 -0.17 -2.61 16 18 C 0.17 3.98 5.53 -3.03 -0.02 3.96 16 19 N -0.60 -14.97 2.91 -164.53 -0.48 -15.45 16 20 C -0.23 -6.32 9.82 -15.05 -0.15 -6.47 16 21 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 22 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 23 N -0.92 -26.93 10.23 55.49 0.57 -26.36 16 24 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 28 C 0.16 3.36 3.57 -68.29 -0.24 3.12 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 30 C 0.10 2.09 5.38 -5.94 -0.03 2.06 16 31 H 0.06 0.42 6.80 -51.93 -0.35 0.07 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 35 H 0.07 0.90 6.42 -51.93 -0.33 0.56 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 40 H 0.10 0.94 4.69 -51.93 -0.24 0.69 16 41 H 0.10 0.90 7.93 -51.93 -0.41 0.49 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.63 5.87 -51.93 -0.30 0.33 16 44 H 0.07 0.76 7.94 -51.93 -0.41 0.35 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.08 2.22 6.43 -51.93 -0.33 1.89 16 49 H 0.02 0.50 8.12 -51.93 -0.42 0.08 16 50 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 51 H 0.07 1.65 6.98 -51.93 -0.36 1.29 16 52 H 0.07 1.54 7.84 -51.93 -0.41 1.14 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -32.98 397.21 -11.68 -44.66 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.61 Total: 0.95 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -3.64 Total: -6.78 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.47 Total: -51.68 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.63 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.98 -11.68 -44.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042112085.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.804 kcal (2) G-P(sol) polarization free energy of solvation -32.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds