Wall clock time and date at job start Wed Apr 1 2020 02:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47246 * 2 1 4 4 C 1.38258 * 119.99915 * 264.99420 * 3 2 1 5 5 C 1.38211 * 119.99593 * 179.71874 * 4 3 2 6 6 C 1.38259 * 120.00444 * 0.26285 * 5 4 3 7 7 C 1.38211 * 119.99534 * 0.02562 * 6 5 4 8 8 C 1.38220 * 120.00050 * 85.25379 * 3 2 1 9 9 C 1.50697 * 119.99712 * 0.04398 * 8 3 2 10 10 C 1.50699 * 109.47372 * 85.23723 * 9 8 3 11 11 O 1.21281 * 120.00070 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99920 * 179.97438 * 10 9 8 13 13 C 1.46593 * 119.75585 * 359.97438 * 12 10 9 14 14 C 1.53887 * 110.70644 * 227.74868 * 13 12 10 15 15 C 1.51975 * 107.29618 * 308.18459 * 14 13 12 16 16 H 1.09011 * 111.01524 * 303.47968 * 15 14 13 17 17 C 1.53698 * 115.00852 * 176.26110 * 15 14 13 18 18 C 1.56174 * 101.41494 * 206.98803 * 17 15 14 19 19 N 1.48158 * 107.34992 * 21.45496 * 18 17 15 20 20 C 1.36930 * 126.40229 * 185.60973 * 19 18 17 21 21 H 1.07996 * 120.00252 * 173.06576 * 20 19 18 22 22 C 1.38815 * 119.99676 * 353.06940 * 20 19 18 23 23 N 1.31611 * 120.00245 * 5.76811 * 22 20 19 24 24 Si 1.86807 * 119.99878 * 185.77248 * 22 20 19 25 25 H 1.48493 * 109.47332 * 94.98530 * 24 22 20 26 26 H 1.48503 * 109.46968 * 214.98685 * 24 22 20 27 27 H 1.48503 * 109.46743 * 334.98665 * 24 22 20 28 28 C 1.45506 * 107.20194 * 5.61235 * 19 18 17 29 29 H 1.08997 * 109.57020 * 86.62090 * 28 19 18 30 30 C 1.47804 * 119.75324 * 179.72592 * 12 10 9 31 31 H 1.09000 * 109.46593 * 60.00615 * 1 2 3 32 32 H 1.09004 * 109.47262 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47251 * 300.00055 * 1 2 3 34 34 H 1.09002 * 109.47707 * 239.99769 * 2 1 3 35 35 H 1.09007 * 109.46754 * 120.00234 * 2 1 3 36 36 H 1.08001 * 120.00202 * 0.02562 * 4 3 2 37 37 H 1.08008 * 120.00011 * 180.28016 * 5 4 3 38 38 H 1.07993 * 119.99869 * 179.97438 * 6 5 4 39 39 H 1.08001 * 119.99818 * 179.97438 * 7 6 5 40 40 H 1.09003 * 109.46842 * 205.23428 * 9 8 3 41 41 H 1.08999 * 109.47428 * 325.23471 * 9 8 3 42 42 H 1.08997 * 109.23239 * 348.06689 * 13 12 10 43 43 H 1.08998 * 109.22949 * 107.43644 * 13 12 10 44 44 H 1.08997 * 109.89524 * 67.63091 * 14 13 12 45 45 H 1.09003 * 109.89388 * 188.66381 * 14 13 12 46 46 H 1.09002 * 110.95861 * 324.66072 * 17 15 14 47 47 H 1.08997 * 110.96428 * 88.39896 * 17 15 14 48 48 H 1.08994 * 109.26870 * 262.28884 * 18 17 15 49 49 H 1.09002 * 110.44281 * 141.27803 * 18 17 15 50 50 H 0.96998 * 120.00416 * 180.02562 * 23 22 20 51 51 H 1.09002 * 110.06271 * 247.96154 * 30 12 10 52 52 H 1.09001 * 110.06549 * 9.52491 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3613 2.0377 -1.1928 5 6 2.8165 3.3427 -1.1932 6 6 2.9481 4.0294 -0.0005 7 6 2.6249 3.4107 1.1924 8 6 2.1694 2.1054 1.1929 9 6 1.8173 1.4306 2.4936 10 6 3.0012 0.6382 2.9850 11 8 4.0295 0.6225 2.3421 12 7 2.9173 -0.0530 4.1389 13 6 1.6720 -0.0299 4.9120 14 6 1.9590 0.2506 6.3976 15 6 3.0197 -0.7403 6.8478 16 1 2.6973 -1.7662 6.6690 17 6 3.5076 -0.5577 8.2938 18 6 4.9515 -1.1468 8.2095 19 7 5.3633 -1.1052 6.7869 20 6 6.5153 -1.6240 6.2590 21 1 6.6618 -1.6352 5.1890 22 6 7.4948 -2.1356 7.0990 23 7 7.2705 -2.2267 8.3927 24 14 9.1316 -2.6947 6.3933 25 1 10.1189 -1.5905 6.4978 26 1 9.6227 -3.8715 7.1545 27 1 8.9543 -3.0668 4.9666 28 6 4.3149 -0.4101 6.0556 29 1 4.4979 0.6640 6.0877 30 6 4.0797 -0.8333 4.6128 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 2.2578 1.5015 -2.1246 37 1 3.0692 3.8262 -2.1254 38 1 3.3042 5.0489 -0.0009 39 1 2.7281 3.9469 2.1241 40 1 1.5524 2.1852 3.2343 41 1 0.9712 0.7612 2.3383 42 1 1.0198 0.7500 4.5189 43 1 1.1735 -0.9947 4.8186 44 1 2.3280 1.2690 6.5183 45 1 1.0498 0.1139 6.9833 46 1 3.5362 0.4976 8.5653 47 1 2.8855 -1.1209 8.9894 48 1 4.9405 -2.1778 8.5630 49 1 5.6399 -0.5550 8.8128 50 1 7.9551 -2.5838 8.9797 51 1 3.8592 -1.8997 4.5642 52 1 4.9563 -0.6036 4.0070 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042112087.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:54 Heat of formation + Delta-G solvation = 10.301809 kcal Electronic energy + Delta-G solvation = -30773.261955 eV Core-core repulsion = 26930.743857 eV Total energy + Delta-G solvation = -3842.518097 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.51433 -39.42743 -38.00165 -35.32989 -34.43670 -32.89622 -32.70469 -31.22551 -29.82441 -29.44325 -28.56215 -27.31657 -24.69004 -24.07312 -23.60963 -22.26073 -22.05723 -20.76989 -20.10000 -19.66734 -18.78331 -17.07480 -16.63672 -16.42726 -16.16619 -15.53547 -15.13992 -14.85618 -14.72029 -14.33523 -14.03229 -13.92000 -13.73207 -13.58249 -13.42990 -13.13719 -13.04621 -12.81908 -12.72740 -12.25385 -12.20265 -12.05431 -11.92544 -11.83220 -11.50993 -11.42670 -11.29686 -10.95959 -10.89427 -10.80242 -10.78571 -10.73459 -10.12389 -9.96358 -9.84450 -9.69746 -9.61315 -9.46317 -8.83729 -8.62883 -8.60475 -8.38235 -6.83253 -5.72316 -3.05072 1.27891 1.35737 2.81208 3.15490 3.42965 3.48997 3.50558 3.72870 4.50675 4.52877 4.63439 4.71354 4.77500 4.85031 4.89905 4.99679 5.02643 5.10953 5.15701 5.21205 5.26813 5.36528 5.41107 5.45116 5.49240 5.53302 5.60482 5.66782 5.73873 5.77065 5.78085 5.90234 5.93081 6.00548 6.03541 6.07859 6.10435 6.12891 6.17128 6.39069 6.41483 6.44853 6.49596 6.56044 6.59479 6.72399 6.76372 6.95775 7.06979 7.55733 7.60041 7.63239 7.81992 8.23987 8.39304 9.20032 9.83045 10.50304 11.40730 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013294 B = 0.002973 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.741878 B = 9415.055667 C =10452.460326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.064 4.064 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.104 4.104 8 C -0.060 4.060 9 C -0.106 4.106 10 C 0.512 3.488 11 O -0.531 6.531 12 N -0.608 5.608 13 C 0.108 3.892 14 C -0.120 4.120 15 C -0.112 4.112 16 H 0.076 0.924 17 C -0.139 4.139 18 C 0.178 3.822 19 N -0.592 5.592 20 C -0.229 4.229 21 H 0.079 0.921 22 C -0.005 4.005 23 N -0.920 5.920 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.157 3.843 29 H 0.024 0.976 30 C 0.116 3.884 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.055 0.945 47 H 0.060 0.940 48 H 0.048 0.952 49 H 0.043 0.957 50 H 0.252 0.748 51 H 0.068 0.932 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.542 8.747 -12.636 24.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 C -0.064 4.064 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.143 4.143 7 C -0.122 4.122 8 C -0.060 4.060 9 C -0.145 4.145 10 C 0.299 3.701 11 O -0.407 6.407 12 N -0.343 5.343 13 C -0.016 4.016 14 C -0.159 4.159 15 C -0.132 4.132 16 H 0.094 0.906 17 C -0.177 4.177 18 C 0.054 3.946 19 N -0.317 5.317 20 C -0.357 4.357 21 H 0.097 0.903 22 C -0.201 4.201 23 N -0.567 5.567 24 Si 0.739 3.261 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.205 1.205 28 C 0.048 3.952 29 H 0.041 0.959 30 C -0.006 4.006 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.066 0.934 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.086 0.914 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.763 8.601 -12.889 23.572 hybrid contribution 0.971 -0.279 -0.150 1.021 sum -16.793 8.322 -13.039 22.831 Atomic orbital electron populations 1.21766 0.94740 1.01771 1.02060 1.20568 0.95878 0.92935 1.03256 1.19658 0.98437 0.95678 0.92630 1.20959 1.00270 0.95184 0.97291 1.21084 0.99941 0.94819 0.97976 1.21053 1.00718 0.99961 0.92552 1.20978 0.98596 0.94482 0.98184 1.19147 0.99786 0.93952 0.93147 1.20800 0.97899 1.00063 0.95767 1.20431 0.89302 0.79570 0.80828 1.90731 1.31242 1.62707 1.55997 1.48307 1.14719 1.49086 1.22147 1.21735 0.85574 1.01786 0.92464 1.21812 0.99571 1.00199 0.94304 1.22256 0.95437 0.98570 0.96923 0.90610 1.22858 0.99522 1.00281 0.95026 1.21671 0.88450 0.99306 0.85202 1.44153 1.18505 1.65718 1.03325 1.19045 0.91970 1.32968 0.91693 0.90285 1.24800 0.98373 1.01459 0.95509 1.69948 1.33440 1.51014 1.02316 0.86146 0.84117 0.77804 0.78060 1.21583 1.21777 1.20508 1.21053 0.88527 0.95311 0.90273 0.95897 1.21809 0.87732 0.94410 0.96646 0.92525 0.92293 0.92552 0.91001 0.90936 0.86307 0.86333 0.86237 0.86241 0.88209 0.88002 0.90401 0.91705 0.91423 0.90873 0.92577 0.92154 0.93416 0.93867 0.93763 0.91374 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.72 37.16 0.36 -0.79 16 2 C -0.09 -0.92 5.38 -27.88 -0.15 -1.07 16 3 C -0.06 -0.76 5.13 -104.62 -0.54 -1.29 16 4 C -0.12 -1.30 9.68 -39.58 -0.38 -1.69 16 5 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 6 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 7 C -0.10 -1.24 9.68 -39.59 -0.38 -1.62 16 8 C -0.06 -0.73 4.37 -104.63 -0.46 -1.19 16 9 C -0.11 -1.16 3.49 -29.04 -0.10 -1.27 16 10 C 0.51 7.89 6.89 -10.99 -0.08 7.82 16 11 O -0.53 -10.55 15.40 5.56 0.09 -10.47 16 12 N -0.61 -9.17 3.00 -172.49 -0.52 -9.69 16 13 C 0.11 1.20 6.22 -3.53 -0.02 1.18 16 14 C -0.12 -1.47 5.72 -26.79 -0.15 -1.62 16 15 C -0.11 -1.86 2.57 -89.51 -0.23 -2.09 16 16 H 0.08 1.29 8.13 -51.92 -0.42 0.87 16 17 C -0.14 -2.48 6.63 -24.67 -0.16 -2.64 16 18 C 0.18 4.26 5.46 -1.43 -0.01 4.25 16 19 N -0.59 -14.98 3.35 -162.11 -0.54 -15.52 16 20 C -0.23 -6.39 9.89 -15.06 -0.15 -6.54 16 21 H 0.08 2.18 7.37 -52.49 -0.39 1.79 16 22 C 0.00 -0.14 5.49 -17.43 -0.10 -0.24 16 23 N -0.92 -27.07 10.48 55.49 0.58 -26.49 16 24 Si 0.91 22.54 29.56 -169.99 -5.02 17.52 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 C 0.16 3.23 2.79 -67.61 -0.19 3.05 16 29 H 0.02 0.52 7.93 -51.93 -0.41 0.11 16 30 C 0.12 2.22 5.67 -3.74 -0.02 2.20 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.42 6.83 -51.93 -0.35 0.06 16 34 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 35 H 0.07 0.86 6.42 -51.92 -0.33 0.53 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 38 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.10 0.89 7.46 -51.93 -0.39 0.51 16 41 H 0.10 0.91 5.49 -51.93 -0.29 0.62 16 42 H 0.08 0.64 5.84 -51.93 -0.30 0.33 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.86 7.98 -51.93 -0.41 0.44 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 47 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.05 1.26 7.45 -51.93 -0.39 0.87 16 49 H 0.04 1.15 7.58 -51.93 -0.39 0.75 16 50 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 51 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 52 H 0.09 2.01 6.77 -51.93 -0.35 1.66 16 LS Contribution 398.83 15.07 6.01 6.01 Total: -1.00 -33.28 398.83 -11.60 -44.87 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -8.63 Total: 0.74 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -3.55 Total: -6.98 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.48 Total: -51.70 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.28 -11.60 -44.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042112087.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.174 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds