Wall clock time and date at job start Wed Apr 1 2020 02:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47306 * 2 1 4 4 C 1.38257 * 120.00110 * 89.99792 * 3 2 1 5 5 C 1.38217 * 120.00253 * 180.02562 * 4 3 2 6 6 C 1.38261 * 119.99690 * 359.97438 * 5 4 3 7 7 C 1.38208 * 119.99873 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99888 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46869 * 90.00051 * 8 7 6 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 7 12 12 C 1.47154 * 121.21904 * 0.02562 * 11 9 8 13 13 C 1.53334 * 107.71825 * 122.67858 * 12 11 9 14 14 C 1.53090 * 110.50333 * 57.56745 * 13 12 11 15 15 H 1.09001 * 112.49712 * 70.43269 * 14 13 12 16 16 C 1.56035 * 106.38300 * 195.31046 * 14 13 12 17 17 C 1.54498 * 102.61320 * 78.36658 * 16 14 13 18 18 N 1.46663 * 107.02851 * 22.26553 * 17 16 14 19 19 C 1.36929 * 125.64218 * 182.09144 * 18 17 16 20 20 H 1.07994 * 120.00246 * 180.56085 * 19 18 17 21 21 C 1.38811 * 119.99877 * 0.56555 * 19 18 17 22 22 N 1.31617 * 120.00061 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00313 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47335 * 89.99580 * 23 21 19 25 25 H 1.48499 * 109.47533 * 209.99895 * 23 21 19 26 26 H 1.48504 * 109.47002 * 329.99825 * 23 21 19 27 27 C 1.46473 * 108.29507 * 2.57061 * 18 17 16 28 28 H 1.09007 * 108.42328 * 88.74610 * 27 18 17 29 29 C 1.46759 * 121.21919 * 180.27361 * 11 9 8 30 30 C 1.38213 * 120.00049 * 270.27857 * 3 2 1 31 31 H 1.09000 * 109.46929 * 299.99560 * 1 2 3 32 32 H 1.08996 * 109.46978 * 60.00067 * 1 2 3 33 33 H 1.08994 * 109.46860 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47265 * 240.00011 * 2 1 3 35 35 H 1.09006 * 109.47275 * 119.99507 * 2 1 3 36 36 H 1.08006 * 120.00042 * 0.02562 * 4 3 2 37 37 H 1.07994 * 120.00020 * 179.97438 * 5 4 3 38 38 H 1.07998 * 119.99704 * 179.97438 * 6 5 4 39 39 H 1.09004 * 109.47210 * 330.00344 * 8 7 6 40 40 H 1.08994 * 109.47551 * 209.99996 * 8 7 6 41 41 H 1.08994 * 109.75869 * 242.32937 * 12 11 9 42 42 H 1.09005 * 109.75978 * 3.08345 * 12 11 9 43 43 H 1.08999 * 109.39396 * 297.23817 * 13 12 11 44 44 H 1.09001 * 109.15430 * 177.74171 * 13 12 11 45 45 H 1.08997 * 110.77946 * 196.64769 * 16 14 13 46 46 H 1.09004 * 110.78130 * 319.89600 * 16 14 13 47 47 H 1.08997 * 109.90368 * 142.23325 * 17 16 14 48 48 H 1.09001 * 109.90811 * 263.29732 * 17 16 14 49 49 H 0.97006 * 120.00578 * 180.02562 * 22 21 19 50 50 H 1.09003 * 109.22953 * 352.86071 * 29 11 9 51 51 H 1.09004 * 109.22626 * 112.26292 * 29 11 9 52 52 H 1.07996 * 119.99865 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0726 1.1973 5 6 2.7230 3.3759 1.1974 6 6 2.9535 4.0276 0.0000 7 6 2.7232 3.3760 -1.1969 8 6 2.9739 4.0865 -2.5020 9 6 4.3972 3.8502 -2.9373 10 8 5.1352 3.1713 -2.2552 11 7 4.8482 4.3883 -4.0877 12 6 3.9744 5.2113 -4.9389 13 6 4.6439 6.5801 -5.1096 14 6 6.0417 6.4218 -5.7134 15 1 6.0121 6.1156 -6.7592 16 6 6.7772 7.7784 -5.4826 17 6 7.1933 7.6882 -3.9974 18 7 7.2202 6.2649 -3.6447 19 6 7.5027 5.7551 -2.4056 20 1 7.5058 4.6866 -2.2491 21 6 7.7852 6.6119 -1.3506 22 7 7.7820 7.9141 -1.5414 23 14 8.1701 5.9166 0.3399 24 1 9.6324 5.6876 0.4599 25 1 7.7326 6.8794 1.3825 26 1 7.4511 4.6300 0.5214 27 6 6.9050 5.4875 -4.8454 28 1 7.8342 5.2838 -5.3777 29 6 6.2273 4.1706 -4.5401 30 6 2.2573 2.0743 -1.1969 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8901 36 1 2.0831 1.5633 2.1327 37 1 2.9026 3.8851 2.1326 38 1 3.3128 5.0461 0.0000 39 1 2.8066 5.1558 -2.3716 40 1 2.2931 3.7023 -3.2616 41 1 3.8517 4.7342 -5.9112 42 1 3.0019 5.3315 -4.4614 43 1 4.7251 7.0670 -4.1378 44 1 4.0345 7.1964 -5.7706 45 1 7.6537 7.8575 -6.1257 46 1 6.1014 8.6177 -5.6476 47 1 8.1788 8.1332 -3.8605 48 1 6.4630 8.2057 -3.3753 49 1 7.9798 8.5129 -0.8042 50 1 6.7839 3.6532 -3.7586 51 1 6.2169 3.5560 -5.4402 52 1 2.0734 1.5666 -2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042119876.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:59 Heat of formation + Delta-G solvation = 9.783843 kcal Electronic energy + Delta-G solvation = -31371.635141 eV Core-core repulsion = 27529.094583 eV Total energy + Delta-G solvation = -3842.540558 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.10459 -39.24570 -37.88134 -34.93838 -34.38166 -32.78037 -32.34142 -31.08798 -29.59008 -29.21555 -28.35338 -27.21951 -24.58488 -23.94195 -23.73016 -22.51473 -21.91805 -20.63690 -19.94503 -19.31011 -18.14992 -16.71550 -16.54212 -16.34425 -15.68562 -15.37984 -14.99642 -14.68353 -14.64713 -14.24321 -13.91520 -13.80823 -13.63232 -13.46871 -13.12625 -13.04685 -12.83416 -12.68780 -12.56644 -12.00922 -11.98244 -11.75685 -11.69738 -11.56902 -11.32389 -11.26842 -11.19747 -10.88372 -10.78176 -10.73838 -10.67671 -10.65268 -10.05931 -9.82873 -9.79922 -9.62337 -9.47540 -9.24548 -8.58947 -8.48523 -8.39667 -8.04156 -6.73356 -5.60574 -2.92699 1.52528 1.59416 3.20459 3.48919 3.50396 3.54483 3.63729 3.98213 4.61840 4.70867 4.78188 4.95126 4.97141 5.11049 5.12890 5.20997 5.25097 5.28813 5.34388 5.40120 5.48913 5.53712 5.55928 5.59569 5.67138 5.70912 5.72401 5.75737 5.79793 5.83577 5.88226 6.00912 6.03878 6.07490 6.16961 6.23207 6.26899 6.29881 6.33041 6.47342 6.51865 6.65486 6.66398 6.72572 6.78097 6.81835 6.97758 7.14404 7.20504 7.66118 7.69339 7.95312 7.98333 8.35074 8.78811 9.34505 9.94471 10.57727 11.51027 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011660 B = 0.003995 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.883457 B = 7007.685509 C = 8626.514549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.087 4.087 4 C -0.123 4.123 5 C -0.116 4.116 6 C -0.103 4.103 7 C -0.055 4.055 8 C -0.101 4.101 9 C 0.523 3.477 10 O -0.526 6.526 11 N -0.597 5.597 12 C 0.110 3.890 13 C -0.122 4.122 14 C -0.101 4.101 15 H 0.074 0.926 16 C -0.144 4.144 17 C 0.180 3.820 18 N -0.588 5.588 19 C -0.211 4.211 20 H 0.081 0.919 21 C -0.007 4.007 22 N -0.927 5.927 23 Si 0.899 3.101 24 H -0.291 1.291 25 H -0.293 1.293 26 H -0.276 1.276 27 C 0.154 3.846 28 H 0.026 0.974 29 C 0.116 3.884 30 C -0.104 4.104 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.053 0.947 46 H 0.058 0.942 47 H 0.038 0.962 48 H 0.046 0.954 49 H 0.248 0.752 50 H 0.094 0.906 51 H 0.052 0.948 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.261 -8.436 -5.057 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C -0.087 4.087 4 C -0.141 4.141 5 C -0.134 4.134 6 C -0.121 4.121 7 C -0.055 4.055 8 C -0.140 4.140 9 C 0.311 3.689 10 O -0.402 6.402 11 N -0.330 5.330 12 C -0.013 4.013 13 C -0.161 4.161 14 C -0.121 4.121 15 H 0.092 0.908 16 C -0.182 4.182 17 C 0.055 3.945 18 N -0.313 5.313 19 C -0.339 4.339 20 H 0.099 0.901 21 C -0.202 4.202 22 N -0.575 5.575 23 Si 0.730 3.270 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.201 1.201 27 C 0.045 3.955 28 H 0.043 0.957 29 C -0.008 4.008 30 C -0.122 4.122 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.056 0.944 48 H 0.064 0.936 49 H 0.059 0.941 50 H 0.112 0.888 51 H 0.070 0.930 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.807 -8.732 -4.439 17.754 hybrid contribution 0.423 0.031 0.886 0.983 sum -14.384 -8.701 -3.553 17.183 Atomic orbital electron populations 1.21741 0.94967 1.01375 1.02140 1.20508 0.95896 0.92956 1.02688 1.19752 0.99892 0.95905 0.93151 1.20931 1.00913 0.94996 0.97218 1.21072 0.99422 0.94965 0.97932 1.21058 0.98618 1.00462 0.91985 1.19280 0.98184 0.94249 0.93806 1.20688 0.95356 1.02344 0.95662 1.20156 0.88913 0.79704 0.80176 1.90711 1.57855 1.39064 1.52549 1.47795 1.12339 1.50897 1.21991 1.21753 0.93355 0.91807 0.94384 1.21919 0.95600 0.95993 1.02546 1.22364 0.94879 0.97235 0.97631 0.90769 1.23172 0.98798 0.95821 1.00441 1.21071 0.99796 0.85658 0.87959 1.44107 1.81202 1.01051 1.04946 1.19056 1.38763 0.91944 0.84184 0.90110 1.24667 1.02447 0.95363 0.97762 1.69968 1.56308 1.00881 1.30386 0.86261 0.78050 0.78225 0.84458 1.21847 1.21936 1.20150 1.20708 0.94516 0.90812 0.89448 0.95706 1.21325 0.82160 0.97876 0.99414 1.20754 1.00221 0.93927 0.97327 0.92653 0.92595 0.92661 0.91190 0.91247 0.86593 0.86249 0.86027 0.88154 0.88722 0.91890 0.90523 0.90054 0.92191 0.92869 0.92369 0.94399 0.93588 0.94129 0.88794 0.92974 0.86651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.89 37.16 0.37 -0.86 16 2 C -0.08 -0.84 6.06 -27.88 -0.17 -1.01 16 3 C -0.09 -1.14 5.13 -104.62 -0.54 -1.68 16 4 C -0.12 -1.64 9.70 -39.58 -0.38 -2.02 16 5 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 6 C -0.10 -1.68 9.70 -39.58 -0.38 -2.07 16 7 C -0.05 -0.85 4.37 -104.63 -0.46 -1.31 16 8 C -0.10 -1.45 4.20 -29.03 -0.12 -1.57 16 9 C 0.52 9.77 7.71 -10.98 -0.08 9.69 16 10 O -0.53 -12.21 15.49 5.55 0.09 -12.12 16 11 N -0.60 -10.25 2.96 -173.81 -0.51 -10.76 16 12 C 0.11 1.45 6.39 -3.51 -0.02 1.43 16 13 C -0.12 -1.82 5.05 -26.51 -0.13 -1.96 16 14 C -0.10 -1.64 3.68 -88.43 -0.33 -1.97 16 15 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 16 C -0.14 -2.58 6.32 -24.32 -0.15 -2.74 16 17 C 0.18 4.27 4.59 -3.17 -0.01 4.26 16 18 N -0.59 -14.50 3.13 -165.06 -0.52 -15.02 16 19 C -0.21 -5.93 9.69 -15.06 -0.15 -6.08 16 20 H 0.08 2.36 6.52 -52.49 -0.34 2.01 16 21 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 22 N -0.93 -27.55 10.31 55.49 0.57 -26.97 16 23 Si 0.90 23.61 29.55 -169.99 -5.02 18.59 16 24 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 25 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 26 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 27 C 0.15 3.05 3.00 -68.32 -0.21 2.84 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 C 0.12 2.16 5.66 -4.80 -0.03 2.13 16 30 C -0.10 -1.47 9.36 -39.58 -0.37 -1.84 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 36 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 37 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 39 H 0.10 1.36 7.74 -51.93 -0.40 0.96 16 40 H 0.09 1.05 7.84 -51.93 -0.41 0.64 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.84 6.02 -51.93 -0.31 0.53 16 43 H 0.08 1.53 6.84 -51.93 -0.36 1.18 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.06 0.94 7.98 -51.93 -0.41 0.53 16 47 H 0.04 1.02 7.59 -51.93 -0.39 0.62 16 48 H 0.05 1.22 6.96 -51.93 -0.36 0.86 16 49 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 50 H 0.09 2.09 5.56 -51.93 -0.29 1.80 16 51 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 52 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 401.87 15.07 6.06 6.06 Total: -1.00 -33.79 401.87 -11.75 -45.54 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -8.75 Total: 1.85 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -3.66 Total: -7.17 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.46 Total: -52.75 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -5.02 Total: 18.59 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.79 -11.75 -45.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042119876.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.328 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds