Wall clock time and date at job start Wed Apr 1 2020 02:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.46815 * 2 1 4 4 C 1.38261 * 120.00550 * 270.02034 * 3 2 1 5 5 C 1.38208 * 120.00590 * 180.02562 * 4 3 2 6 6 C 1.38263 * 119.99469 * 359.70584 * 5 4 3 7 7 C 1.38210 * 120.00075 * 0.55350 * 6 5 4 8 8 C 1.50695 * 119.99888 * 179.74638 * 7 6 5 9 9 C 1.50703 * 109.46813 * 269.72174 * 8 7 6 10 10 O 1.21281 * 120.00144 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99763 * 179.97438 * 9 8 7 12 12 C 1.46596 * 119.75353 * 0.02562 * 11 9 8 13 13 C 1.53888 * 110.71364 * 131.98295 * 12 11 9 14 14 C 1.51975 * 107.28573 * 51.80410 * 13 12 11 15 15 H 1.09002 * 111.01604 * 57.33676 * 14 13 12 16 16 C 1.53707 * 115.00060 * 184.55399 * 14 13 12 17 17 C 1.55298 * 101.81547 * 153.46556 * 16 14 13 18 18 N 1.48164 * 107.04096 * 337.55228 * 17 16 14 19 19 C 1.36938 * 126.39678 * 174.99914 * 18 17 16 20 20 H 1.08002 * 119.99769 * 179.97438 * 19 18 17 21 21 C 1.38807 * 120.00108 * 359.97438 * 19 18 17 22 22 N 1.31627 * 119.99962 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00052 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47060 * 90.00160 * 23 21 19 25 25 H 1.48503 * 109.47105 * 209.99924 * 23 21 19 26 26 H 1.48490 * 109.47027 * 329.99918 * 23 21 19 27 27 C 1.45511 * 107.20482 * 355.00434 * 18 17 16 28 28 H 1.08998 * 109.56406 * 273.36694 * 27 18 17 29 29 C 1.47792 * 119.74910 * 179.72395 * 11 9 8 30 30 C 1.38211 * 119.99914 * 90.00512 * 3 2 1 31 31 H 1.09001 * 109.47410 * 59.99867 * 1 2 3 32 32 H 1.09005 * 109.47394 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47448 * 299.99809 * 1 2 3 34 34 H 1.09003 * 109.46972 * 240.00301 * 2 1 3 35 35 H 1.08994 * 109.47136 * 120.00394 * 2 1 3 36 36 H 1.08005 * 119.99758 * 359.97438 * 4 3 2 37 37 H 1.07997 * 120.00286 * 179.97438 * 5 4 3 38 38 H 1.08004 * 119.99428 * 180.29524 * 6 5 4 39 39 H 1.09007 * 109.47355 * 149.72319 * 8 7 6 40 40 H 1.09001 * 109.47176 * 29.72009 * 8 7 6 41 41 H 1.08996 * 109.22715 * 252.30234 * 12 11 9 42 42 H 1.09000 * 109.22824 * 11.70390 * 12 11 9 43 43 H 1.08994 * 109.89160 * 171.25145 * 13 12 11 44 44 H 1.09006 * 109.88872 * 292.35892 * 13 12 11 45 45 H 1.08999 * 110.95891 * 271.59122 * 16 14 13 46 46 H 1.08998 * 110.96040 * 35.33238 * 16 14 13 47 47 H 1.08995 * 109.92568 * 96.90091 * 17 16 14 48 48 H 1.08993 * 109.92026 * 218.01091 * 17 16 14 49 49 H 0.97000 * 119.99617 * 179.97438 * 22 21 19 50 50 H 1.09006 * 110.07000 * 350.75381 * 29 11 9 51 51 H 1.09008 * 110.06354 * 112.31115 * 29 11 9 52 52 H 1.07997 * 119.99840 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2622 2.0728 -1.1973 5 6 2.7234 3.3757 -1.1973 6 6 2.9488 4.0291 0.0001 7 6 2.7240 3.3756 1.1970 8 6 2.9753 4.0859 2.5021 9 6 4.3986 3.8491 2.9370 10 8 5.1364 3.1707 2.2541 11 7 4.8519 4.3920 4.0843 12 6 3.9555 5.2116 4.9053 13 6 4.0237 4.7813 6.3812 14 6 5.4900 4.7692 6.7807 15 1 5.9474 5.7451 6.6185 16 6 5.7719 4.2550 8.2016 17 6 7.2219 3.7167 8.0631 18 7 7.4443 3.4326 6.6260 19 6 8.6201 3.0329 6.0491 20 1 8.6660 2.8534 4.9851 21 6 9.7531 2.8585 6.8319 22 7 9.6973 3.0778 8.1286 23 14 11.3570 2.3126 6.0451 24 1 12.1340 3.5065 5.6254 25 1 12.1477 1.5273 7.0266 26 1 11.0643 1.4700 4.8579 27 6 6.1798 3.6578 5.9421 28 1 5.5791 2.7490 5.9769 29 6 6.2469 4.1511 4.5087 30 6 2.2626 2.0723 1.1970 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 2.0824 1.5637 -2.1327 37 1 2.9034 3.8848 -2.1326 38 1 3.3047 5.0489 0.0001 39 1 2.2945 3.7018 3.2618 40 1 2.8083 5.1552 2.3718 41 1 4.2493 6.2579 4.8224 42 1 2.9332 5.0962 4.5452 43 1 3.4765 5.4921 7.0003 44 1 3.5995 3.7839 6.4967 45 1 5.7253 5.0675 8.9266 46 1 5.0827 3.4544 8.4704 47 1 7.9318 4.4688 8.4071 48 1 7.3365 2.8036 8.6471 49 1 10.4890 2.9555 8.6756 50 1 6.7055 3.3931 3.8735 51 1 6.8184 5.0780 4.4587 52 1 2.0823 1.5633 2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042119877.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:03 Heat of formation + Delta-G solvation = 8.104584 kcal Electronic energy + Delta-G solvation = -30165.571362 eV Core-core repulsion = 26322.957986 eV Total energy + Delta-G solvation = -3842.613376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.38250 -39.42116 -38.09513 -35.35415 -34.58018 -32.89030 -32.57172 -31.22748 -29.87244 -29.45707 -28.56419 -27.31315 -24.68324 -24.10260 -23.69997 -22.26019 -22.10814 -20.76285 -20.06375 -19.63744 -18.72680 -17.06148 -16.66959 -16.44365 -15.93196 -15.61907 -15.10829 -14.97504 -14.71584 -14.34838 -14.07638 -13.94241 -13.82675 -13.61169 -13.33257 -13.20496 -13.07614 -12.86013 -12.69996 -12.24081 -12.21448 -12.06466 -11.91063 -11.81361 -11.51207 -11.39168 -11.29939 -10.98672 -10.91987 -10.88987 -10.78606 -10.73419 -10.13891 -9.95536 -9.86332 -9.69019 -9.60837 -9.46240 -8.82714 -8.65451 -8.61589 -8.38209 -6.84333 -5.70684 -3.04323 1.27342 1.35327 2.81607 3.15425 3.42734 3.48393 3.50873 3.72306 4.49994 4.52748 4.57112 4.71152 4.72738 4.88946 4.94925 4.99896 5.02393 5.11378 5.15768 5.17582 5.29563 5.31859 5.40148 5.43904 5.49578 5.51201 5.63097 5.67545 5.69485 5.71006 5.77104 5.90821 5.93425 5.99831 6.03377 6.04624 6.07967 6.14014 6.17491 6.39312 6.40360 6.49488 6.50146 6.55629 6.57094 6.73173 6.76940 6.95283 7.06794 7.56035 7.59366 7.64130 7.82474 8.24315 8.39366 9.20562 9.83436 10.49983 11.41698 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012829 B = 0.002676 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.078831 B =10458.962836 C =11431.360295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.058 4.058 8 C -0.102 4.102 9 C 0.511 3.489 10 O -0.532 6.532 11 N -0.608 5.608 12 C 0.108 3.892 13 C -0.120 4.120 14 C -0.112 4.112 15 H 0.077 0.923 16 C -0.138 4.138 17 C 0.177 3.823 18 N -0.592 5.592 19 C -0.227 4.227 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.922 5.922 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.157 3.843 28 H 0.023 0.977 29 C 0.116 3.884 30 C -0.102 4.102 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.037 0.963 49 H 0.252 0.748 50 H 0.091 0.909 51 H 0.069 0.931 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.236 3.147 -11.769 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.059 4.059 8 C -0.142 4.142 9 C 0.298 3.702 10 O -0.408 6.408 11 N -0.342 5.342 12 C -0.016 4.016 13 C -0.159 4.159 14 C -0.132 4.132 15 H 0.095 0.905 16 C -0.176 4.176 17 C 0.053 3.947 18 N -0.317 5.317 19 C -0.355 4.355 20 H 0.097 0.903 21 C -0.203 4.203 22 N -0.570 5.570 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.048 3.952 28 H 0.040 0.960 29 C -0.006 4.006 30 C -0.120 4.120 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.055 0.945 49 H 0.062 0.938 50 H 0.109 0.891 51 H 0.087 0.913 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.580 2.717 -12.052 24.004 hybrid contribution 0.989 -0.177 -0.192 1.023 sum -19.591 2.540 -12.244 23.242 Atomic orbital electron populations 1.21741 0.94804 1.01599 1.02105 1.20543 0.96038 0.92779 1.02980 1.19820 0.99209 0.96061 0.93091 1.20967 1.00589 0.95016 0.97335 1.21047 0.99673 0.94991 0.97790 1.20944 0.99881 1.00002 0.92010 1.19282 0.98550 0.94367 0.93686 1.20739 0.95248 1.02190 0.96021 1.20463 0.89207 0.79590 0.80939 1.90729 1.58133 1.38472 1.53478 1.48309 1.13182 1.50897 1.21855 1.21736 0.93418 0.94659 0.91738 1.21816 0.97667 1.01930 0.94490 1.22254 0.94103 0.99704 0.97135 0.90488 1.22731 1.00120 0.99534 0.95256 1.21537 0.89606 0.98880 0.84703 1.44173 1.05265 1.79159 1.03114 1.19048 0.85717 1.38276 0.92484 0.90294 1.24779 0.98012 1.01821 0.95670 1.69947 1.28285 1.55070 1.03670 0.86146 0.83548 0.78209 0.78105 1.21582 1.21686 1.20569 1.20963 0.89277 0.94360 0.90564 0.95977 1.21710 0.79906 1.01712 0.97251 1.20839 0.99609 0.93924 0.97628 0.92672 0.92481 0.92550 0.91094 0.90939 0.86422 0.86211 0.86379 0.88094 0.88158 0.91675 0.90351 0.90865 0.91438 0.92245 0.92592 0.92643 0.94457 0.93779 0.89074 0.91315 0.86361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.16 0.37 -0.69 16 2 C -0.09 -0.76 6.06 -27.89 -0.17 -0.93 16 3 C -0.08 -0.90 5.13 -104.63 -0.54 -1.44 16 4 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 5 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 6 C -0.11 -1.28 9.70 -39.58 -0.38 -1.66 16 7 C -0.06 -0.71 4.37 -104.63 -0.46 -1.17 16 8 C -0.10 -1.10 4.16 -29.04 -0.12 -1.23 16 9 C 0.51 7.92 7.67 -10.98 -0.08 7.84 16 10 O -0.53 -10.67 15.40 5.56 0.09 -10.59 16 11 N -0.61 -9.23 3.01 -172.76 -0.52 -9.75 16 12 C 0.11 1.20 6.22 -3.53 -0.02 1.18 16 13 C -0.12 -1.47 5.72 -26.79 -0.15 -1.63 16 14 C -0.11 -1.87 2.61 -89.51 -0.23 -2.10 16 15 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 16 C -0.14 -2.49 6.54 -25.15 -0.16 -2.65 16 17 C 0.18 4.24 5.45 -1.91 -0.01 4.23 16 18 N -0.59 -15.01 3.35 -162.93 -0.55 -15.55 16 19 C -0.23 -6.36 9.88 -15.06 -0.15 -6.51 16 20 H 0.08 2.18 7.41 -52.49 -0.39 1.79 16 21 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 22 N -0.92 -27.16 10.44 55.49 0.58 -26.58 16 23 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.16 3.24 2.75 -67.84 -0.19 3.05 16 28 H 0.02 0.50 7.93 -51.93 -0.41 0.09 16 29 C 0.12 2.24 5.69 -3.97 -0.02 2.21 16 30 C -0.10 -1.23 9.36 -39.58 -0.37 -1.60 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 35 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 36 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 37 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 38 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 39 H 0.10 0.88 7.50 -51.92 -0.39 0.49 16 40 H 0.10 0.83 7.93 -51.93 -0.41 0.42 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.63 5.84 -51.93 -0.30 0.33 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.85 7.98 -51.93 -0.41 0.44 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 47 H 0.06 1.47 7.20 -51.93 -0.37 1.09 16 48 H 0.04 0.99 7.77 -51.93 -0.40 0.58 16 49 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 50 H 0.09 2.01 6.76 -51.93 -0.35 1.66 16 51 H 0.07 1.34 8.14 -51.92 -0.42 0.91 16 52 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 405.82 15.07 6.12 6.12 Total: -1.00 -33.43 405.82 -11.80 -45.23 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -8.92 Total: 0.27 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -3.57 Total: -6.68 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.49 Total: -51.88 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.43 -11.80 -45.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042119877.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.336 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds