Wall clock time and date at job start Wed Apr 1 2020 02:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47345 * 2 1 4 4 C 1.38256 * 120.00055 * 89.99566 * 3 2 1 5 5 C 1.38218 * 119.99786 * 180.02562 * 4 3 2 6 6 C 1.38251 * 119.99847 * 0.02562 * 5 4 3 7 7 C 1.38206 * 120.00439 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00076 * 179.97438 * 7 6 5 9 9 C 1.50705 * 109.47263 * 90.00572 * 8 7 6 10 10 O 1.21285 * 119.99374 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00621 * 180.02562 * 9 8 7 12 12 C 1.46606 * 119.74846 * 359.97438 * 11 9 8 13 13 C 1.53883 * 110.67321 * 227.76625 * 12 11 9 14 14 C 1.51984 * 107.29788 * 308.13669 * 13 12 11 15 15 H 1.08998 * 111.57706 * 303.19855 * 14 13 12 16 16 C 1.53709 * 115.01592 * 175.47334 * 14 13 12 17 17 C 1.55300 * 101.81105 * 206.55774 * 16 14 13 18 18 N 1.47259 * 106.87916 * 21.83619 * 17 16 14 19 19 C 1.36941 * 125.91973 * 185.55196 * 18 17 16 20 20 H 1.07994 * 120.00235 * 173.43790 * 19 18 17 21 21 C 1.38816 * 119.99767 * 353.43487 * 19 18 17 22 22 N 1.31610 * 120.00212 * 5.67661 * 21 19 18 23 23 Si 1.86805 * 119.99787 * 185.68240 * 21 19 18 24 24 H 1.48494 * 109.47412 * 94.98649 * 23 21 19 25 25 H 1.48500 * 109.46830 * 214.98990 * 23 21 19 26 26 H 1.48503 * 109.47190 * 334.98554 * 23 21 19 27 27 C 1.45502 * 107.68326 * 6.00223 * 18 17 16 28 28 H 1.09002 * 109.56848 * 85.40091 * 27 18 17 29 29 C 1.47794 * 119.75815 * 179.97438 * 11 9 8 30 30 C 1.38210 * 119.99638 * 270.27450 * 3 2 1 31 31 H 1.09003 * 109.46667 * 60.00194 * 1 2 3 32 32 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47378 * 300.00221 * 1 2 3 34 34 H 1.09002 * 109.47284 * 239.99352 * 2 1 3 35 35 H 1.09003 * 109.46667 * 119.99806 * 2 1 3 36 36 H 1.07999 * 119.99974 * 359.97438 * 4 3 2 37 37 H 1.07999 * 119.99458 * 179.97438 * 5 4 3 38 38 H 1.08001 * 119.99737 * 179.97438 * 6 5 4 39 39 H 1.08999 * 109.47598 * 330.00282 * 8 7 6 40 40 H 1.08997 * 109.47497 * 210.00184 * 8 7 6 41 41 H 1.08994 * 109.22763 * 348.06666 * 12 11 9 42 42 H 1.08996 * 109.22427 * 107.47322 * 12 11 9 43 43 H 1.09007 * 109.89518 * 67.61653 * 13 12 11 44 44 H 1.09005 * 109.88844 * 188.71882 * 13 12 11 45 45 H 1.08990 * 110.95856 * 324.68924 * 16 14 13 46 46 H 1.08994 * 110.95689 * 88.38916 * 16 14 13 47 47 H 1.09002 * 109.91732 * 141.79506 * 17 16 14 48 48 H 1.09003 * 109.91925 * 262.89057 * 17 16 14 49 49 H 0.96998 * 120.00342 * 179.97438 * 22 21 19 50 50 H 1.08994 * 110.06281 * 247.96133 * 29 11 9 51 51 H 1.09003 * 110.06044 * 9.41513 * 29 11 9 52 52 H 1.07990 * 120.00658 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.1973 5 6 2.7231 3.3758 1.1973 6 6 2.9526 4.0278 -0.0001 7 6 2.7223 3.3763 -1.1970 8 6 2.9719 4.0872 -2.5020 9 6 4.3952 3.8519 -2.9380 10 8 5.1342 3.1741 -2.2558 11 7 4.8472 4.3956 -4.0854 12 6 3.9494 5.2144 -4.9056 13 6 4.0224 4.7880 -6.3824 14 6 5.4895 4.7835 -6.7794 15 1 5.9539 5.7547 -6.6089 16 6 5.7765 4.2746 -8.2011 17 6 7.2285 3.7419 -8.0610 18 7 7.4486 3.4717 -6.6302 19 6 8.6326 3.0904 -6.0575 20 1 8.7146 3.0196 -4.9830 21 6 9.7275 2.7949 -6.8581 22 7 9.6631 2.9879 -8.1584 23 14 11.2921 2.1231 -6.0899 24 1 11.2837 0.6402 -6.1659 25 1 12.4700 2.6499 -6.8250 26 1 11.3664 2.5455 -4.6682 27 6 6.1821 3.6725 -5.9426 28 1 5.5914 2.7577 -5.9911 29 6 6.2442 4.1618 -4.5075 30 6 2.2574 2.0741 -1.1970 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.0823 1.5636 2.1326 37 1 2.9026 3.8851 2.1326 38 1 3.3118 5.0463 -0.0001 39 1 2.8039 5.1562 -2.3715 40 1 2.2911 3.7025 -3.2614 41 1 2.9269 5.0948 -4.5475 42 1 4.2397 6.2615 -4.8195 43 1 3.6025 3.7892 -6.5013 44 1 3.4734 5.4981 -7.0010 45 1 5.0913 3.4720 -8.4737 46 1 5.7273 5.0889 -8.9240 47 1 7.3471 2.8290 -8.6447 48 1 7.9358 4.4967 -8.4048 49 1 10.4282 2.7818 -8.7178 50 1 6.8115 5.0909 -4.4535 51 1 6.7050 3.4052 -3.8724 52 1 2.0735 1.5664 -2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042119878.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:07 Heat of formation + Delta-G solvation = 8.099457 kcal Electronic energy + Delta-G solvation = -30165.756183 eV Core-core repulsion = 26323.142584 eV Total energy + Delta-G solvation = -3842.613599 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.38725 -39.42934 -38.12147 -35.38811 -34.58082 -32.89506 -32.57220 -31.23221 -29.87814 -29.46023 -28.56464 -27.32250 -24.67878 -24.10434 -23.70625 -22.27144 -22.10998 -20.76573 -20.05465 -19.64313 -18.73039 -17.06512 -16.67322 -16.44592 -15.93223 -15.61860 -15.11434 -14.98110 -14.72575 -14.34960 -14.07642 -13.94208 -13.82558 -13.61156 -13.33825 -13.20640 -13.07691 -12.85742 -12.69512 -12.25247 -12.21761 -12.06497 -11.91452 -11.81620 -11.52272 -11.40415 -11.30107 -10.99085 -10.92064 -10.89002 -10.79302 -10.73734 -10.12233 -9.96103 -9.85692 -9.70524 -9.62550 -9.44640 -8.82832 -8.65552 -8.59326 -8.38486 -6.83409 -5.71953 -3.05284 1.27269 1.35224 2.81417 3.14937 3.42846 3.48866 3.50491 3.72178 4.49951 4.52676 4.57018 4.70955 4.72676 4.89103 4.94926 5.00176 5.02375 5.11257 5.15681 5.17333 5.29603 5.31823 5.41487 5.43845 5.48761 5.51082 5.60910 5.68274 5.69452 5.71467 5.78835 5.90579 5.92824 5.99891 6.03461 6.04571 6.08101 6.13927 6.17920 6.39233 6.40318 6.49707 6.50199 6.55539 6.57357 6.73391 6.77182 6.95205 7.07045 7.57310 7.60945 7.63924 7.83347 8.25698 8.39086 9.21593 9.83782 10.49758 11.40379 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012735 B = 0.002682 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.210723 B =10436.559771 C =11430.767691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.058 4.058 8 C -0.102 4.102 9 C 0.511 3.489 10 O -0.532 6.532 11 N -0.608 5.608 12 C 0.108 3.892 13 C -0.120 4.120 14 C -0.113 4.113 15 H 0.077 0.923 16 C -0.139 4.139 17 C 0.179 3.821 18 N -0.592 5.592 19 C -0.230 4.230 20 H 0.079 0.921 21 C -0.005 4.005 22 N -0.920 5.920 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.157 3.843 28 H 0.024 0.976 29 C 0.118 3.882 30 C -0.102 4.102 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.040 0.960 48 H 0.050 0.950 49 H 0.252 0.748 50 H 0.068 0.932 51 H 0.091 0.909 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.187 3.291 11.881 24.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.059 4.059 8 C -0.142 4.142 9 C 0.298 3.702 10 O -0.408 6.408 11 N -0.342 5.342 12 C -0.015 4.015 13 C -0.158 4.158 14 C -0.133 4.133 15 H 0.095 0.905 16 C -0.177 4.177 17 C 0.054 3.946 18 N -0.317 5.317 19 C -0.358 4.358 20 H 0.097 0.903 21 C -0.201 4.201 22 N -0.567 5.567 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.048 3.952 28 H 0.041 0.959 29 C -0.005 4.005 30 C -0.120 4.120 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.058 0.942 48 H 0.068 0.932 49 H 0.062 0.938 50 H 0.087 0.913 51 H 0.110 0.890 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.534 2.872 12.164 24.039 hybrid contribution 0.970 -0.279 0.170 1.023 sum -19.565 2.593 12.334 23.273 Atomic orbital electron populations 1.21742 0.94802 1.01601 1.02104 1.20545 0.96035 0.92784 1.02981 1.19818 0.99214 0.96052 0.93092 1.20969 1.00603 0.94998 0.97335 1.21047 0.99677 0.94995 0.97790 1.20937 0.99847 1.00023 0.92009 1.19283 0.98533 0.94393 0.93683 1.20737 0.95246 1.02191 0.96017 1.20462 0.89227 0.79590 0.80914 1.90731 1.58074 1.38495 1.53511 1.48302 1.13048 1.50974 1.21916 1.21739 0.93386 0.94669 0.91751 1.21803 0.97635 1.01940 0.94456 1.22276 0.94045 0.99803 0.97173 0.90466 1.22743 1.00214 0.99529 0.95214 1.21374 0.89452 0.98875 0.84855 1.43973 1.04412 1.80061 1.03230 1.19059 0.87063 1.38292 0.91401 0.90321 1.24805 0.98392 1.01389 0.95550 1.69960 1.30260 1.53381 1.03130 0.86146 0.82787 0.78935 0.78257 1.21583 1.21779 1.20495 1.20972 0.89132 0.94518 0.90581 0.95857 1.21673 0.79875 1.01738 0.97174 1.20840 0.99629 0.93913 0.97627 0.92549 0.92479 0.92672 0.90937 0.91095 0.86420 0.86212 0.86382 0.88156 0.88092 0.90341 0.91685 0.91417 0.90883 0.92611 0.92298 0.94201 0.93152 0.93763 0.91331 0.89049 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.90 37.16 0.37 -0.69 16 2 C -0.09 -0.76 6.06 -27.88 -0.17 -0.93 16 3 C -0.08 -0.90 5.13 -104.63 -0.54 -1.44 16 4 C -0.12 -1.27 9.70 -39.58 -0.38 -1.66 16 5 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 6 C -0.11 -1.28 9.70 -39.59 -0.38 -1.66 16 7 C -0.06 -0.71 4.37 -104.63 -0.46 -1.17 16 8 C -0.10 -1.10 4.16 -29.04 -0.12 -1.22 16 9 C 0.51 7.90 7.67 -10.99 -0.08 7.82 16 10 O -0.53 -10.65 15.40 5.55 0.09 -10.57 16 11 N -0.61 -9.20 3.01 -172.76 -0.52 -9.72 16 12 C 0.11 1.20 6.22 -3.52 -0.02 1.18 16 13 C -0.12 -1.47 5.72 -26.79 -0.15 -1.62 16 14 C -0.11 -1.89 2.61 -89.50 -0.23 -2.12 16 15 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 16 C -0.14 -2.50 6.54 -25.14 -0.16 -2.67 16 17 C 0.18 4.30 5.40 -2.41 -0.01 4.29 16 18 N -0.59 -14.99 3.31 -163.64 -0.54 -15.53 16 19 C -0.23 -6.43 9.89 -15.06 -0.15 -6.58 16 20 H 0.08 2.17 7.39 -52.49 -0.39 1.78 16 21 C 0.00 -0.14 5.49 -17.43 -0.10 -0.24 16 22 N -0.92 -27.10 10.41 55.49 0.58 -26.52 16 23 Si 0.91 22.56 29.56 -169.99 -5.02 17.54 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 C 0.16 3.23 2.78 -67.84 -0.19 3.04 16 28 H 0.02 0.53 7.94 -51.93 -0.41 0.12 16 29 C 0.12 2.25 5.64 -3.97 -0.02 2.23 16 30 C -0.10 -1.22 9.36 -39.58 -0.37 -1.59 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 35 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.10 0.83 7.94 -51.93 -0.41 0.42 16 40 H 0.10 0.88 7.49 -51.93 -0.39 0.49 16 41 H 0.08 0.63 5.84 -51.93 -0.30 0.33 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.86 7.99 -51.93 -0.41 0.44 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.04 1.06 7.60 -51.93 -0.39 0.67 16 48 H 0.05 1.33 7.37 -51.93 -0.38 0.95 16 49 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 50 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 51 H 0.09 2.01 6.81 -51.93 -0.35 1.65 16 52 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 405.73 15.07 6.11 6.11 Total: -1.00 -33.40 405.73 -11.81 -45.21 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -8.92 Total: 0.17 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -3.58 Total: -6.69 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.48 Total: -51.78 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.40 -11.81 -45.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042119878.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.307 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds