Wall clock time and date at job start Wed Apr 1 2020 01:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38256 * 119.99995 * 2 1 4 4 C 1.38222 * 120.00078 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99655 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99906 * 179.97438 * 5 4 3 7 7 C 1.38212 * 120.00553 * 359.97438 * 5 4 3 8 8 C 1.50702 * 120.00361 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.46728 * 85.00105 * 8 7 5 10 10 O 1.21280 * 120.00155 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99870 * 180.02562 * 9 8 7 12 12 C 1.46770 * 119.71348 * 0.02562 * 11 9 8 13 13 C 1.53887 * 110.61675 * 132.27798 * 12 11 9 14 14 C 1.51981 * 107.35245 * 51.78064 * 13 12 11 15 15 H 1.08999 * 111.01337 * 56.47627 * 14 13 12 16 16 C 1.53692 * 115.00476 * 183.69524 * 14 13 12 17 17 C 1.55307 * 101.81406 * 153.46120 * 16 14 13 18 18 N 1.48156 * 107.04124 * 337.55805 * 17 16 14 19 19 C 1.36940 * 126.39569 * 175.00006 * 18 17 16 20 20 H 1.07995 * 119.99582 * 179.97438 * 19 18 17 21 21 C 1.38808 * 119.99997 * 359.97438 * 19 18 17 22 22 N 1.31620 * 120.00077 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99933 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47124 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46692 * 119.99962 * 23 21 19 26 26 H 1.48495 * 109.47031 * 239.99812 * 23 21 19 27 27 C 1.46082 * 107.65348 * 355.69309 * 18 17 16 28 28 H 1.08996 * 109.03034 * 272.58007 * 27 18 17 29 29 C 1.47795 * 119.75243 * 180.02562 * 11 9 8 30 30 C 1.38220 * 120.00194 * 180.27553 * 2 1 3 31 31 H 1.08998 * 109.46947 * 89.99725 * 1 2 3 32 32 H 1.08999 * 109.46774 * 209.99988 * 1 2 3 33 33 H 1.08999 * 109.47030 * 329.99932 * 1 2 3 34 34 H 1.07998 * 120.00071 * 359.97438 * 3 2 1 35 35 H 1.07994 * 120.00232 * 179.97438 * 4 3 2 36 36 H 1.08991 * 109.47328 * 270.02511 * 6 5 4 37 37 H 1.09007 * 109.46606 * 30.02343 * 6 5 4 38 38 H 1.09002 * 109.46940 * 150.01826 * 6 5 4 39 39 H 1.08996 * 109.47075 * 325.00164 * 8 7 5 40 40 H 1.08995 * 109.47019 * 205.00044 * 8 7 5 41 41 H 1.09001 * 109.32866 * 11.95937 * 12 11 9 42 42 H 1.08992 * 109.22002 * 252.53795 * 12 11 9 43 43 H 1.09002 * 109.89563 * 292.29614 * 13 12 11 44 44 H 1.09003 * 109.89273 * 171.26246 * 13 12 11 45 45 H 1.08996 * 110.96275 * 271.58847 * 16 14 13 46 46 H 1.09006 * 110.95898 * 35.29655 * 16 14 13 47 47 H 1.08997 * 109.92071 * 96.90666 * 17 16 14 48 48 H 1.09000 * 109.91897 * 218.00872 * 17 16 14 49 49 H 0.96998 * 120.00344 * 180.02562 * 22 21 19 50 50 H 1.08995 * 110.06888 * 112.06015 * 29 11 9 51 51 H 1.09001 * 110.06634 * 350.48824 * 29 11 9 52 52 H 1.07999 * 119.99570 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7788 0.0000 0.0005 7 6 3.5807 -1.1970 0.0005 8 6 4.3342 -2.5021 0.0000 9 6 4.6931 -2.8755 1.4152 10 8 4.3694 -2.1527 2.3337 11 7 5.3748 -4.0121 1.6600 12 6 5.7649 -4.8813 0.5435 13 6 7.2453 -5.2842 0.6622 14 6 7.4532 -5.8395 2.0616 15 1 6.7751 -6.6701 2.2572 16 6 8.9036 -6.2172 2.4018 17 6 8.9193 -6.0592 3.9467 18 7 7.8116 -5.1411 4.3005 19 6 7.4079 -4.8043 5.5650 20 1 6.5835 -4.1207 5.7044 21 6 8.0582 -5.3415 6.6674 22 7 9.0625 -6.1750 6.4974 23 14 7.5078 -4.8815 8.3922 24 1 6.3661 -3.9354 8.3117 25 1 7.0856 -6.1053 9.1199 26 1 8.6339 -4.2388 9.1161 27 6 7.2124 -4.6690 3.0547 28 1 7.7512 -3.7850 2.7138 29 6 5.7234 -4.3733 3.0501 30 6 2.1982 -1.1970 -0.0058 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6583 2.1326 -0.0004 35 1 4.1205 2.1326 0.0001 36 1 6.1421 0.0004 -1.0270 37 1 6.1421 0.8898 0.5148 38 1 6.1421 -0.8902 0.5141 39 1 5.2447 -2.3957 -0.5898 40 1 3.7091 -3.2823 -0.4343 41 1 5.6113 -4.3517 -0.3967 42 1 5.1465 -5.7787 0.5545 43 1 7.8806 -4.4114 0.5114 44 1 7.4824 -6.0477 -0.0788 45 1 9.1166 -7.2464 2.1130 46 1 9.6062 -5.5290 1.9318 47 1 8.7641 -7.0284 4.4207 48 1 9.8719 -5.6375 4.2672 49 1 9.5167 -6.5507 7.2677 50 1 5.1654 -5.2575 3.3579 51 1 5.5055 -3.5405 3.7187 52 1 1.6581 -2.1322 -0.0107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042212562.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:53 Heat of formation + Delta-G solvation = 8.685679 kcal Electronic energy + Delta-G solvation = -30605.304744 eV Core-core repulsion = 26762.716566 eV Total energy + Delta-G solvation = -3842.588178 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -40.48624 -39.46113 -38.04762 -35.33019 -34.30134 -32.88048 -32.49557 -31.21644 -29.74621 -29.38254 -28.59044 -27.49769 -24.89815 -24.66597 -23.70630 -22.30040 -22.16214 -20.64664 -20.05100 -19.57911 -18.68198 -17.07219 -16.52406 -16.17220 -15.97275 -15.52811 -14.97034 -14.92575 -14.55999 -14.33986 -14.16292 -13.91789 -13.59647 -13.39226 -13.25099 -13.19251 -12.93749 -12.88142 -12.74874 -12.58173 -12.24063 -12.08758 -12.01105 -11.85105 -11.57458 -11.48916 -11.30382 -11.03561 -11.00167 -10.91621 -10.77613 -10.74828 -10.11196 -9.94765 -9.87000 -9.68884 -9.61327 -9.45972 -8.79990 -8.61962 -8.42163 -8.39132 -6.84079 -5.70559 -3.04046 1.27318 1.34992 2.81316 3.14238 3.42269 3.48968 3.51523 3.68839 4.50436 4.53264 4.64827 4.72258 4.78877 4.87645 4.92244 4.99041 5.09029 5.11306 5.16481 5.29434 5.34155 5.40230 5.42357 5.46882 5.49816 5.55555 5.62776 5.64849 5.65853 5.68509 5.76712 5.85554 5.92475 6.01385 6.05339 6.07262 6.13516 6.16233 6.17095 6.37920 6.39735 6.48827 6.51795 6.56427 6.60524 6.72759 6.76405 6.97815 7.06345 7.55690 7.59229 7.63650 7.82645 8.24163 8.39370 9.20953 9.83343 10.49348 11.41811 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013466 B = 0.002882 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.846053 B = 9712.264059 C =10827.377797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.072 4.072 6 C -0.117 4.117 7 C -0.059 4.059 8 C -0.103 4.103 9 C 0.511 3.489 10 O -0.530 6.530 11 N -0.609 5.609 12 C 0.107 3.893 13 C -0.120 4.120 14 C -0.112 4.112 15 H 0.076 0.924 16 C -0.138 4.138 17 C 0.179 3.821 18 N -0.593 5.593 19 C -0.227 4.227 20 H 0.080 0.920 21 C -0.007 4.007 22 N -0.922 5.922 23 Si 0.909 3.091 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.156 3.844 28 H 0.024 0.976 29 C 0.117 3.883 30 C -0.104 4.104 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.038 0.962 49 H 0.251 0.749 50 H 0.068 0.932 51 H 0.091 0.909 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.485 7.267 -20.367 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.072 4.072 6 C -0.173 4.173 7 C -0.060 4.060 8 C -0.143 4.143 9 C 0.298 3.702 10 O -0.406 6.406 11 N -0.343 5.343 12 C -0.016 4.016 13 C -0.159 4.159 14 C -0.131 4.131 15 H 0.094 0.906 16 C -0.176 4.176 17 C 0.054 3.946 18 N -0.318 5.318 19 C -0.355 4.355 20 H 0.097 0.903 21 C -0.203 4.203 22 N -0.570 5.570 23 Si 0.739 3.261 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.047 3.953 28 H 0.041 0.959 29 C -0.005 4.005 30 C -0.122 4.122 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.086 0.914 51 H 0.110 0.890 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.583 7.601 -19.611 23.545 hybrid contribution -0.144 0.062 1.001 1.013 sum -10.728 7.663 -18.610 22.806 Atomic orbital electron populations 1.20758 0.91368 1.02741 1.01978 1.19812 0.95892 0.93108 1.00643 1.20957 0.94145 0.97333 1.01292 1.20951 0.94138 0.97317 1.01082 1.19686 0.95934 0.92556 0.99044 1.20825 0.91357 1.03354 1.01808 1.19140 0.93302 0.93235 1.00305 1.20747 1.01721 0.96161 0.95648 1.20437 0.78210 0.80674 0.90833 1.90732 1.53366 1.50380 1.46147 1.48347 1.55474 1.22336 1.08138 1.21771 0.96479 0.94491 0.88829 1.21815 0.95093 1.01003 0.97978 1.22242 0.98110 0.98886 0.93907 0.90597 1.22716 0.95021 0.99875 0.99981 1.21524 0.90945 0.94807 0.87286 1.44342 1.34814 1.52885 0.99756 1.19110 1.13089 1.22128 0.81151 0.90256 1.24777 0.98241 0.99454 0.97852 1.69949 1.24015 1.34464 1.28559 0.86082 0.77850 0.77593 0.84561 1.20372 1.21773 1.21754 1.21086 0.91559 0.94433 0.88213 0.95880 1.21690 0.96815 1.01409 0.80599 1.20819 0.93232 0.97562 1.00598 0.91432 0.91628 0.91691 0.86356 0.86185 0.91252 0.91411 0.91462 0.87982 0.88307 0.90341 0.91677 0.91417 0.90872 0.92221 0.92572 0.92719 0.94387 0.93837 0.91362 0.89046 0.86354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 36.01 0.36 -0.56 16 2 C -0.09 -1.04 5.88 -104.62 -0.62 -1.66 16 3 C -0.12 -1.29 9.70 -39.58 -0.38 -1.67 16 4 C -0.12 -1.33 9.70 -39.58 -0.38 -1.72 16 5 C -0.07 -0.89 5.88 -104.62 -0.62 -1.51 16 6 C -0.12 -1.28 9.22 36.01 0.33 -0.95 16 7 C -0.06 -0.74 4.37 -104.62 -0.46 -1.20 16 8 C -0.10 -1.14 3.48 -29.03 -0.10 -1.24 16 9 C 0.51 7.90 6.89 -10.98 -0.08 7.82 16 10 O -0.53 -10.58 15.40 5.56 0.09 -10.49 16 11 N -0.61 -9.18 3.01 -172.59 -0.52 -9.70 16 12 C 0.11 1.19 6.23 -3.43 -0.02 1.17 16 13 C -0.12 -1.46 5.72 -26.79 -0.15 -1.62 16 14 C -0.11 -1.85 2.57 -89.51 -0.23 -2.08 16 15 H 0.08 1.30 8.13 -51.93 -0.42 0.88 16 16 C -0.14 -2.46 6.56 -25.15 -0.17 -2.63 16 17 C 0.18 4.27 5.46 -1.91 -0.01 4.26 16 18 N -0.59 -14.97 3.37 -162.47 -0.55 -15.52 16 19 C -0.23 -6.33 9.89 -15.06 -0.15 -6.48 16 20 H 0.08 2.19 7.47 -52.49 -0.39 1.80 16 21 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 22 N -0.92 -27.14 10.43 55.49 0.58 -26.56 16 23 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 C 0.16 3.19 2.79 -67.50 -0.19 3.00 16 28 H 0.02 0.52 7.93 -51.93 -0.41 0.11 16 29 C 0.12 2.24 5.75 -3.94 -0.02 2.21 16 30 C -0.10 -1.23 9.34 -39.58 -0.37 -1.60 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 33 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.71 8.09 -51.92 -0.42 0.29 16 38 H 0.07 0.84 6.16 -51.93 -0.32 0.52 16 39 H 0.10 0.93 6.40 -51.93 -0.33 0.60 16 40 H 0.10 0.85 7.90 -51.93 -0.41 0.44 16 41 H 0.08 0.64 5.85 -51.93 -0.30 0.33 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.85 7.98 -51.93 -0.41 0.43 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 47 H 0.05 1.45 7.20 -51.93 -0.37 1.07 16 48 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 49 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 50 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 51 H 0.09 2.00 6.80 -51.93 -0.35 1.65 16 52 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 401.33 15.07 6.05 6.05 Total: -1.00 -33.50 401.33 -11.48 -44.98 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -8.76 Total: 0.46 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -3.35 Total: -6.75 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.49 Total: -51.78 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.50 -11.48 -44.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042212562.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.666 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds