Wall clock time and date at job start Wed Apr 1 2020 01:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38259 * 119.99748 * 2 1 4 4 C 1.38212 * 119.99979 * 180.02562 * 3 2 1 5 5 C 1.38256 * 120.00192 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99975 * 179.97438 * 5 4 3 7 7 C 1.38210 * 119.99841 * 359.96092 * 5 4 3 8 8 C 1.50703 * 120.00073 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47064 * 84.99570 * 8 7 5 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46594 * 119.75339 * 0.02562 * 11 9 8 13 13 C 1.53888 * 110.70402 * 227.74774 * 12 11 9 14 14 C 1.51982 * 107.29355 * 308.18478 * 13 12 11 15 15 H 1.09005 * 111.01492 * 303.48315 * 14 13 12 16 16 C 1.53702 * 115.00508 * 176.26246 * 14 13 12 17 17 C 1.56175 * 101.41084 * 206.98858 * 16 14 13 18 18 N 1.48151 * 107.35176 * 21.45694 * 17 16 14 19 19 C 1.36932 * 126.40167 * 185.61327 * 18 17 16 20 20 H 1.08005 * 120.00478 * 180.02562 * 19 18 17 21 21 C 1.38813 * 119.99901 * 359.97438 * 19 18 17 22 22 N 1.31620 * 119.99868 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00165 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47373 * 59.99885 * 23 21 19 25 25 H 1.48505 * 109.46915 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46895 * 299.99923 * 23 21 19 27 27 C 1.45512 * 107.20155 * 5.61013 * 18 17 16 28 28 H 1.09000 * 109.57034 * 86.62447 * 27 18 17 29 29 C 1.47795 * 119.75110 * 179.72997 * 11 9 8 30 30 C 1.38215 * 120.00396 * 180.21284 * 2 1 3 31 31 H 1.08997 * 109.47224 * 90.00091 * 1 2 3 32 32 H 1.09004 * 109.47112 * 209.99667 * 1 2 3 33 33 H 1.08999 * 109.47393 * 329.99679 * 1 2 3 34 34 H 1.08003 * 120.00052 * 359.97438 * 3 2 1 35 35 H 1.08002 * 120.00064 * 179.97438 * 4 3 2 36 36 H 1.08996 * 109.47276 * 269.97936 * 6 5 4 37 37 H 1.08995 * 109.47463 * 29.98220 * 6 5 4 38 38 H 1.09002 * 109.46726 * 149.98103 * 6 5 4 39 39 H 1.09002 * 109.47152 * 324.99663 * 8 7 5 40 40 H 1.09001 * 109.46980 * 204.99763 * 8 7 5 41 41 H 1.08995 * 109.23357 * 348.06634 * 12 11 9 42 42 H 1.08997 * 109.22607 * 107.43274 * 12 11 9 43 43 H 1.08995 * 109.89165 * 67.63058 * 13 12 11 44 44 H 1.08999 * 109.88810 * 188.66635 * 13 12 11 45 45 H 1.08994 * 110.95586 * 324.66217 * 16 14 13 46 46 H 1.09001 * 110.95861 * 88.40324 * 16 14 13 47 47 H 1.08998 * 109.26673 * 262.28656 * 17 16 14 48 48 H 1.09000 * 110.43759 * 141.28275 * 17 16 14 49 49 H 0.96998 * 120.00103 * 180.02562 * 22 21 19 50 50 H 1.08996 * 110.06504 * 247.96284 * 29 11 9 51 51 H 1.08998 * 110.06750 * 9.52458 * 29 11 9 52 52 H 1.07997 * 119.99856 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0005 5 6 4.2717 0.0002 -0.0005 6 6 5.7787 0.0003 -0.0017 7 6 3.5807 -1.1968 0.0008 8 6 4.3343 -2.5019 0.0002 9 6 4.6947 -2.8745 1.4153 10 8 4.3711 -2.1516 2.3338 11 7 5.3758 -4.0115 1.6601 12 6 5.7637 -4.8814 0.5458 13 6 5.4054 -6.3469 0.8494 14 6 5.9928 -6.6830 2.2102 15 1 7.0675 -6.5014 2.2277 16 6 5.6607 -8.0903 2.7315 17 6 5.7424 -7.8748 4.2762 18 7 5.5669 -6.4258 4.5300 19 6 5.6779 -5.7934 5.7395 20 1 5.5278 -4.7259 5.8066 21 6 5.9825 -6.5244 6.8795 22 7 6.1640 -7.8255 6.7980 23 14 6.1332 -5.6619 8.5296 24 1 4.8462 -4.9995 8.8614 25 1 6.4620 -6.6582 9.5807 26 1 7.2108 -4.6425 8.4586 27 6 5.2546 -5.8001 3.2539 28 1 4.1801 -5.8479 3.0771 29 6 5.7317 -4.3685 3.0494 30 6 2.1981 -1.1969 -0.0044 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 1.6582 2.1327 -0.0004 35 1 4.1203 2.1328 -0.0010 36 1 6.1412 -0.0005 -1.0296 37 1 6.1424 0.8906 0.5111 38 1 6.1424 -0.8893 0.5126 39 1 5.2441 -2.3959 -0.5905 40 1 3.7087 -3.2824 -0.4329 41 1 5.2414 -4.5636 -0.3565 42 1 6.8387 -4.8006 0.3847 43 1 4.3223 -6.4665 0.8732 44 1 5.8337 -6.9987 0.0880 45 1 4.6549 -8.3883 2.4357 46 1 6.3977 -8.8168 2.3892 47 1 6.7199 -8.1987 4.6333 48 1 4.9576 -8.4380 4.7810 49 1 6.3764 -8.3364 7.5947 50 1 6.8113 -4.3077 3.1863 51 1 5.2268 -3.7014 3.7481 52 1 1.6582 -2.1322 -0.0083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042212563.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:02 Heat of formation + Delta-G solvation = 8.897902 kcal Electronic energy + Delta-G solvation = -30566.065308 eV Core-core repulsion = 26723.486333 eV Total energy + Delta-G solvation = -3842.578975 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.33 seconds Orbital eigenvalues (eV) -40.48457 -39.46191 -38.04293 -35.33140 -34.30274 -32.88242 -32.49508 -31.21763 -29.69808 -29.39351 -28.58278 -27.47869 -24.90447 -24.67640 -23.69610 -22.28964 -22.17265 -20.62960 -20.06521 -19.58820 -18.67268 -17.06783 -16.53098 -16.17892 -15.96354 -15.52646 -15.01751 -14.84309 -14.59453 -14.32163 -14.13621 -13.92627 -13.63181 -13.44321 -13.26991 -13.12183 -12.91265 -12.86731 -12.74959 -12.62263 -12.22211 -12.08308 -12.01401 -11.85384 -11.57863 -11.48680 -11.30637 -11.03382 -10.99842 -10.90115 -10.79389 -10.71868 -10.15580 -9.97162 -9.83589 -9.68373 -9.60072 -9.46318 -8.79716 -8.61197 -8.42477 -8.37954 -6.84239 -5.70384 -3.04077 1.27199 1.35147 2.81685 3.15445 3.43975 3.47863 3.49755 3.68964 4.51130 4.53417 4.65399 4.72031 4.78240 4.88219 4.92834 4.99985 5.08004 5.12189 5.17844 5.28687 5.35083 5.40997 5.43609 5.46208 5.49612 5.52185 5.62705 5.63999 5.66380 5.68072 5.77750 5.83055 5.92756 6.01733 6.05253 6.08313 6.13695 6.14707 6.17568 6.37708 6.39449 6.49680 6.52466 6.56536 6.59672 6.72986 6.76908 6.97813 7.07118 7.56252 7.59340 7.64227 7.82331 8.24682 8.39834 9.20784 9.83634 10.50338 11.41869 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012877 B = 0.002877 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.831950 B = 9728.533784 C =10684.256712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.074 4.074 6 C -0.116 4.116 7 C -0.059 4.059 8 C -0.103 4.103 9 C 0.511 3.489 10 O -0.530 6.530 11 N -0.609 5.609 12 C 0.108 3.892 13 C -0.120 4.120 14 C -0.112 4.112 15 H 0.076 0.924 16 C -0.139 4.139 17 C 0.178 3.822 18 N -0.592 5.592 19 C -0.228 4.228 20 H 0.079 0.921 21 C -0.006 4.006 22 N -0.922 5.922 23 Si 0.910 3.090 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.157 3.843 28 H 0.023 0.977 29 C 0.117 3.883 30 C -0.103 4.103 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.054 0.946 48 H 0.038 0.962 49 H 0.253 0.747 50 H 0.069 0.931 51 H 0.091 0.909 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.081 10.842 -20.923 23.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.074 4.074 6 C -0.172 4.172 7 C -0.059 4.059 8 C -0.143 4.143 9 C 0.298 3.702 10 O -0.406 6.406 11 N -0.343 5.343 12 C -0.016 4.016 13 C -0.159 4.159 14 C -0.132 4.132 15 H 0.094 0.906 16 C -0.177 4.177 17 C 0.053 3.947 18 N -0.317 5.317 19 C -0.356 4.356 20 H 0.097 0.903 21 C -0.202 4.202 22 N -0.570 5.570 23 Si 0.740 3.260 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.048 3.952 28 H 0.041 0.959 29 C -0.006 4.006 30 C -0.121 4.121 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.057 0.943 49 H 0.063 0.937 50 H 0.087 0.913 51 H 0.109 0.891 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.198 11.151 -20.154 23.413 hybrid contribution 0.125 0.258 0.954 0.996 sum -4.074 11.409 -19.200 22.702 Atomic orbital electron populations 1.20765 0.91332 1.02815 1.02002 1.19821 0.95937 0.93089 1.00470 1.20957 0.94142 0.97339 1.01311 1.20935 0.94145 0.97262 1.01187 1.19662 0.95860 0.92568 0.99328 1.20808 0.91472 1.03168 1.01763 1.19139 0.93322 0.93215 1.00253 1.20750 1.01736 0.96154 0.95650 1.20435 0.77906 0.80997 0.90822 1.90731 1.53090 1.50702 1.46117 1.48316 1.55925 1.21764 1.08293 1.21736 1.00189 0.91008 0.88633 1.21813 1.01427 0.94618 0.98031 1.22254 0.99923 0.97233 0.93760 0.90585 1.22860 0.99958 0.95264 0.99605 1.21677 1.01043 0.84269 0.87678 1.44148 1.82681 1.03228 1.01643 1.19001 1.41236 0.91993 0.83393 0.90339 1.24777 1.01850 0.95739 0.97865 1.69932 1.54307 1.04864 1.27873 0.86223 0.78041 0.78209 0.83486 1.21106 1.21616 1.21091 1.21078 0.95973 0.90747 0.87364 0.95946 1.21823 1.00251 0.97964 0.80526 1.20843 0.93263 0.97638 1.00400 0.91408 0.91545 0.91677 0.86352 0.86231 0.91294 0.91491 0.91567 0.88101 0.88196 0.90377 0.91701 0.91441 0.90877 0.92624 0.92141 0.92790 0.94335 0.93719 0.91315 0.89068 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.00 0.36 -0.60 16 2 C -0.09 -1.05 5.88 -104.62 -0.62 -1.66 16 3 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 4 C -0.12 -1.31 9.70 -39.58 -0.38 -1.70 16 5 C -0.07 -0.90 5.88 -104.63 -0.62 -1.51 16 6 C -0.12 -1.19 9.22 36.00 0.33 -0.85 16 7 C -0.06 -0.74 4.37 -104.62 -0.46 -1.19 16 8 C -0.10 -1.14 3.48 -29.03 -0.10 -1.25 16 9 C 0.51 7.92 6.89 -10.98 -0.08 7.85 16 10 O -0.53 -10.60 15.40 5.56 0.09 -10.52 16 11 N -0.61 -9.22 3.00 -172.46 -0.52 -9.73 16 12 C 0.11 1.20 6.22 -3.53 -0.02 1.18 16 13 C -0.12 -1.48 5.72 -26.79 -0.15 -1.63 16 14 C -0.11 -1.86 2.57 -89.51 -0.23 -2.09 16 15 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 16 C -0.14 -2.49 6.63 -24.66 -0.16 -2.65 16 17 C 0.18 4.26 5.47 -1.43 -0.01 4.25 16 18 N -0.59 -15.01 3.35 -162.07 -0.54 -15.55 16 19 C -0.23 -6.39 9.88 -15.06 -0.15 -6.54 16 20 H 0.08 2.16 7.42 -52.48 -0.39 1.77 16 21 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 22 N -0.92 -27.14 10.43 55.49 0.58 -26.56 16 23 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 24 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.16 3.24 2.79 -67.57 -0.19 3.05 16 28 H 0.02 0.51 7.93 -51.93 -0.41 0.10 16 29 C 0.12 2.23 5.72 -3.70 -0.02 2.21 16 30 C -0.10 -1.26 9.34 -39.58 -0.37 -1.63 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 34 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 38 H 0.07 0.76 6.16 -51.93 -0.32 0.44 16 39 H 0.10 0.88 6.84 -51.93 -0.36 0.53 16 40 H 0.10 0.90 7.46 -51.93 -0.39 0.51 16 41 H 0.08 0.64 5.84 -51.93 -0.30 0.34 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.86 7.98 -51.93 -0.41 0.44 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.05 1.43 7.21 -51.93 -0.37 1.05 16 48 H 0.04 1.02 7.76 -51.93 -0.40 0.62 16 49 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 50 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 51 H 0.09 2.00 6.76 -51.93 -0.35 1.65 16 52 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 401.22 15.07 6.05 6.05 Total: -1.00 -33.48 401.22 -11.47 -44.95 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -8.75 Total: 0.56 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -3.34 Total: -6.72 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.48 Total: -51.85 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.48 -11.47 -44.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042212563.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.843 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.33 seconds