Wall clock time and date at job start Wed Apr 1 2020 01:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38232 * 120.00169 * 2 1 4 4 C 1.38233 * 120.00568 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.00317 * 180.02562 * 4 3 2 6 6 C 1.38235 * 119.99578 * 359.97438 * 4 3 2 7 7 C 1.38236 * 120.00103 * 359.97438 * 6 4 3 8 8 C 1.50701 * 119.99961 * 179.97438 * 7 6 4 9 9 C 1.50703 * 109.46836 * 90.00379 * 8 7 6 10 10 O 1.21278 * 120.00103 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00027 * 179.97438 * 9 8 7 12 12 C 1.46815 * 119.90253 * 0.10880 * 11 9 8 13 13 C 1.53887 * 110.77402 * 132.20990 * 12 11 9 14 14 C 1.51975 * 107.28796 * 51.82489 * 13 12 11 15 15 H 1.08991 * 111.56916 * 56.84781 * 14 13 12 16 16 C 1.53701 * 115.00220 * 184.55437 * 14 13 12 17 17 C 1.55297 * 101.81609 * 153.46334 * 16 14 13 18 18 N 1.48160 * 107.04180 * 337.55592 * 17 16 14 19 19 C 1.36935 * 126.39864 * 175.01699 * 18 17 16 20 20 H 1.08005 * 120.00138 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00150 * 359.97438 * 19 18 17 22 22 N 1.31623 * 119.99772 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00175 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47066 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47224 * 119.99879 * 23 21 19 26 26 H 1.48505 * 109.46743 * 239.99838 * 23 21 19 27 27 C 1.45505 * 107.20437 * 354.99413 * 18 17 16 28 28 H 1.08994 * 108.99138 * 273.63933 * 27 18 17 29 29 C 1.47800 * 119.75427 * 179.97438 * 11 9 8 30 30 C 1.38231 * 119.99998 * 180.17325 * 2 1 3 31 31 H 1.09000 * 109.47267 * 89.99345 * 1 2 3 32 32 H 1.09000 * 109.46925 * 209.99635 * 1 2 3 33 33 H 1.09004 * 109.47168 * 329.99649 * 1 2 3 34 34 H 1.08007 * 120.00176 * 0.02562 * 3 2 1 35 35 H 1.09000 * 109.47155 * 269.97340 * 5 4 3 36 36 H 1.08994 * 109.47466 * 29.97750 * 5 4 3 37 37 H 1.09004 * 109.46925 * 149.97765 * 5 4 3 38 38 H 1.07998 * 119.99927 * 180.02562 * 6 4 3 39 39 H 1.08996 * 109.47578 * 330.00407 * 8 7 6 40 40 H 1.09001 * 109.47320 * 209.99930 * 8 7 6 41 41 H 1.08999 * 109.19014 * 11.87962 * 12 11 9 42 42 H 1.09000 * 109.17451 * 252.53127 * 12 11 9 43 43 H 1.08999 * 109.88915 * 292.37429 * 13 12 11 44 44 H 1.09001 * 109.89025 * 171.26713 * 13 12 11 45 45 H 1.09000 * 110.95936 * 271.59554 * 16 14 13 46 46 H 1.09003 * 110.96100 * 35.33422 * 16 14 13 47 47 H 1.08999 * 109.91777 * 96.89821 * 17 16 14 48 48 H 1.09002 * 109.92271 * 218.00340 * 17 16 14 49 49 H 0.97004 * 119.99618 * 180.02562 * 22 21 19 50 50 H 1.09002 * 110.06561 * 112.03994 * 29 11 9 51 51 H 1.09003 * 110.06090 * 350.58492 * 29 11 9 52 52 H 1.07998 * 120.00503 * 0.06331 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3340 2.5023 0.0011 6 6 4.2717 0.0001 0.0016 7 6 3.5805 -1.1971 0.0027 8 6 4.3341 -2.5022 0.0033 9 6 4.5857 -2.9363 1.4243 10 8 4.1923 -2.2529 2.3458 11 7 5.2478 -4.0839 1.6712 12 6 5.7252 -4.9083 0.5541 13 6 7.1928 -5.3193 0.7672 14 6 7.2932 -5.9325 2.1541 15 1 6.6105 -6.7740 2.2706 16 6 8.7162 -6.3089 2.5965 17 6 8.6031 -6.2179 4.1427 18 7 7.4571 -5.3280 4.4426 19 6 6.9466 -5.0504 5.6826 20 1 6.1038 -4.3824 5.7825 21 6 7.5122 -5.6276 6.8112 22 7 8.5390 -6.4421 6.6894 23 14 6.8154 -5.2496 8.5026 24 1 5.6708 -4.3131 8.3683 25 1 6.3533 -6.5086 9.1403 26 1 7.8685 -4.6261 9.3437 27 6 6.9758 -4.8035 3.1736 28 1 7.5474 -3.9111 2.9189 29 6 5.4921 -4.5041 3.0670 30 6 2.1982 -1.1971 -0.0036 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 1.6582 2.1325 0.0004 35 1 4.5165 2.8169 -1.0264 36 1 3.7446 3.2619 0.5145 37 1 5.2861 2.3719 0.5157 38 1 5.3517 0.0001 0.0024 39 1 5.2863 -2.3723 -0.5109 40 1 3.7448 -3.2622 -0.5098 41 1 5.6426 -4.3393 -0.3720 42 1 5.1085 -5.8041 0.4811 43 1 7.8367 -4.4423 0.7017 44 1 7.4854 -6.0524 0.0155 45 1 8.9668 -7.3222 2.2828 46 1 9.4450 -5.5931 2.2162 47 1 8.4234 -7.2084 4.5608 48 1 9.5202 -5.8004 4.5583 49 1 8.9340 -6.8458 7.4781 50 1 4.9130 -5.3989 3.2949 51 1 5.2228 -3.7002 3.7521 52 1 1.6583 -2.1324 -0.0075 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042214227.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:15 Heat of formation + Delta-G solvation = 6.740890 kcal Electronic energy + Delta-G solvation = -30214.668766 eV Core-core repulsion = 26371.996256 eV Total energy + Delta-G solvation = -3842.672511 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.38466 -39.47422 -38.10506 -35.33702 -33.62071 -33.61453 -32.87483 -31.24715 -29.89752 -28.64760 -27.99857 -27.00344 -26.78897 -24.68177 -23.70034 -22.23967 -21.24289 -20.83480 -20.07340 -19.62466 -18.70366 -17.05423 -16.51966 -16.37794 -16.02639 -15.56661 -15.00950 -14.84361 -14.35881 -14.28086 -14.17946 -13.95208 -13.61662 -13.37257 -13.32800 -13.09787 -13.04220 -12.88601 -12.73223 -12.68353 -12.32973 -12.23145 -11.92532 -11.78737 -11.57277 -11.47047 -11.30403 -11.08632 -11.06456 -10.92206 -10.78333 -10.75055 -10.11056 -9.95291 -9.86163 -9.68205 -9.59407 -9.45457 -8.64188 -8.61786 -8.58802 -8.38039 -6.83969 -5.70655 -3.04185 1.28331 1.33250 2.82408 3.14833 3.42300 3.48957 3.51584 3.68867 4.50051 4.53114 4.63662 4.68078 4.71540 4.88389 4.99298 5.03902 5.11875 5.15401 5.18343 5.21704 5.36203 5.39539 5.39986 5.44549 5.46432 5.49544 5.52929 5.63318 5.69110 5.70242 5.72581 5.77616 5.92851 6.02190 6.06259 6.07792 6.10746 6.14437 6.17848 6.40588 6.46440 6.47445 6.50261 6.57305 6.57486 6.73634 6.76924 6.97393 7.07314 7.56323 7.59749 7.64479 7.82786 8.24336 8.40022 9.20704 9.83566 10.50111 11.41791 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012738 B = 0.002736 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.687810 B =10232.350769 C =11306.791538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.124 4.124 4 C -0.083 4.083 5 C -0.113 4.113 6 C -0.110 4.110 7 C -0.054 4.054 8 C -0.102 4.102 9 C 0.511 3.489 10 O -0.532 6.532 11 N -0.609 5.609 12 C 0.108 3.892 13 C -0.119 4.119 14 C -0.113 4.113 15 H 0.077 0.923 16 C -0.138 4.138 17 C 0.177 3.823 18 N -0.593 5.593 19 C -0.226 4.226 20 H 0.080 0.920 21 C -0.007 4.007 22 N -0.922 5.922 23 Si 0.909 3.091 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.156 3.844 28 H 0.023 0.977 29 C 0.117 3.883 30 C -0.111 4.111 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.119 0.881 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.037 0.963 49 H 0.251 0.749 50 H 0.068 0.932 51 H 0.091 0.909 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.364 8.887 -20.803 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.128 4.128 7 C -0.054 4.054 8 C -0.142 4.142 9 C 0.298 3.702 10 O -0.408 6.408 11 N -0.343 5.343 12 C -0.015 4.015 13 C -0.158 4.158 14 C -0.132 4.132 15 H 0.095 0.905 16 C -0.176 4.176 17 C 0.053 3.947 18 N -0.318 5.318 19 C -0.355 4.355 20 H 0.098 0.902 21 C -0.203 4.203 22 N -0.570 5.570 23 Si 0.740 3.260 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.047 3.953 28 H 0.041 0.959 29 C -0.005 4.005 30 C -0.129 4.129 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.137 0.863 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.055 0.945 49 H 0.062 0.938 50 H 0.087 0.913 51 H 0.109 0.891 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.532 9.193 -20.039 24.020 hybrid contribution -0.150 -0.032 0.990 1.001 sum -9.682 9.161 -19.050 23.250 Atomic orbital electron populations 1.20771 0.91310 1.02811 1.02034 1.19818 0.95901 0.93051 0.99645 1.20844 0.93490 0.97369 1.02461 1.19828 0.93806 0.95169 0.99505 1.20777 1.00076 0.94080 1.02061 1.20830 0.99530 0.91455 1.00993 1.19258 0.93481 0.93598 0.99083 1.20734 1.01896 0.96012 0.95525 1.20447 0.78202 0.80553 0.90955 1.90730 1.50739 1.53102 1.46212 1.48358 1.55795 1.22425 1.07720 1.21772 0.95833 0.95230 0.88682 1.21795 0.95245 1.00825 0.97935 1.22259 0.98366 0.98841 0.93781 0.90455 1.22729 0.95230 0.99895 0.99777 1.21537 0.90285 0.95403 0.87511 1.44191 1.34385 1.53129 1.00087 1.19099 1.11573 1.22952 0.81827 0.90237 1.24780 0.98189 0.99512 0.97841 1.69957 1.24841 1.34340 1.27822 0.86075 0.78204 0.77465 0.84295 1.20366 1.21760 1.21754 1.20985 0.92136 0.94383 0.87749 0.95938 1.21687 0.97629 1.00785 0.80436 1.20804 0.93343 0.97527 1.01234 0.91357 0.91540 0.91652 0.86400 0.91332 0.91643 0.91456 0.86332 0.88070 0.88178 0.90361 0.91671 0.91411 0.90847 0.92243 0.92591 0.92658 0.94451 0.93837 0.91322 0.89090 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.01 0.36 -0.58 16 2 C -0.08 -0.94 5.88 -104.63 -0.62 -1.55 16 3 C -0.12 -1.35 9.36 -39.59 -0.37 -1.72 16 4 C -0.08 -0.94 5.88 -104.63 -0.62 -1.56 16 5 C -0.11 -0.99 10.01 36.00 0.36 -0.63 16 6 C -0.11 -1.35 9.36 -39.58 -0.37 -1.72 16 7 C -0.05 -0.67 4.37 -104.62 -0.46 -1.13 16 8 C -0.10 -1.12 4.17 -29.03 -0.12 -1.24 16 9 C 0.51 7.99 7.67 -10.99 -0.08 7.90 16 10 O -0.53 -10.74 15.40 5.56 0.09 -10.66 16 11 N -0.61 -9.28 3.02 -172.59 -0.52 -9.80 16 12 C 0.11 1.21 6.23 -3.41 -0.02 1.19 16 13 C -0.12 -1.47 5.72 -26.79 -0.15 -1.62 16 14 C -0.11 -1.88 2.61 -89.51 -0.23 -2.11 16 15 H 0.08 1.34 8.13 -51.93 -0.42 0.91 16 16 C -0.14 -2.49 6.54 -25.15 -0.16 -2.65 16 17 C 0.18 4.25 5.45 -1.91 -0.01 4.24 16 18 N -0.59 -15.04 3.35 -162.93 -0.55 -15.59 16 19 C -0.23 -6.35 9.88 -15.06 -0.15 -6.49 16 20 H 0.08 2.20 7.41 -52.48 -0.39 1.82 16 21 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 22 N -0.92 -27.19 10.44 55.49 0.58 -26.61 16 23 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 27 C 0.16 3.23 2.75 -67.84 -0.19 3.04 16 28 H 0.02 0.51 7.94 -51.93 -0.41 0.10 16 29 C 0.12 2.25 5.68 -3.97 -0.02 2.23 16 30 C -0.11 -1.33 9.36 -39.58 -0.37 -1.70 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 37 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.10 0.89 7.50 -51.93 -0.39 0.51 16 40 H 0.10 0.85 7.94 -51.93 -0.41 0.44 16 41 H 0.08 0.64 5.87 -51.93 -0.30 0.33 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.86 7.99 -51.93 -0.41 0.44 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 47 H 0.06 1.47 7.21 -51.93 -0.37 1.09 16 48 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 49 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 50 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 51 H 0.09 2.01 6.75 -51.93 -0.35 1.66 16 52 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 405.82 15.07 6.12 6.12 Total: -1.00 -33.72 405.82 -11.55 -45.27 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -8.91 Total: 0.11 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -3.32 Total: -6.41 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.49 Total: -52.00 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.72 -11.55 -45.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042214227.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.008 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds