Wall clock time and date at job start Wed Apr 1 2020 01:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38243 * 120.00297 * 2 1 4 4 C 1.38230 * 120.00092 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99865 * 180.02562 * 4 3 2 6 6 C 1.38235 * 120.00326 * 359.97438 * 4 3 2 7 7 C 1.38234 * 119.99814 * 359.97438 * 6 4 3 8 8 C 1.50706 * 120.00196 * 179.97438 * 7 6 4 9 9 C 1.50703 * 109.46655 * 90.00209 * 8 7 6 10 10 O 1.21274 * 120.00126 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99437 * 180.02562 * 9 8 7 12 12 C 1.47151 * 121.21851 * 359.71709 * 11 9 8 13 13 C 1.52341 * 108.24352 * 237.25385 * 12 11 9 14 14 C 1.53087 * 110.64654 * 302.86792 * 13 12 11 15 15 H 1.08996 * 113.06442 * 288.88739 * 14 13 12 16 16 C 1.55543 * 106.72375 * 164.86373 * 14 13 12 17 17 C 1.54507 * 102.21262 * 282.28048 * 16 14 13 18 18 N 1.47438 * 107.14342 * 336.66705 * 17 16 14 19 19 C 1.36940 * 126.05522 * 178.39272 * 18 17 16 20 20 H 1.07998 * 119.99731 * 179.97438 * 19 18 17 21 21 C 1.38807 * 120.00011 * 359.97438 * 19 18 17 22 22 N 1.31623 * 120.00438 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99920 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47046 * 90.00017 * 23 21 19 25 25 H 1.48498 * 109.47046 * 210.00013 * 23 21 19 26 26 H 1.48503 * 109.46935 * 329.99825 * 23 21 19 27 27 C 1.46463 * 107.88104 * 358.37420 * 18 17 16 28 28 H 1.08996 * 108.42288 * 270.75974 * 27 18 17 29 29 C 1.46760 * 121.21227 * 180.02562 * 11 9 8 30 30 C 1.38234 * 120.00085 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47298 * 89.99386 * 1 2 3 32 32 H 1.09003 * 109.47259 * 209.99855 * 1 2 3 33 33 H 1.09009 * 109.46811 * 329.99497 * 1 2 3 34 34 H 1.08001 * 119.99557 * 359.97438 * 3 2 1 35 35 H 1.09002 * 109.46961 * 269.97678 * 5 4 3 36 36 H 1.08993 * 109.47341 * 29.98207 * 5 4 3 37 37 H 1.09001 * 109.46864 * 149.98291 * 5 4 3 38 38 H 1.08000 * 120.00616 * 179.72578 * 6 4 3 39 39 H 1.08998 * 109.47268 * 210.00355 * 8 7 6 40 40 H 1.08998 * 109.47151 * 330.00502 * 8 7 6 41 41 H 1.09005 * 109.75742 * 356.90160 * 12 11 9 42 42 H 1.08994 * 109.76307 * 117.65638 * 12 11 9 43 43 H 1.09000 * 109.31967 * 182.50158 * 13 12 11 44 44 H 1.09006 * 109.08680 * 63.09232 * 13 12 11 45 45 H 1.08999 * 111.39414 * 163.94188 * 16 14 13 46 46 H 1.09002 * 110.71058 * 40.30887 * 16 14 13 47 47 H 1.08995 * 109.89705 * 217.28966 * 17 16 14 48 48 H 1.08994 * 110.04992 * 96.12912 * 17 16 14 49 49 H 0.96998 * 120.00023 * 179.97438 * 22 21 19 50 50 H 1.09005 * 109.22330 * 247.80901 * 29 11 9 51 51 H 1.09003 * 109.22317 * 7.20451 * 29 11 9 52 52 H 1.08005 * 119.99822 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3340 2.5022 0.0011 6 6 4.2717 0.0000 0.0016 7 6 3.5805 -1.1971 0.0027 8 6 4.3340 -2.5023 0.0033 9 6 4.5856 -2.9363 1.4243 10 8 4.1915 -2.2534 2.3458 11 7 5.2486 -4.0835 1.6711 12 6 5.7332 -4.9356 0.5736 13 6 5.1301 -6.3239 0.7457 14 6 5.4893 -6.9023 2.1168 15 1 6.5399 -7.1801 2.2011 16 6 4.5373 -8.1087 2.3571 17 6 3.2192 -7.4098 2.7588 18 7 3.5747 -6.0757 3.2760 19 6 2.6962 -5.1197 3.7115 20 1 3.0656 -4.1714 4.0728 21 6 1.3310 -5.3695 3.6884 22 7 0.8807 -6.5251 3.2475 23 14 0.1327 -4.0657 4.2831 24 1 -0.2587 -3.1968 3.1442 25 1 -1.0758 -4.7225 4.8428 26 1 0.7801 -3.2414 5.3351 27 6 5.0339 -5.9543 3.2418 28 1 5.4325 -6.3242 4.1864 29 6 5.5078 -4.5318 3.0443 30 6 2.1981 -1.1971 0.0005 31 1 -0.3633 0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5140 34 1 1.6582 2.1325 -0.0004 35 1 4.5164 2.8169 -1.0264 36 1 3.7447 3.2618 0.5146 37 1 5.2861 2.3718 0.5156 38 1 5.3517 -0.0001 -0.0025 39 1 3.7447 -3.2623 -0.5099 40 1 5.2862 -2.3724 -0.5109 41 1 5.4217 -4.5166 -0.3833 42 1 6.8205 -5.0019 0.6110 43 1 5.5130 -6.9826 -0.0338 44 1 4.0458 -6.2549 0.6575 45 1 4.8988 -8.7458 3.1642 46 1 4.4061 -8.6846 1.4410 47 1 2.7152 -7.9863 3.5345 48 1 2.5693 -7.3098 1.8896 49 1 -0.0733 -6.6998 3.2318 50 1 6.5783 -4.4795 3.2429 51 1 4.9813 -3.8788 3.7404 52 1 1.6581 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042214229.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:27 Heat of formation + Delta-G solvation = 8.350074 kcal Electronic energy + Delta-G solvation = -31576.256450 eV Core-core repulsion = 27733.653719 eV Total energy + Delta-G solvation = -3842.602731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.12791 -39.30088 -37.89224 -34.92445 -33.38808 -33.34541 -32.78883 -31.16665 -29.54715 -28.40567 -27.92756 -26.82562 -26.54590 -24.58546 -23.74544 -22.50357 -21.10723 -20.59440 -19.94936 -19.31408 -18.12165 -16.71744 -16.52027 -16.14851 -15.75418 -15.34384 -14.91774 -14.63259 -14.22110 -14.10094 -13.94253 -13.88779 -13.44747 -13.18661 -13.15875 -12.86087 -12.78549 -12.73799 -12.57980 -12.47477 -12.09762 -11.92679 -11.63051 -11.55565 -11.34386 -11.30036 -11.19869 -10.88556 -10.83215 -10.81451 -10.74361 -10.65637 -10.08474 -9.82464 -9.79533 -9.61485 -9.46794 -9.23313 -8.50068 -8.38717 -8.33921 -8.04929 -6.73331 -5.61098 -2.92666 1.53216 1.58214 3.19711 3.49751 3.50168 3.54332 3.60148 3.95196 4.61225 4.77708 4.87339 4.92425 4.97167 5.10021 5.21861 5.28147 5.32402 5.36746 5.41590 5.47814 5.53390 5.55450 5.56332 5.66678 5.68544 5.70919 5.73868 5.76161 5.76472 5.83944 5.85982 6.00452 6.01923 6.07417 6.16274 6.29869 6.31394 6.32801 6.35529 6.46566 6.51927 6.65277 6.69207 6.74381 6.78223 6.84565 6.97146 7.14712 7.22782 7.64620 7.67463 7.94354 7.98067 8.33526 8.78571 9.33008 9.93680 10.57877 11.51228 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010680 B = 0.004481 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.068227 B = 6247.665001 C = 7962.383924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.081 4.081 3 C -0.125 4.125 4 C -0.088 4.088 5 C -0.110 4.110 6 C -0.112 4.112 7 C -0.051 4.051 8 C -0.100 4.100 9 C 0.524 3.476 10 O -0.527 6.527 11 N -0.597 5.597 12 C 0.111 3.889 13 C -0.123 4.123 14 C -0.100 4.100 15 H 0.073 0.927 16 C -0.145 4.145 17 C 0.178 3.822 18 N -0.589 5.589 19 C -0.209 4.209 20 H 0.081 0.919 21 C -0.008 4.008 22 N -0.927 5.927 23 Si 0.904 3.096 24 H -0.290 1.290 25 H -0.294 1.294 26 H -0.282 1.282 27 C 0.153 3.847 28 H 0.026 0.974 29 C 0.115 3.885 30 C -0.104 4.104 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.039 0.961 48 H 0.045 0.955 49 H 0.248 0.752 50 H 0.052 0.948 51 H 0.094 0.906 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.689 8.074 -11.181 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.081 4.081 3 C -0.143 4.143 4 C -0.088 4.088 5 C -0.167 4.167 6 C -0.130 4.130 7 C -0.051 4.051 8 C -0.140 4.140 9 C 0.311 3.689 10 O -0.402 6.402 11 N -0.330 5.330 12 C -0.012 4.012 13 C -0.161 4.161 14 C -0.120 4.120 15 H 0.092 0.908 16 C -0.183 4.183 17 C 0.054 3.946 18 N -0.314 5.314 19 C -0.338 4.338 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.575 5.575 23 Si 0.735 3.265 24 H -0.217 1.217 25 H -0.220 1.220 26 H -0.207 1.207 27 C 0.045 3.955 28 H 0.043 0.957 29 C -0.009 4.009 30 C -0.122 4.122 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.134 0.866 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.099 0.901 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.058 0.942 48 H 0.063 0.937 49 H 0.059 0.941 50 H 0.070 0.930 51 H 0.112 0.888 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.213 8.487 -10.627 16.427 hybrid contribution -0.774 0.333 0.336 0.907 sum 8.438 8.820 -10.291 15.966 Atomic orbital electron populations 1.20791 0.91401 1.02991 1.01972 1.19829 0.95932 0.93016 0.99368 1.20810 0.93476 0.97244 1.02814 1.19757 0.93764 0.95001 1.00293 1.20739 0.99861 0.94228 1.01833 1.20743 0.99153 0.91445 1.01696 1.19257 0.93488 0.93549 0.98805 1.20687 1.01402 0.96042 0.95900 1.20151 0.77359 0.80719 0.90664 1.90703 1.49580 1.53802 1.46131 1.47804 1.56597 1.21481 1.07144 1.21537 0.98128 0.91596 0.89927 1.21732 1.02964 0.94796 0.96629 1.22265 0.97800 0.96690 0.95243 0.90841 1.23080 0.98664 0.96624 0.99956 1.21212 0.90513 0.84849 0.98046 1.44306 0.98703 1.13855 1.74562 1.19046 0.86485 0.94318 1.33924 0.90119 1.24666 0.96666 0.97032 1.01932 1.69961 1.12465 1.22041 1.53071 0.86209 0.80844 0.80847 0.78589 1.21713 1.22044 1.20736 1.20718 0.87479 0.92135 0.95197 0.95669 1.21341 0.98491 0.97575 0.83448 1.20934 0.93535 0.97839 0.99918 0.91374 0.91271 0.91757 0.86562 0.91539 0.91803 0.91717 0.86621 0.88170 0.88681 0.90540 0.91937 0.92071 0.90077 0.92705 0.92361 0.94241 0.93698 0.94130 0.92955 0.88799 0.86068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 10.01 36.00 0.36 -1.13 16 2 C -0.08 -1.24 5.88 -104.62 -0.62 -1.85 16 3 C -0.13 -1.73 9.36 -39.58 -0.37 -2.10 16 4 C -0.09 -1.19 5.88 -104.63 -0.62 -1.80 16 5 C -0.11 -1.10 10.01 36.01 0.36 -0.74 16 6 C -0.11 -1.62 9.36 -39.58 -0.37 -1.99 16 7 C -0.05 -0.80 4.37 -104.62 -0.46 -1.26 16 8 C -0.10 -1.47 4.20 -29.03 -0.12 -1.59 16 9 C 0.52 9.84 7.71 -10.98 -0.08 9.75 16 10 O -0.53 -12.24 15.49 5.56 0.09 -12.16 16 11 N -0.60 -10.31 2.98 -174.41 -0.52 -10.83 16 12 C 0.11 1.48 6.32 -4.02 -0.03 1.45 16 13 C -0.12 -1.84 5.03 -27.02 -0.14 -1.97 16 14 C -0.10 -1.63 3.63 -88.70 -0.32 -1.95 16 15 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 16 C -0.14 -2.59 6.35 -24.59 -0.16 -2.75 16 17 C 0.18 4.23 4.59 -2.74 -0.01 4.21 16 18 N -0.59 -14.56 3.17 -164.44 -0.52 -15.08 16 19 C -0.21 -5.90 9.70 -15.06 -0.15 -6.04 16 20 H 0.08 2.36 6.52 -52.49 -0.34 2.02 16 21 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 22 N -0.93 -27.54 10.38 55.49 0.58 -26.96 16 23 Si 0.90 23.77 29.55 -169.99 -5.02 18.75 16 24 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 25 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 26 H -0.28 -7.44 7.11 56.52 0.40 -7.03 16 27 C 0.15 3.05 3.00 -68.32 -0.20 2.84 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 29 C 0.11 2.15 5.67 -4.79 -0.03 2.13 16 30 C -0.10 -1.75 9.36 -39.58 -0.37 -2.12 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 33 H 0.06 0.74 8.09 -51.92 -0.42 0.32 16 34 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 37 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 38 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.10 1.39 7.72 -51.93 -0.40 0.99 16 40 H 0.09 1.06 7.86 -51.93 -0.41 0.66 16 41 H 0.08 0.85 6.02 -51.93 -0.31 0.54 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 1.53 6.79 -51.93 -0.35 1.18 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.06 0.94 7.98 -51.93 -0.41 0.53 16 47 H 0.04 1.06 7.57 -51.93 -0.39 0.66 16 48 H 0.04 1.18 6.99 -51.93 -0.36 0.82 16 49 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 50 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.09 2.09 5.56 -51.93 -0.29 1.80 16 52 H 0.12 2.11 8.06 -52.48 -0.42 1.68 16 LS Contribution 401.78 15.07 6.05 6.05 Total: -1.00 -33.87 401.78 -11.50 -45.37 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -8.74 Total: 2.10 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -3.41 Total: -7.25 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.46 Total: -52.88 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -5.02 Total: 18.75 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.87 -11.50 -45.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042214229.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.723 kcal (2) G-P(sol) polarization free energy of solvation -33.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds