Wall clock time and date at job start Wed Apr 1 2020 02:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47060 * 2 1 4 4 C 1.38241 * 119.99921 * 90.00449 * 3 2 1 5 5 C 1.38229 * 119.99902 * 179.97438 * 4 3 2 6 6 C 1.38238 * 120.00311 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00079 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47401 * 89.99905 * 7 6 5 9 9 O 1.21277 * 119.99513 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00016 * 179.97438 * 8 7 6 11 11 C 1.47153 * 121.22297 * 0.02562 * 10 8 7 12 12 C 1.52840 * 107.98323 * 122.70137 * 11 10 8 13 13 C 1.53098 * 110.57978 * 57.34016 * 12 11 10 14 14 H 1.08995 * 112.48582 * 71.39846 * 13 12 11 15 15 C 1.56032 * 106.38399 * 195.45251 * 13 12 11 16 16 C 1.54499 * 102.61483 * 78.39067 * 15 13 12 17 17 N 1.47434 * 107.14938 * 22.84457 * 16 15 13 18 18 C 1.36932 * 126.06060 * 181.64567 * 17 16 15 19 19 H 1.08000 * 120.00102 * 174.16853 * 18 17 16 20 20 C 1.38813 * 119.99781 * 354.17927 * 18 17 16 21 21 N 1.31618 * 120.00322 * 6.70833 * 20 18 17 22 22 Si 1.86803 * 119.99667 * 186.70713 * 20 18 17 23 23 H 1.48505 * 109.46902 * 94.98454 * 22 20 18 24 24 H 1.48502 * 109.47113 * 214.98351 * 22 20 18 25 25 H 1.48493 * 109.47094 * 334.98304 * 22 20 18 26 26 C 1.46474 * 107.88055 * 1.61330 * 17 16 15 27 27 H 1.09008 * 108.42158 * 89.91117 * 26 17 16 28 28 C 1.46763 * 121.22312 * 179.71883 * 10 8 7 29 29 C 1.38233 * 119.99895 * 0.25745 * 6 5 4 30 30 C 1.38235 * 120.00093 * 270.02519 * 3 2 1 31 31 H 1.08997 * 109.46947 * 299.99797 * 1 2 3 32 32 H 1.08996 * 109.47524 * 59.99637 * 1 2 3 33 33 H 1.09005 * 109.47258 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.46673 * 240.00688 * 2 1 3 35 35 H 1.08996 * 109.47076 * 120.00655 * 2 1 3 36 36 H 1.08002 * 119.99722 * 359.97438 * 4 3 2 37 37 H 1.08000 * 119.99772 * 179.97438 * 5 4 3 38 38 H 1.08997 * 109.47023 * 329.99538 * 7 6 5 39 39 H 1.09005 * 109.46905 * 210.00255 * 7 6 5 40 40 H 1.09002 * 109.76193 * 242.32503 * 11 10 8 41 41 H 1.09000 * 109.76005 * 3.02862 * 11 10 8 42 42 H 1.08994 * 109.25946 * 177.62985 * 12 11 10 43 43 H 1.09002 * 109.24917 * 297.10114 * 12 11 10 44 44 H 1.09002 * 110.77269 * 196.66607 * 15 13 12 45 45 H 1.08999 * 110.78472 * 319.91045 * 15 13 12 46 46 H 1.08997 * 109.90493 * 142.22484 * 16 15 13 47 47 H 1.08998 * 109.90129 * 263.28684 * 16 15 13 48 48 H 0.96993 * 119.99751 * 180.02562 * 21 20 18 49 49 H 1.09002 * 109.22569 * 352.86457 * 28 10 8 50 50 H 1.08996 * 109.22846 * 112.22288 * 28 10 8 51 51 H 1.07994 * 120.00182 * 179.73105 * 29 6 5 52 52 H 1.07998 * 120.00262 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7240 3.3755 1.1972 6 6 2.9544 4.0272 0.0001 7 6 3.4567 5.4481 0.0001 8 6 4.9637 5.4481 0.0001 9 8 5.5700 4.3978 0.0004 10 7 5.6374 6.6153 -0.0004 11 6 4.9290 7.9051 -0.0003 12 6 5.3907 8.6970 1.2226 13 6 6.9103 8.8819 1.2017 14 1 7.2344 9.5830 0.4327 15 6 7.3192 9.3281 2.6399 16 6 7.2945 7.9980 3.4256 17 7 7.4605 6.9103 2.4443 18 6 7.4628 5.5691 2.7203 19 1 7.4980 4.8518 1.9137 20 6 7.4195 5.1314 4.0370 21 7 7.2435 5.9969 5.0128 22 14 7.6112 3.3139 4.4238 23 1 9.0315 3.0236 4.7459 24 1 6.7580 2.9628 5.5874 25 1 7.1966 2.5107 3.2457 26 6 7.6218 7.5186 1.1216 27 1 8.6840 7.6939 0.9503 28 6 7.1047 6.6467 0.0056 29 6 2.7183 3.3776 -1.1971 30 6 2.2622 2.0726 -1.1971 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 2.0824 1.5633 2.1325 37 1 2.9037 3.8847 2.1325 38 1 3.0933 5.9618 0.8901 39 1 3.0932 5.9619 -0.8898 40 1 5.1687 8.4573 -0.9090 41 1 3.8537 7.7349 0.0544 42 1 4.9095 9.6749 1.2204 43 1 5.1071 8.1590 2.1272 44 1 8.3203 9.7593 2.6409 45 1 6.5952 10.0343 3.0463 46 1 8.1131 7.9768 4.1450 47 1 6.3419 7.8912 3.9444 48 1 7.2137 5.6911 5.9328 49 1 7.4849 5.6338 0.1380 50 1 7.4593 7.0408 -0.9467 51 1 2.8941 3.8882 -2.1323 52 1 2.0814 1.5638 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042249196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:16 Heat of formation + Delta-G solvation = 9.342663 kcal Electronic energy + Delta-G solvation = -31219.873382 eV Core-core repulsion = 27377.313693 eV Total energy + Delta-G solvation = -3842.559689 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.11290 -39.24535 -37.89122 -34.94338 -34.53956 -32.79405 -31.57572 -30.90856 -30.73897 -29.19745 -28.36636 -27.01137 -24.60478 -23.97736 -22.93768 -22.57312 -22.49064 -20.64383 -19.96483 -19.49178 -18.16165 -16.73253 -16.54373 -16.11222 -15.70904 -15.32714 -15.04512 -14.71707 -14.56504 -14.21784 -13.92363 -13.75074 -13.71146 -13.48822 -13.27357 -13.04285 -12.87805 -12.69556 -12.58595 -12.07888 -11.97273 -11.75607 -11.63771 -11.55451 -11.33097 -11.24916 -11.18065 -10.90116 -10.78044 -10.73096 -10.70190 -10.66452 -10.06635 -9.83376 -9.78509 -9.63535 -9.46688 -9.23953 -8.70239 -8.48701 -8.32129 -8.05771 -6.72956 -5.62505 -2.93147 1.48615 1.62334 3.18614 3.48882 3.49586 3.54713 3.62445 3.97459 4.61246 4.72857 4.83706 4.92011 4.97203 5.08849 5.10370 5.16234 5.21295 5.28138 5.34969 5.42805 5.48504 5.53334 5.54203 5.58541 5.68010 5.72235 5.73513 5.74905 5.78912 5.81573 5.94609 6.00480 6.03897 6.07371 6.16012 6.23091 6.25962 6.29653 6.31939 6.46692 6.50452 6.58478 6.65088 6.76169 6.77994 6.81383 6.95891 7.14003 7.19975 7.62340 7.69323 7.95052 7.97322 8.33187 8.77475 9.32668 9.93463 10.58181 11.50318 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011301 B = 0.003892 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.081641 B = 7193.337297 C = 8883.934627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.088 4.088 4 C -0.116 4.116 5 C -0.096 4.096 6 C -0.062 4.062 7 C -0.100 4.100 8 C 0.523 3.477 9 O -0.527 6.527 10 N -0.597 5.597 11 C 0.111 3.889 12 C -0.124 4.124 13 C -0.101 4.101 14 H 0.075 0.925 15 C -0.144 4.144 16 C 0.178 3.822 17 N -0.588 5.588 18 C -0.213 4.213 19 H 0.083 0.917 20 C -0.006 4.006 21 N -0.925 5.925 22 Si 0.899 3.101 23 H -0.291 1.291 24 H -0.294 1.294 25 H -0.277 1.277 26 C 0.154 3.846 27 H 0.026 0.974 28 C 0.114 3.886 29 C -0.105 4.105 30 C -0.120 4.120 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.042 0.958 47 H 0.041 0.959 48 H 0.249 0.751 49 H 0.094 0.906 50 H 0.052 0.948 51 H 0.116 0.884 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.177 1.230 -12.465 17.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.134 4.134 5 C -0.114 4.114 6 C -0.063 4.063 7 C -0.140 4.140 8 C 0.310 3.690 9 O -0.402 6.402 10 N -0.331 5.331 11 C -0.013 4.013 12 C -0.162 4.162 13 C -0.121 4.121 14 H 0.093 0.907 15 C -0.182 4.182 16 C 0.054 3.946 17 N -0.313 5.313 18 C -0.341 4.341 19 H 0.101 0.899 20 C -0.202 4.202 21 N -0.573 5.573 22 Si 0.730 3.270 23 H -0.218 1.218 24 H -0.220 1.220 25 H -0.202 1.202 26 C 0.046 3.954 27 H 0.043 0.957 28 C -0.009 4.009 29 C -0.123 4.123 30 C -0.138 4.138 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.113 0.887 50 H 0.070 0.930 51 H 0.135 0.865 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.861 0.483 -12.265 17.069 hybrid contribution 0.235 -0.719 0.512 0.913 sum -11.627 -0.235 -11.753 16.534 Atomic orbital electron populations 1.21740 0.94952 1.01387 1.02143 1.20519 0.95937 0.93000 1.02701 1.19818 0.99773 0.95964 0.93296 1.20957 1.00244 0.94796 0.97408 1.21050 0.97691 0.94868 0.97776 1.19287 0.98587 0.94912 0.93466 1.20682 0.93617 0.95248 1.04453 1.20181 0.89068 0.83427 0.76332 1.90710 1.69886 1.30750 1.48870 1.47822 1.06909 1.05165 1.73196 1.21645 0.96431 0.84715 0.98464 1.21840 0.95983 0.99251 0.99099 1.22360 0.94964 0.97353 0.97401 0.90681 1.23166 0.99730 0.99647 0.95696 1.21207 1.00516 0.82569 0.90350 1.44294 1.84911 1.02074 1.00037 1.19097 1.42341 0.80764 0.91922 0.89901 1.24690 1.02526 0.97320 0.95646 1.69970 1.56764 1.31893 0.98673 0.86243 0.77456 0.85585 0.77720 1.21837 1.22023 1.20204 1.20587 0.96134 0.90883 0.87838 0.95688 1.21277 0.79222 1.03309 0.97140 1.20884 0.99331 0.94891 0.97155 1.20868 1.00979 0.94770 0.97212 0.92565 0.92670 0.92657 0.91257 0.91150 0.86342 0.85959 0.88198 0.88716 0.91896 0.90521 0.92088 0.90155 0.92780 0.92345 0.93937 0.94109 0.94115 0.88732 0.93006 0.86548 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.89 37.16 0.37 -0.90 16 2 C -0.08 -0.88 6.06 -27.89 -0.17 -1.04 16 3 C -0.09 -1.17 5.13 -104.62 -0.54 -1.71 16 4 C -0.12 -1.70 9.70 -39.58 -0.38 -2.08 16 5 C -0.10 -1.54 9.70 -39.58 -0.38 -1.93 16 6 C -0.06 -0.96 4.37 -104.62 -0.46 -1.41 16 7 C -0.10 -1.43 4.20 -29.03 -0.12 -1.55 16 8 C 0.52 9.71 7.71 -10.99 -0.08 9.63 16 9 O -0.53 -12.18 15.49 5.56 0.09 -12.09 16 10 N -0.60 -10.24 2.98 -174.38 -0.52 -10.76 16 11 C 0.11 1.45 6.36 -3.77 -0.02 1.43 16 12 C -0.12 -1.83 5.04 -26.76 -0.13 -1.96 16 13 C -0.10 -1.63 3.68 -88.43 -0.33 -1.96 16 14 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 15 C -0.14 -2.58 6.32 -24.32 -0.15 -2.73 16 16 C 0.18 4.22 4.61 -2.74 -0.01 4.21 16 17 N -0.59 -14.52 3.19 -164.70 -0.53 -15.04 16 18 C -0.21 -6.00 9.70 -15.06 -0.15 -6.14 16 19 H 0.08 2.42 6.45 -52.49 -0.34 2.09 16 20 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 21 N -0.92 -27.51 10.43 55.49 0.58 -26.94 16 22 Si 0.90 23.58 29.56 -169.99 -5.02 18.55 16 23 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 24 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 25 H -0.28 -7.40 7.11 56.52 0.40 -6.99 16 26 C 0.15 3.06 2.96 -68.55 -0.20 2.86 16 27 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 28 C 0.11 2.13 5.64 -5.02 -0.03 2.10 16 29 C -0.10 -1.46 9.70 -39.58 -0.38 -1.84 16 30 C -0.12 -1.57 9.70 -39.58 -0.38 -1.95 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.66 8.09 -51.92 -0.42 0.24 16 35 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 36 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 38 H 0.10 1.34 7.73 -51.93 -0.40 0.94 16 39 H 0.09 1.03 7.85 -51.93 -0.41 0.63 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.83 6.02 -51.93 -0.31 0.52 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.08 1.50 6.85 -51.93 -0.36 1.14 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 0.94 7.98 -51.93 -0.41 0.53 16 46 H 0.04 1.14 7.45 -51.93 -0.39 0.75 16 47 H 0.04 1.07 7.20 -51.93 -0.37 0.70 16 48 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 49 H 0.09 2.11 5.48 -51.93 -0.28 1.83 16 50 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 52 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 401.95 15.07 6.06 6.06 Total: -1.00 -33.83 401.95 -11.76 -45.59 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -8.75 Total: 1.90 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -3.66 Total: -7.27 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.47 Total: -52.74 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -5.02 Total: 18.55 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.83 -11.76 -45.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042249196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.932 kcal (2) G-P(sol) polarization free energy of solvation -33.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds