Wall clock time and date at job start Wed Apr 1 2020 02:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47060 * 2 1 4 4 C 1.38241 * 119.99921 * 90.00449 * 3 2 1 5 5 C 1.38229 * 119.99902 * 179.97438 * 4 3 2 6 6 C 1.38238 * 120.00311 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00079 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47401 * 89.99905 * 7 6 5 9 9 O 1.21277 * 119.99513 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00016 * 179.97438 * 8 7 6 11 11 C 1.47153 * 121.22297 * 0.02562 * 10 8 7 12 12 C 1.52840 * 107.98323 * 122.70137 * 11 10 8 13 13 C 1.53098 * 110.57978 * 57.34016 * 12 11 10 14 14 H 1.08995 * 112.48582 * 71.39846 * 13 12 11 15 15 C 1.56032 * 106.38399 * 195.45251 * 13 12 11 16 16 C 1.54499 * 102.61483 * 78.39067 * 15 13 12 17 17 N 1.47434 * 107.14938 * 22.84457 * 16 15 13 18 18 C 1.36932 * 126.06060 * 181.64567 * 17 16 15 19 19 H 1.08000 * 120.00102 * 174.16853 * 18 17 16 20 20 C 1.38813 * 119.99781 * 354.17927 * 18 17 16 21 21 N 1.31618 * 120.00322 * 6.70833 * 20 18 17 22 22 Si 1.86803 * 119.99667 * 186.70713 * 20 18 17 23 23 H 1.48505 * 109.46902 * 94.98454 * 22 20 18 24 24 H 1.48502 * 109.47113 * 214.98351 * 22 20 18 25 25 H 1.48493 * 109.47094 * 334.98304 * 22 20 18 26 26 C 1.46474 * 107.88055 * 1.61330 * 17 16 15 27 27 H 1.09008 * 108.42158 * 89.91117 * 26 17 16 28 28 C 1.46763 * 121.22312 * 179.71883 * 10 8 7 29 29 C 1.38233 * 119.99895 * 0.25745 * 6 5 4 30 30 C 1.38235 * 120.00093 * 270.02519 * 3 2 1 31 31 H 1.08997 * 109.46947 * 299.99797 * 1 2 3 32 32 H 1.08996 * 109.47524 * 59.99637 * 1 2 3 33 33 H 1.09005 * 109.47258 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.46673 * 240.00688 * 2 1 3 35 35 H 1.08996 * 109.47076 * 120.00655 * 2 1 3 36 36 H 1.08002 * 119.99722 * 359.97438 * 4 3 2 37 37 H 1.08000 * 119.99772 * 179.97438 * 5 4 3 38 38 H 1.08997 * 109.47023 * 329.99538 * 7 6 5 39 39 H 1.09005 * 109.46905 * 210.00255 * 7 6 5 40 40 H 1.09002 * 109.76193 * 242.32503 * 11 10 8 41 41 H 1.09000 * 109.76005 * 3.02862 * 11 10 8 42 42 H 1.08994 * 109.25946 * 177.62985 * 12 11 10 43 43 H 1.09002 * 109.24917 * 297.10114 * 12 11 10 44 44 H 1.09002 * 110.77269 * 196.66607 * 15 13 12 45 45 H 1.08999 * 110.78472 * 319.91045 * 15 13 12 46 46 H 1.08997 * 109.90493 * 142.22484 * 16 15 13 47 47 H 1.08998 * 109.90129 * 263.28684 * 16 15 13 48 48 H 0.96993 * 119.99751 * 180.02562 * 21 20 18 49 49 H 1.09002 * 109.22569 * 352.86457 * 28 10 8 50 50 H 1.08996 * 109.22846 * 112.22288 * 28 10 8 51 51 H 1.07994 * 120.00182 * 179.73105 * 29 6 5 52 52 H 1.07998 * 120.00262 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7240 3.3755 1.1972 6 6 2.9544 4.0272 0.0001 7 6 3.4567 5.4481 0.0001 8 6 4.9637 5.4481 0.0001 9 8 5.5700 4.3978 0.0004 10 7 5.6374 6.6153 -0.0004 11 6 4.9290 7.9051 -0.0003 12 6 5.3907 8.6970 1.2226 13 6 6.9103 8.8819 1.2017 14 1 7.2344 9.5830 0.4327 15 6 7.3192 9.3281 2.6399 16 6 7.2945 7.9980 3.4256 17 7 7.4605 6.9103 2.4443 18 6 7.4628 5.5691 2.7203 19 1 7.4980 4.8518 1.9137 20 6 7.4195 5.1314 4.0370 21 7 7.2435 5.9969 5.0128 22 14 7.6112 3.3139 4.4238 23 1 9.0315 3.0236 4.7459 24 1 6.7580 2.9628 5.5874 25 1 7.1966 2.5107 3.2457 26 6 7.6218 7.5186 1.1216 27 1 8.6840 7.6939 0.9503 28 6 7.1047 6.6467 0.0056 29 6 2.7183 3.3776 -1.1971 30 6 2.2622 2.0726 -1.1971 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 2.0824 1.5633 2.1325 37 1 2.9037 3.8847 2.1325 38 1 3.0933 5.9618 0.8901 39 1 3.0932 5.9619 -0.8898 40 1 5.1687 8.4573 -0.9090 41 1 3.8537 7.7349 0.0544 42 1 4.9095 9.6749 1.2204 43 1 5.1071 8.1590 2.1272 44 1 8.3203 9.7593 2.6409 45 1 6.5952 10.0343 3.0463 46 1 8.1131 7.9768 4.1450 47 1 6.3419 7.8912 3.9444 48 1 7.2137 5.6911 5.9328 49 1 7.4849 5.6338 0.1380 50 1 7.4593 7.0408 -0.9467 51 1 2.8941 3.8882 -2.1323 52 1 2.0814 1.5638 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042249196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:15 Heat of formation + Delta-G solvation = -9.525725 kcal Electronic energy + Delta-G solvation = -31220.691577 eV Core-core repulsion = 27377.313693 eV Total energy + Delta-G solvation = -3843.377884 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.47220 -40.43887 -39.35182 -36.48841 -35.54218 -34.65150 -32.98062 -32.26011 -31.82292 -30.68549 -30.04356 -28.13815 -26.49371 -25.39867 -24.00613 -23.81238 -23.66016 -21.77593 -21.70966 -20.85963 -19.61186 -18.45174 -18.06339 -17.31423 -16.91429 -16.81735 -16.42838 -16.16409 -15.90734 -15.82997 -15.55220 -15.13031 -14.67419 -14.62430 -14.45815 -14.27306 -14.16383 -14.04846 -13.73902 -13.72816 -13.25252 -13.15026 -13.05494 -12.89531 -12.83487 -12.64892 -12.60358 -12.46255 -12.30680 -12.08270 -12.07090 -11.71034 -11.67383 -11.63713 -11.38146 -11.25969 -11.11610 -10.68018 -10.67196 -9.81025 -9.44017 -9.40479 -8.80090 -7.86953 -5.15031 0.39365 0.51265 1.32334 1.33383 1.45133 1.79934 2.23539 2.45462 2.86423 3.32104 3.53619 3.69168 3.85253 3.87522 3.91560 3.94698 4.00095 4.12256 4.14462 4.19556 4.34589 4.44623 4.47218 4.51347 4.52535 4.56508 4.58422 4.64421 4.69826 4.72569 4.74813 4.76393 4.89931 4.93399 5.03596 5.05242 5.06630 5.15946 5.16934 5.18351 5.20974 5.34611 5.37375 5.50474 5.54994 5.67214 5.69038 5.71389 5.73371 5.76597 5.81279 6.13148 6.22581 6.64782 7.14370 7.39787 7.82766 8.46036 9.24266 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011301 B = 0.003892 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.081641 B = 7193.337297 C = 8883.934627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 C -0.092 4.092 4 C -0.133 4.133 5 C -0.126 4.126 6 C -0.080 4.080 7 C -0.089 4.089 8 C 0.511 3.489 9 O -0.586 6.586 10 N -0.599 5.599 11 C 0.107 3.893 12 C -0.121 4.121 13 C -0.084 4.084 14 H 0.123 0.877 15 C -0.130 4.130 16 C 0.186 3.814 17 N -0.604 5.604 18 C -0.202 4.202 19 H 0.065 0.935 20 C -0.060 4.060 21 N -0.946 5.946 22 Si 0.948 3.052 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.289 1.289 26 C 0.141 3.859 27 H 0.023 0.977 28 C 0.118 3.882 29 C -0.109 4.109 30 C -0.123 4.123 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.138 0.862 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.032 0.968 44 H 0.065 0.935 45 H 0.083 0.917 46 H -0.001 1.001 47 H 0.004 0.996 48 H 0.242 0.758 49 H 0.046 0.954 50 H 0.091 0.909 51 H 0.140 0.860 52 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.762 3.124 -15.832 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.151 4.151 5 C -0.144 4.144 6 C -0.081 4.081 7 C -0.129 4.129 8 C 0.300 3.700 9 O -0.466 6.466 10 N -0.331 5.331 11 C -0.015 4.015 12 C -0.159 4.159 13 C -0.103 4.103 14 H 0.141 0.859 15 C -0.168 4.168 16 C 0.061 3.939 17 N -0.329 5.329 18 C -0.332 4.332 19 H 0.083 0.917 20 C -0.253 4.253 21 N -0.597 5.597 22 Si 0.779 3.221 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.215 1.215 26 C 0.034 3.966 27 H 0.041 0.959 28 C -0.006 4.006 29 C -0.127 4.127 30 C -0.141 4.141 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.141 0.859 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.156 0.844 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.051 0.949 44 H 0.084 0.916 45 H 0.101 0.899 46 H 0.017 0.983 47 H 0.022 0.978 48 H 0.052 0.948 49 H 0.065 0.935 50 H 0.109 0.891 51 H 0.158 0.842 52 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.454 2.434 -15.658 20.787 hybrid contribution 0.768 -1.319 1.509 2.147 sum -12.686 1.115 -14.149 19.036 Atomic orbital electron populations 1.21707 0.93530 1.02497 1.02027 1.20586 0.97097 0.91150 1.03295 1.20182 0.98875 0.97288 0.92821 1.21148 1.00798 0.94585 0.98617 1.21121 0.99613 0.95940 0.97709 1.19494 0.99128 0.95779 0.93682 1.20690 0.90256 0.95338 1.06595 1.20993 0.90806 0.82991 0.75198 1.90678 1.71339 1.32935 1.51631 1.48014 1.06401 1.06595 1.72105 1.22025 0.97577 0.82550 0.99301 1.21825 0.95162 1.01098 0.97845 1.22417 0.95573 0.95114 0.97178 0.85882 1.23032 1.01405 0.96317 0.96088 1.20963 0.96762 0.85772 0.90420 1.44467 1.84451 1.01205 1.02779 1.19086 1.40202 0.82637 0.91227 0.91714 1.25249 1.03985 1.00070 0.95953 1.70142 1.58501 1.32692 0.98370 0.85478 0.77446 0.82366 0.76798 1.21244 1.21844 1.21497 1.20917 0.96733 0.93174 0.85731 0.95939 1.21101 0.80675 1.00488 0.98336 1.21211 0.98677 0.95408 0.97422 1.21270 0.99929 0.94666 0.98250 0.93268 0.92210 0.90933 0.89916 0.91323 0.85885 0.87968 0.87769 0.84416 0.87752 0.87951 0.87874 0.94895 0.91588 0.89888 0.98316 0.97773 0.94830 0.93491 0.89142 0.84245 0.83699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.89 71.98 0.71 -1.50 16 2 C -0.08 -1.63 6.06 29.85 0.18 -1.45 16 3 C -0.09 -2.38 5.13 -19.87 -0.10 -2.48 16 4 C -0.13 -4.06 9.70 22.27 0.22 -3.85 16 5 C -0.13 -4.28 9.70 22.27 0.22 -4.06 16 6 C -0.08 -2.47 4.37 -19.87 -0.09 -2.56 16 7 C -0.09 -2.44 4.20 29.10 0.12 -2.32 16 8 C 0.51 18.93 7.71 87.66 0.68 19.60 16 9 O -0.59 -28.23 15.49 -3.02 -0.05 -28.28 16 10 N -0.60 -19.53 2.98 -824.03 -2.45 -21.98 16 11 C 0.11 2.31 6.36 86.20 0.55 2.86 16 12 C -0.12 -3.12 5.04 30.57 0.15 -2.96 16 13 C -0.08 -2.38 3.68 -9.37 -0.03 -2.41 16 14 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 15 C -0.13 -4.38 6.32 32.16 0.20 -4.17 16 16 C 0.19 9.10 4.61 86.71 0.40 9.50 16 17 N -0.60 -30.82 3.19 -675.00 -2.16 -32.98 16 18 C -0.20 -11.96 9.70 84.03 0.82 -11.14 16 19 H 0.07 4.05 6.45 -2.91 -0.02 4.03 16 20 C -0.06 -3.66 5.48 84.86 0.47 -3.19 16 21 N -0.95 -59.44 10.43 21.65 0.23 -59.22 16 22 Si 0.95 51.20 29.56 68.60 2.03 53.23 16 23 H -0.29 -14.98 7.11 99.48 0.71 -14.28 16 24 H -0.29 -15.53 7.11 99.48 0.71 -14.82 16 25 H -0.29 -16.00 7.11 99.48 0.71 -15.30 16 26 C 0.14 5.48 2.96 44.60 0.13 5.61 16 27 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 28 C 0.12 4.31 5.64 85.60 0.48 4.79 16 29 C -0.11 -2.89 9.70 22.27 0.22 -2.67 16 30 C -0.12 -3.02 9.70 22.27 0.22 -2.81 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.08 1.39 8.09 -2.38 -0.02 1.37 16 35 H 0.07 1.35 8.09 -2.39 -0.02 1.33 16 36 H 0.12 3.43 8.06 -2.91 -0.02 3.40 16 37 H 0.10 3.72 8.06 -2.91 -0.02 3.69 16 38 H 0.10 2.73 7.73 -2.39 -0.02 2.71 16 39 H 0.14 2.48 7.85 -2.38 -0.02 2.46 16 40 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.10 1.73 6.02 -2.39 -0.01 1.72 16 42 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.03 1.18 6.85 -2.39 -0.02 1.16 16 44 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.08 2.41 7.98 -2.39 -0.02 2.39 16 46 H 0.00 -0.08 7.45 -2.39 -0.02 -0.10 16 47 H 0.00 0.22 7.20 -2.39 -0.02 0.21 16 48 H 0.24 14.94 8.31 -92.71 -0.77 14.17 16 49 H 0.05 2.18 5.48 -2.39 -0.01 2.16 16 50 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 51 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 52 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -82.67 401.95 4.02 -78.65 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.89 Total: 15.80 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 5.53 Total: -5.23 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -4.38 Total: -114.17 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.05 Total: -28.28 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 2.03 Total: 53.23 kcal Total: -82.67 4.02 -78.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042249196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.120 kcal (2) G-P(sol) polarization free energy of solvation -82.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds