Wall clock time and date at job start Wed Apr 1 2020 02:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.46816 * 2 1 4 4 C 1.38238 * 119.99784 * 90.00354 * 3 2 1 5 5 C 1.38235 * 120.00123 * 179.97438 * 4 3 2 6 6 C 1.38243 * 119.99602 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.99586 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47001 * 89.99822 * 7 6 5 9 9 O 1.21281 * 119.99990 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00069 * 179.97438 * 8 7 6 11 11 C 1.46602 * 119.75537 * 359.72832 * 10 8 7 12 12 C 1.54299 * 110.48169 * 132.16904 * 11 10 8 13 13 C 1.51975 * 107.21017 * 52.08214 * 12 11 10 14 14 H 1.08999 * 111.57411 * 56.71835 * 13 12 11 15 15 C 1.53312 * 114.31584 * 184.55360 * 13 12 11 16 16 C 1.55298 * 101.30402 * 154.30183 * 15 13 12 17 17 N 1.48157 * 107.04495 * 336.97115 * 16 15 13 18 18 C 1.36934 * 126.39927 * 174.97950 * 17 16 15 19 19 H 1.08001 * 120.00048 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.00312 * 0.02894 * 18 17 16 21 21 N 1.31621 * 119.99772 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00330 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.47131 * 89.99481 * 22 20 18 24 24 H 1.48498 * 109.47565 * 209.99246 * 22 20 18 25 25 H 1.48495 * 109.47192 * 329.99390 * 22 20 18 26 26 C 1.45505 * 107.20236 * 354.99547 * 17 16 15 27 27 H 1.08993 * 109.57305 * 274.15969 * 26 17 16 28 28 C 1.47792 * 119.75980 * 180.02562 * 10 8 7 29 29 C 1.38233 * 120.00248 * 0.27275 * 6 5 4 30 30 C 1.38233 * 120.00204 * 270.01958 * 3 2 1 31 31 H 1.09003 * 109.47286 * 299.99658 * 1 2 3 32 32 H 1.08993 * 109.47429 * 59.99952 * 1 2 3 33 33 H 1.09002 * 109.47541 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47286 * 240.00342 * 2 1 3 35 35 H 1.09005 * 109.47032 * 120.00215 * 2 1 3 36 36 H 1.08000 * 120.00524 * 359.97438 * 4 3 2 37 37 H 1.07999 * 120.00181 * 179.97438 * 5 4 3 38 38 H 1.09000 * 109.46646 * 209.99280 * 7 6 5 39 39 H 1.09000 * 109.47248 * 329.99998 * 7 6 5 40 40 H 1.08998 * 109.22864 * 252.57433 * 11 10 8 41 41 H 1.09002 * 109.22792 * 11.93794 * 11 10 8 42 42 H 1.09001 * 110.05790 * 292.59023 * 12 11 10 43 43 H 1.09007 * 109.87458 * 171.47184 * 12 11 10 44 44 H 1.08994 * 111.70938 * 36.12291 * 15 13 12 45 45 H 1.08997 * 110.72639 * 272.05166 * 15 13 12 46 46 H 1.09005 * 109.91929 * 217.62009 * 16 15 13 47 47 H 1.08999 * 110.08949 * 96.41224 * 16 15 13 48 48 H 0.96998 * 120.00408 * 180.02562 * 21 20 18 49 49 H 1.09005 * 110.06445 * 350.47484 * 28 10 8 50 50 H 1.09001 * 110.06649 * 111.92976 * 28 10 8 51 51 H 1.08004 * 119.99934 * 179.72684 * 29 6 5 52 52 H 1.07999 * 119.99956 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2626 2.0724 1.1972 5 6 2.7238 3.3755 1.1973 6 6 2.9552 4.0269 0.0001 7 6 3.4574 5.4478 0.0002 8 6 4.9645 5.4478 0.0014 9 8 5.5709 4.3975 0.0026 10 7 5.6383 6.6150 0.0012 11 6 4.8999 7.8815 -0.0063 12 6 5.4609 8.8399 1.0649 13 6 6.9623 8.9288 0.8468 14 1 7.2016 9.2552 -0.1653 15 6 7.7049 9.7604 1.8990 16 6 9.1251 9.1355 1.8341 17 7 8.9734 7.7686 1.2831 18 6 9.9860 6.9021 0.9687 19 1 9.7564 5.9248 0.5705 20 6 11.3077 7.2797 1.1620 21 7 11.5876 8.4709 1.6469 22 14 12.6892 6.0980 0.7326 23 1 13.0965 6.3052 -0.6805 24 1 13.8501 6.3485 1.6240 25 1 12.2193 4.7009 0.9126 26 6 7.5472 7.5190 1.1379 27 1 7.1445 7.1445 2.0789 28 6 7.1162 6.6088 0.0018 29 6 2.7199 3.3770 -1.1971 30 6 2.2622 2.0726 -1.1971 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.0823 1.5635 2.1325 37 1 2.9035 3.8848 2.1326 38 1 3.0948 5.9613 -0.8903 39 1 3.0934 5.9618 0.8897 40 1 4.9901 8.3438 -0.9892 41 1 3.8481 7.6850 0.2020 42 1 5.2533 8.4497 2.0612 43 1 5.0107 9.8262 0.9520 44 1 7.2698 9.6374 2.8908 45 1 7.7283 10.8120 1.6134 46 1 9.5557 9.0870 2.8344 47 1 9.7661 9.7294 1.1826 48 1 12.5112 8.7350 1.7817 49 1 7.4859 5.5976 0.1719 50 1 7.4922 6.9892 -0.9479 51 1 2.8964 3.8875 -2.1324 52 1 2.0815 1.5638 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042249197.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:20 Heat of formation + Delta-G solvation = 8.533359 kcal Electronic energy + Delta-G solvation = -29970.333366 eV Core-core repulsion = 26127.738582 eV Total energy + Delta-G solvation = -3842.594783 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.37317 -39.42511 -38.12741 -35.35714 -34.77159 -32.88701 -31.70037 -31.12105 -30.98409 -29.45360 -28.51523 -27.11562 -24.68715 -24.00942 -23.01946 -22.81614 -22.21873 -20.81968 -20.09457 -19.68674 -18.81055 -17.06010 -16.61012 -16.25876 -15.96900 -15.54071 -15.11767 -15.00774 -14.68463 -14.33687 -14.06364 -13.93166 -13.86461 -13.62536 -13.47624 -13.30392 -13.07177 -12.84182 -12.71337 -12.28533 -12.17917 -12.09216 -11.84995 -11.81954 -11.48577 -11.37591 -11.30242 -10.99137 -10.94298 -10.91417 -10.79435 -10.73516 -10.15210 -9.97088 -9.83414 -9.68468 -9.59936 -9.44369 -8.94682 -8.61530 -8.56722 -8.38078 -6.84109 -5.70372 -3.03999 1.24368 1.37930 2.81980 3.15387 3.42752 3.48446 3.50879 3.71993 4.49762 4.52841 4.63266 4.66764 4.73798 4.85471 4.90310 4.93782 5.00305 5.10717 5.15747 5.19816 5.29480 5.30704 5.40973 5.43003 5.49662 5.51254 5.63019 5.63640 5.68156 5.72290 5.77904 5.87175 5.92474 5.99420 6.01688 6.03960 6.08860 6.14430 6.17976 6.34253 6.40083 6.50169 6.53120 6.54344 6.57392 6.73712 6.77353 6.95091 7.07359 7.56230 7.59533 7.64465 7.82709 8.24646 8.39637 9.20737 9.83670 10.50226 11.41930 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014366 B = 0.002510 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.644119 B =11154.418107 C =12561.918075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.117 4.117 5 C -0.101 4.101 6 C -0.066 4.066 7 C -0.102 4.102 8 C 0.511 3.489 9 O -0.532 6.532 10 N -0.608 5.608 11 C 0.107 3.893 12 C -0.120 4.120 13 C -0.112 4.112 14 H 0.078 0.922 15 C -0.139 4.139 16 C 0.176 3.824 17 N -0.593 5.593 18 C -0.227 4.227 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.922 5.922 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.156 3.844 27 H 0.024 0.976 28 C 0.117 3.883 29 C -0.102 4.102 30 C -0.118 4.118 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.037 0.963 47 H 0.056 0.944 48 H 0.252 0.748 49 H 0.091 0.909 50 H 0.069 0.931 51 H 0.119 0.881 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.249 -5.392 -3.579 25.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.119 4.119 6 C -0.066 4.066 7 C -0.142 4.142 8 C 0.298 3.702 9 O -0.409 6.409 10 N -0.343 5.343 11 C -0.016 4.016 12 C -0.159 4.159 13 C -0.132 4.132 14 H 0.096 0.904 15 C -0.177 4.177 16 C 0.052 3.948 17 N -0.318 5.318 18 C -0.355 4.355 19 H 0.097 0.903 20 C -0.203 4.203 21 N -0.569 5.569 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.047 3.953 27 H 0.041 0.959 28 C -0.005 4.005 29 C -0.120 4.120 30 C -0.136 4.136 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.055 0.945 47 H 0.074 0.926 48 H 0.062 0.938 49 H 0.109 0.891 50 H 0.087 0.913 51 H 0.137 0.863 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.642 -5.964 -3.561 24.642 hybrid contribution 0.932 -0.364 -0.172 1.016 sum -22.710 -6.328 -3.733 23.869 Atomic orbital electron populations 1.21743 0.94841 1.01542 1.02159 1.20535 0.96029 0.92860 1.02829 1.19853 0.99437 0.96061 0.93273 1.20944 1.00341 0.94754 0.97446 1.20964 0.98638 0.94919 0.97414 1.19294 0.98911 0.94848 0.93581 1.20734 0.93193 0.95389 1.04835 1.20477 0.89426 0.83670 0.76653 1.90728 1.70036 1.30896 1.49207 1.48310 1.07511 1.05419 1.73031 1.21824 0.95360 0.84739 0.99656 1.21893 0.96647 0.98614 0.98738 1.22221 0.92905 0.98304 0.99758 0.90358 1.22655 0.99166 0.98398 0.97479 1.21552 0.90205 0.84650 0.98388 1.44192 0.98699 1.14032 1.74858 1.19048 0.84868 0.95393 1.36219 0.90306 1.24781 0.97146 0.97076 1.01318 1.69942 1.17703 1.18829 1.50474 0.86145 0.81923 0.80226 0.77706 1.21592 1.21698 1.20582 1.21010 0.86987 0.92458 0.94803 0.95855 1.21700 0.76587 1.02575 0.99608 1.20939 0.98873 0.94910 0.97326 1.20929 1.00472 0.94739 0.97414 0.92583 0.92612 0.92536 0.91124 0.91097 0.86274 0.86247 0.88210 0.88090 0.91670 0.90358 0.91407 0.90924 0.92465 0.92281 0.94527 0.92580 0.93789 0.89105 0.91295 0.86327 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.09 -0.69 6.06 -27.89 -0.17 -0.85 16 3 C -0.09 -0.91 5.13 -104.63 -0.54 -1.44 16 4 C -0.12 -1.28 9.70 -39.58 -0.38 -1.67 16 5 C -0.10 -1.20 9.70 -39.58 -0.38 -1.59 16 6 C -0.07 -0.80 4.37 -104.62 -0.46 -1.25 16 7 C -0.10 -1.09 4.16 -29.03 -0.12 -1.22 16 8 C 0.51 7.91 7.67 -10.99 -0.08 7.82 16 9 O -0.53 -10.67 15.40 5.56 0.09 -10.59 16 10 N -0.61 -9.23 3.00 -172.46 -0.52 -9.75 16 11 C 0.11 1.20 6.25 -3.31 -0.02 1.18 16 12 C -0.12 -1.48 5.70 -26.57 -0.15 -1.63 16 13 C -0.11 -1.87 2.59 -89.72 -0.23 -2.10 16 14 H 0.08 1.36 8.13 -51.93 -0.42 0.93 16 15 C -0.14 -2.49 6.51 -25.35 -0.17 -2.66 16 16 C 0.18 4.23 5.44 -1.91 -0.01 4.22 16 17 N -0.59 -15.01 3.34 -162.88 -0.54 -15.56 16 18 C -0.23 -6.36 9.88 -15.06 -0.15 -6.51 16 19 H 0.08 2.18 7.44 -52.49 -0.39 1.79 16 20 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 21 N -0.92 -27.15 10.43 55.49 0.58 -26.57 16 22 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 26 C 0.16 3.22 2.78 -67.80 -0.19 3.03 16 27 H 0.02 0.53 7.94 -51.93 -0.41 0.11 16 28 C 0.12 2.25 5.68 -3.93 -0.02 2.23 16 29 C -0.10 -1.18 9.70 -39.58 -0.38 -1.57 16 30 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 38 H 0.10 0.83 7.92 -51.93 -0.41 0.42 16 39 H 0.10 0.87 7.51 -51.93 -0.39 0.48 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.63 5.84 -51.93 -0.30 0.33 16 42 H 0.07 0.86 7.99 -51.93 -0.41 0.44 16 43 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 44 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.04 0.97 7.77 -51.93 -0.40 0.57 16 47 H 0.06 1.48 7.19 -51.93 -0.37 1.11 16 48 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 49 H 0.09 2.00 6.79 -51.93 -0.35 1.64 16 50 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 51 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 52 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 405.84 15.07 6.12 6.12 Total: -1.00 -33.42 405.84 -11.80 -45.22 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -8.92 Total: 0.14 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -3.57 Total: -6.57 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.48 Total: -51.87 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.42 -11.80 -45.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042249197.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.757 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds