Wall clock time and date at job start Wed Apr 1 2020 02:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46866 * 2 1 4 4 C 1.38241 * 120.00128 * 90.00102 * 3 2 1 5 5 C 1.38237 * 120.00074 * 180.02562 * 4 3 2 6 6 C 1.38237 * 119.99892 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.99703 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46574 * 90.00506 * 7 6 5 9 9 O 1.21275 * 120.00058 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99713 * 179.97438 * 8 7 6 11 11 C 1.46593 * 119.75282 * 0.02562 * 10 8 7 12 12 C 1.53944 * 111.39308 * 226.96621 * 11 10 8 13 13 C 1.51980 * 107.49311 * 309.66144 * 12 11 10 14 14 H 1.08994 * 111.02115 * 301.44317 * 13 12 11 15 15 C 1.53703 * 115.00129 * 174.21706 * 13 12 11 16 16 C 1.55298 * 101.81699 * 205.77887 * 15 13 12 17 17 N 1.48153 * 107.04071 * 22.44533 * 16 15 13 18 18 C 1.36937 * 126.39375 * 184.99806 * 17 16 15 19 19 H 1.08005 * 119.99945 * 184.60904 * 18 17 16 20 20 C 1.38806 * 120.00296 * 4.61810 * 18 17 16 21 21 N 1.31615 * 120.00270 * 6.81733 * 20 18 17 22 22 Si 1.86801 * 119.99916 * 186.81949 * 20 18 17 23 23 H 1.48499 * 109.47191 * 265.01238 * 22 20 18 24 24 H 1.48493 * 109.47383 * 25.01330 * 22 20 18 25 25 H 1.48502 * 109.47109 * 145.01523 * 22 20 18 26 26 C 1.45505 * 107.20452 * 5.26808 * 17 16 15 27 27 H 1.08999 * 109.56599 * 86.35826 * 26 17 16 28 28 C 1.47797 * 119.75590 * 180.02562 * 10 8 7 29 29 C 1.38228 * 119.99967 * 0.26059 * 6 5 4 30 30 C 1.38233 * 120.00222 * 270.01900 * 3 2 1 31 31 H 1.09001 * 109.46826 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47309 * 300.00545 * 1 2 3 33 33 H 1.09002 * 109.46638 * 60.00387 * 1 2 3 34 34 H 1.08993 * 109.47675 * 239.99855 * 2 1 3 35 35 H 1.09002 * 109.46638 * 119.99612 * 2 1 3 36 36 H 1.08003 * 119.99468 * 359.97438 * 4 3 2 37 37 H 1.07998 * 119.99695 * 179.97438 * 5 4 3 38 38 H 1.08994 * 109.47052 * 330.00827 * 7 6 5 39 39 H 1.08998 * 109.47206 * 210.00213 * 7 6 5 40 40 H 1.08997 * 109.23494 * 348.06474 * 11 10 8 41 41 H 1.08999 * 109.22918 * 107.47420 * 11 10 8 42 42 H 1.09002 * 110.79653 * 189.57803 * 12 11 10 43 43 H 1.08997 * 108.78828 * 68.60900 * 12 11 10 44 44 H 1.09008 * 110.95327 * 87.65164 * 15 13 12 45 45 H 1.08993 * 110.96344 * 323.91338 * 15 13 12 46 46 H 1.08998 * 109.91644 * 263.10007 * 16 15 13 47 47 H 1.08997 * 109.91910 * 141.80207 * 16 15 13 48 48 H 0.96996 * 120.00399 * 180.02562 * 21 20 18 49 49 H 1.09003 * 110.06105 * 9.52481 * 28 10 8 50 50 H 1.08993 * 110.06140 * 247.96184 * 28 10 8 51 51 H 1.08001 * 119.99946 * 179.71814 * 29 6 5 52 52 H 1.08004 * 119.99884 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7229 3.3760 1.1972 6 6 2.9533 4.0277 0.0000 7 6 3.4544 5.4489 0.0000 8 6 4.9615 5.4500 0.0005 9 8 5.5686 4.4002 0.0013 10 7 5.6345 6.6178 0.0001 11 6 4.8951 7.8835 -0.0002 12 6 5.4564 8.8615 -1.0483 13 6 6.9606 8.9356 -0.8445 14 1 7.2025 9.2671 0.1652 15 6 7.7185 9.7627 -1.8952 16 6 9.1324 9.1223 -1.8446 17 7 8.9715 7.7578 -1.2904 18 6 9.9779 6.8805 -0.9862 19 1 9.7406 5.8801 -0.6553 20 6 11.3030 7.2767 -1.1030 21 7 11.5933 8.5313 -1.3753 22 14 12.6746 6.0294 -0.8739 23 1 13.1547 6.0740 0.5307 24 1 12.1628 4.6692 -1.1790 25 1 13.7967 6.3533 -1.7910 26 6 7.5440 7.5218 -1.1356 27 1 7.1336 7.1408 -2.0707 28 6 7.1124 6.6126 0.0000 29 6 2.7183 3.3777 -1.1971 30 6 2.2623 2.0727 -1.1971 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.0823 1.5635 2.1325 37 1 2.9025 3.8853 2.1325 38 1 3.0904 5.9625 0.8898 39 1 3.0910 5.9623 -0.8901 40 1 3.8445 7.6857 -0.2130 41 1 4.9809 8.3497 0.9813 42 1 5.0167 9.8516 -0.9284 43 1 5.2356 8.4747 -2.0431 44 1 7.7564 10.8143 -1.6103 45 1 7.2715 9.6434 -2.8820 46 1 9.7838 9.7110 -1.1988 47 1 9.5517 9.0681 -2.8493 48 1 12.5193 8.8081 -1.4573 49 1 7.4828 5.6015 -0.1691 50 1 7.4877 6.9958 0.9489 51 1 2.8939 3.8883 -2.1324 52 1 2.0824 1.5635 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042249198.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:24 Heat of formation + Delta-G solvation = 7.833590 kcal Electronic energy + Delta-G solvation = -29966.762485 eV Core-core repulsion = 26124.137357 eV Total energy + Delta-G solvation = -3842.625128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.36264 -39.41104 -38.09886 -35.35559 -34.77177 -32.88332 -31.70316 -31.14625 -30.98314 -29.45677 -28.53602 -27.11734 -24.69440 -24.00507 -23.01768 -22.81567 -22.23290 -20.82008 -20.09038 -19.68863 -18.78578 -17.05882 -16.61409 -16.26066 -15.96919 -15.53942 -15.10763 -15.00695 -14.66833 -14.34923 -14.08606 -13.93354 -13.87735 -13.63311 -13.47570 -13.30354 -13.06872 -12.85232 -12.71473 -12.29796 -12.18649 -12.09565 -11.85020 -11.82469 -11.49921 -11.37835 -11.27022 -10.99801 -10.94534 -10.92746 -10.74821 -10.72176 -10.15071 -9.94401 -9.85114 -9.68233 -9.59872 -9.47710 -8.94609 -8.64012 -8.56751 -8.37554 -6.83813 -5.69004 -3.05681 1.24422 1.37988 2.81849 3.15390 3.42354 3.48461 3.51515 3.72028 4.49758 4.52641 4.63312 4.66820 4.74269 4.85230 4.90518 4.93961 4.98358 5.10706 5.15654 5.19493 5.29539 5.30885 5.40774 5.43077 5.50632 5.51337 5.62150 5.63375 5.69770 5.72341 5.77228 5.87294 5.93886 5.99397 6.01741 6.03924 6.08712 6.14153 6.17810 6.34325 6.40726 6.50126 6.53173 6.54402 6.57452 6.73790 6.77098 6.95152 7.07173 7.47730 7.61766 7.67784 7.82354 8.25859 8.39684 9.19656 9.83331 10.49741 11.40525 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014296 B = 0.002516 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.108375 B =11125.751429 C =12557.356704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.066 4.066 7 C -0.102 4.102 8 C 0.511 3.489 9 O -0.532 6.532 10 N -0.608 5.608 11 C 0.108 3.892 12 C -0.120 4.120 13 C -0.112 4.112 14 H 0.077 0.923 15 C -0.137 4.137 16 C 0.169 3.831 17 N -0.591 5.591 18 C -0.227 4.227 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.280 1.280 25 H -0.290 1.290 26 C 0.157 3.843 27 H 0.023 0.977 28 C 0.117 3.883 29 C -0.101 4.101 30 C -0.117 4.117 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.070 0.930 47 H 0.027 0.973 48 H 0.252 0.748 49 H 0.091 0.909 50 H 0.069 0.931 51 H 0.119 0.881 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.203 -5.467 3.038 24.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.136 4.136 5 C -0.120 4.120 6 C -0.066 4.066 7 C -0.142 4.142 8 C 0.298 3.702 9 O -0.408 6.408 10 N -0.342 5.342 11 C -0.016 4.016 12 C -0.159 4.159 13 C -0.132 4.132 14 H 0.095 0.905 15 C -0.175 4.175 16 C 0.045 3.955 17 N -0.316 5.316 18 C -0.355 4.355 19 H 0.097 0.903 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.205 1.205 25 H -0.217 1.217 26 C 0.048 3.952 27 H 0.040 0.960 28 C -0.005 4.005 29 C -0.120 4.120 30 C -0.135 4.135 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.088 0.912 47 H 0.045 0.955 48 H 0.062 0.938 49 H 0.109 0.891 50 H 0.087 0.913 51 H 0.137 0.863 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.599 -6.037 3.037 24.548 hybrid contribution 0.916 -0.393 0.053 0.998 sum -22.683 -6.430 3.090 23.778 Atomic orbital electron populations 1.21744 0.94841 1.01540 1.02159 1.20535 0.96029 0.92860 1.02828 1.19855 0.99434 0.96063 0.93274 1.20933 1.00452 0.94756 0.97415 1.20940 0.98837 0.94909 0.97337 1.19290 0.98915 0.94844 0.93583 1.20733 0.93192 0.95388 1.04842 1.20470 0.89427 0.83640 0.76652 1.90727 1.69993 1.30917 1.49200 1.48294 1.07522 1.05368 1.73008 1.21689 0.95270 0.84744 0.99862 1.21804 0.96604 0.98475 0.98996 1.22298 0.92797 0.98273 0.99840 0.90483 1.22704 0.98910 0.98432 0.97455 1.21656 0.90774 0.85088 0.97973 1.44181 0.98763 1.14317 1.74307 1.19043 0.84876 0.92885 1.38716 0.90328 1.24780 0.97119 0.96387 1.02028 1.69925 1.17366 1.14341 1.55099 0.86139 0.81933 0.80561 0.77448 1.21624 1.20530 1.21662 1.21034 0.86998 0.92410 0.94772 0.95952 1.21709 0.76552 1.02573 0.99703 1.20961 0.98685 0.94907 0.97405 1.20943 1.00369 0.94725 0.97445 0.92535 0.92602 0.92591 0.91098 0.91125 0.86315 0.86321 0.88193 0.88096 0.90276 0.91888 0.90652 0.91667 0.92210 0.92691 0.91156 0.95497 0.93802 0.89093 0.91286 0.86253 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.09 -0.69 6.06 -27.88 -0.17 -0.86 16 3 C -0.09 -0.91 5.13 -104.62 -0.54 -1.44 16 4 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 5 C -0.10 -1.19 9.70 -39.58 -0.38 -1.57 16 6 C -0.07 -0.80 4.37 -104.63 -0.46 -1.26 16 7 C -0.10 -1.10 4.16 -29.03 -0.12 -1.22 16 8 C 0.51 7.94 7.67 -10.98 -0.08 7.85 16 9 O -0.53 -10.69 15.40 5.56 0.09 -10.60 16 10 N -0.61 -9.27 3.02 -172.73 -0.52 -9.80 16 11 C 0.11 1.21 6.21 -3.50 -0.02 1.19 16 12 C -0.12 -1.48 5.76 -26.76 -0.15 -1.63 16 13 C -0.11 -1.88 2.61 -89.34 -0.23 -2.12 16 14 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 15 C -0.14 -2.47 6.53 -25.15 -0.16 -2.63 16 16 C 0.17 4.06 5.56 -1.91 -0.01 4.05 16 17 N -0.59 -14.98 3.34 -162.74 -0.54 -15.53 16 18 C -0.23 -6.36 9.84 -15.06 -0.15 -6.50 16 19 H 0.08 2.18 7.48 -52.48 -0.39 1.78 16 20 C -0.01 -0.19 5.46 -17.43 -0.10 -0.29 16 21 N -0.92 -27.01 10.52 55.49 0.58 -26.43 16 22 Si 0.91 22.56 29.56 -169.99 -5.02 17.53 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 C 0.16 3.24 2.76 -67.67 -0.19 3.05 16 27 H 0.02 0.51 7.99 -51.93 -0.41 0.09 16 28 C 0.12 2.26 5.71 -3.97 -0.02 2.23 16 29 C -0.10 -1.20 9.70 -39.59 -0.38 -1.59 16 30 C -0.12 -1.28 9.70 -39.58 -0.38 -1.67 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 35 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 36 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 37 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.10 0.83 7.94 -51.93 -0.41 0.42 16 39 H 0.10 0.88 7.49 -51.93 -0.39 0.49 16 40 H 0.08 0.64 5.84 -51.93 -0.30 0.34 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.82 8.03 -51.93 -0.42 0.41 16 44 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 45 H 0.05 0.93 8.13 -51.93 -0.42 0.51 16 46 H 0.07 1.87 6.77 -51.93 -0.35 1.52 16 47 H 0.03 0.70 8.09 -51.93 -0.42 0.28 16 48 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 49 H 0.09 2.01 6.77 -51.93 -0.35 1.66 16 50 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 51 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 52 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 406.10 15.07 6.12 6.12 Total: -1.00 -33.35 406.10 -11.80 -45.15 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -8.92 Total: 0.21 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -3.57 Total: -6.66 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.48 Total: -51.75 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.35 -11.80 -45.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042249198.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.986 kcal (2) G-P(sol) polarization free energy of solvation -33.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds