Wall clock time and date at job start Wed Apr 1 2020 02:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46866 * 2 1 4 4 C 1.38241 * 120.00128 * 90.00102 * 3 2 1 5 5 C 1.38237 * 120.00074 * 180.02562 * 4 3 2 6 6 C 1.38237 * 119.99892 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.99703 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46574 * 90.00506 * 7 6 5 9 9 O 1.21275 * 120.00058 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99713 * 179.97438 * 8 7 6 11 11 C 1.46593 * 119.75282 * 0.02562 * 10 8 7 12 12 C 1.53944 * 111.39308 * 226.96621 * 11 10 8 13 13 C 1.51980 * 107.49311 * 309.66144 * 12 11 10 14 14 H 1.08994 * 111.02115 * 301.44317 * 13 12 11 15 15 C 1.53703 * 115.00129 * 174.21706 * 13 12 11 16 16 C 1.55298 * 101.81699 * 205.77887 * 15 13 12 17 17 N 1.48153 * 107.04071 * 22.44533 * 16 15 13 18 18 C 1.36937 * 126.39375 * 184.99806 * 17 16 15 19 19 H 1.08005 * 119.99945 * 184.60904 * 18 17 16 20 20 C 1.38806 * 120.00296 * 4.61810 * 18 17 16 21 21 N 1.31615 * 120.00270 * 6.81733 * 20 18 17 22 22 Si 1.86801 * 119.99916 * 186.81949 * 20 18 17 23 23 H 1.48499 * 109.47191 * 265.01238 * 22 20 18 24 24 H 1.48493 * 109.47383 * 25.01330 * 22 20 18 25 25 H 1.48502 * 109.47109 * 145.01523 * 22 20 18 26 26 C 1.45505 * 107.20452 * 5.26808 * 17 16 15 27 27 H 1.08999 * 109.56599 * 86.35826 * 26 17 16 28 28 C 1.47797 * 119.75590 * 180.02562 * 10 8 7 29 29 C 1.38228 * 119.99967 * 0.26059 * 6 5 4 30 30 C 1.38233 * 120.00222 * 270.01900 * 3 2 1 31 31 H 1.09001 * 109.46826 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47309 * 300.00545 * 1 2 3 33 33 H 1.09002 * 109.46638 * 60.00387 * 1 2 3 34 34 H 1.08993 * 109.47675 * 239.99855 * 2 1 3 35 35 H 1.09002 * 109.46638 * 119.99612 * 2 1 3 36 36 H 1.08003 * 119.99468 * 359.97438 * 4 3 2 37 37 H 1.07998 * 119.99695 * 179.97438 * 5 4 3 38 38 H 1.08994 * 109.47052 * 330.00827 * 7 6 5 39 39 H 1.08998 * 109.47206 * 210.00213 * 7 6 5 40 40 H 1.08997 * 109.23494 * 348.06474 * 11 10 8 41 41 H 1.08999 * 109.22918 * 107.47420 * 11 10 8 42 42 H 1.09002 * 110.79653 * 189.57803 * 12 11 10 43 43 H 1.08997 * 108.78828 * 68.60900 * 12 11 10 44 44 H 1.09008 * 110.95327 * 87.65164 * 15 13 12 45 45 H 1.08993 * 110.96344 * 323.91338 * 15 13 12 46 46 H 1.08998 * 109.91644 * 263.10007 * 16 15 13 47 47 H 1.08997 * 109.91910 * 141.80207 * 16 15 13 48 48 H 0.96996 * 120.00399 * 180.02562 * 21 20 18 49 49 H 1.09003 * 110.06105 * 9.52481 * 28 10 8 50 50 H 1.08993 * 110.06140 * 247.96184 * 28 10 8 51 51 H 1.08001 * 119.99946 * 179.71814 * 29 6 5 52 52 H 1.08004 * 119.99884 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7229 3.3760 1.1972 6 6 2.9533 4.0277 0.0000 7 6 3.4544 5.4489 0.0000 8 6 4.9615 5.4500 0.0005 9 8 5.5686 4.4002 0.0013 10 7 5.6345 6.6178 0.0001 11 6 4.8951 7.8835 -0.0002 12 6 5.4564 8.8615 -1.0483 13 6 6.9606 8.9356 -0.8445 14 1 7.2025 9.2671 0.1652 15 6 7.7185 9.7627 -1.8952 16 6 9.1324 9.1223 -1.8446 17 7 8.9715 7.7578 -1.2904 18 6 9.9779 6.8805 -0.9862 19 1 9.7406 5.8801 -0.6553 20 6 11.3030 7.2767 -1.1030 21 7 11.5933 8.5313 -1.3753 22 14 12.6746 6.0294 -0.8739 23 1 13.1547 6.0740 0.5307 24 1 12.1628 4.6692 -1.1790 25 1 13.7967 6.3533 -1.7910 26 6 7.5440 7.5218 -1.1356 27 1 7.1336 7.1408 -2.0707 28 6 7.1124 6.6126 0.0000 29 6 2.7183 3.3777 -1.1971 30 6 2.2623 2.0727 -1.1971 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.0823 1.5635 2.1325 37 1 2.9025 3.8853 2.1325 38 1 3.0904 5.9625 0.8898 39 1 3.0910 5.9623 -0.8901 40 1 3.8445 7.6857 -0.2130 41 1 4.9809 8.3497 0.9813 42 1 5.0167 9.8516 -0.9284 43 1 5.2356 8.4747 -2.0431 44 1 7.7564 10.8143 -1.6103 45 1 7.2715 9.6434 -2.8820 46 1 9.7838 9.7110 -1.1988 47 1 9.5517 9.0681 -2.8493 48 1 12.5193 8.8081 -1.4573 49 1 7.4828 5.6015 -0.1691 50 1 7.4877 6.9958 0.9489 51 1 2.8939 3.8883 -2.1324 52 1 2.0824 1.5635 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042249198.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:23 Heat of formation + Delta-G solvation = -10.231954 kcal Electronic energy + Delta-G solvation = -29967.545865 eV Core-core repulsion = 26124.137357 eV Total energy + Delta-G solvation = -3843.408508 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.55768 -40.41245 -39.45593 -36.82264 -35.53647 -34.66729 -32.95486 -32.42036 -31.78944 -30.83293 -30.16322 -28.04917 -26.54621 -25.29549 -23.93191 -23.62930 -23.51735 -21.81173 -21.69114 -21.13340 -19.96054 -18.70391 -18.02699 -17.28113 -16.95300 -16.77811 -16.53701 -16.13918 -15.93733 -15.75654 -15.63868 -15.16663 -14.83008 -14.57957 -14.55142 -14.34059 -14.22274 -13.94237 -13.83464 -13.71058 -13.54264 -13.15385 -13.08702 -12.91022 -12.88676 -12.74259 -12.57835 -12.45075 -12.11662 -12.05240 -11.95915 -11.80696 -11.68974 -11.64490 -11.51439 -11.32840 -11.02664 -10.85851 -10.77829 -9.77616 -9.64804 -9.39372 -8.92014 -7.86854 -5.24850 0.41114 0.54887 1.40782 1.41600 1.51601 1.65345 1.98267 2.46678 2.86856 3.28127 3.47614 3.68001 3.74214 3.88190 3.90091 3.95814 3.98287 4.03674 4.16206 4.20995 4.27589 4.32359 4.36680 4.47810 4.51042 4.57970 4.58935 4.60956 4.62961 4.74425 4.77329 4.78602 4.86286 4.92093 4.95738 5.06216 5.09074 5.13176 5.16234 5.18534 5.24522 5.26735 5.38535 5.39144 5.49774 5.53874 5.60501 5.63557 5.70026 5.75125 5.79957 6.15526 6.19321 6.47903 7.05391 7.21340 7.74397 8.41131 9.20860 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014296 B = 0.002516 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.108375 B =11125.751429 C =12557.356704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.130 4.130 5 C -0.116 4.116 6 C -0.085 4.085 7 C -0.089 4.089 8 C 0.505 3.495 9 O -0.589 6.589 10 N -0.606 5.606 11 C 0.100 3.900 12 C -0.111 4.111 13 C -0.096 4.096 14 H 0.072 0.928 15 C -0.121 4.121 16 C 0.170 3.830 17 N -0.613 5.613 18 C -0.237 4.237 19 H 0.071 0.929 20 C -0.061 4.061 21 N -0.944 5.944 22 Si 0.970 3.030 23 H -0.283 1.283 24 H -0.277 1.277 25 H -0.289 1.289 26 C 0.148 3.852 27 H 0.008 0.992 28 C 0.130 3.870 29 C -0.118 4.118 30 C -0.131 4.131 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.037 0.963 47 H -0.010 1.010 48 H 0.248 0.752 49 H 0.050 0.950 50 H 0.059 0.941 51 H 0.126 0.874 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.660 -4.795 3.626 28.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.093 4.093 4 C -0.147 4.147 5 C -0.134 4.134 6 C -0.085 4.085 7 C -0.128 4.128 8 C 0.295 3.705 9 O -0.469 6.469 10 N -0.339 5.339 11 C -0.021 4.021 12 C -0.149 4.149 13 C -0.116 4.116 14 H 0.091 0.909 15 C -0.159 4.159 16 C 0.046 3.954 17 N -0.338 5.338 18 C -0.366 4.366 19 H 0.088 0.912 20 C -0.255 4.255 21 N -0.593 5.593 22 Si 0.798 3.202 23 H -0.210 1.210 24 H -0.202 1.202 25 H -0.216 1.216 26 C 0.040 3.960 27 H 0.026 0.974 28 C 0.006 3.994 29 C -0.136 4.136 30 C -0.149 4.149 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.099 0.901 42 H 0.135 0.865 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.089 0.911 46 H 0.055 0.945 47 H 0.009 0.991 48 H 0.057 0.943 49 H 0.069 0.931 50 H 0.078 0.922 51 H 0.144 0.856 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -27.118 -5.339 3.630 27.876 hybrid contribution 1.987 -0.670 -0.147 2.102 sum -25.131 -6.009 3.483 26.073 Atomic orbital electron populations 1.21711 0.93702 1.02406 1.02038 1.20586 0.96960 0.91447 1.03259 1.20188 0.98833 0.97166 0.93095 1.21233 1.00324 0.94860 0.98326 1.21217 0.98902 0.95443 0.97834 1.19518 0.99456 0.95808 0.93755 1.20779 0.88738 0.95477 1.07795 1.21408 0.91431 0.82610 0.75015 1.90704 1.71522 1.33005 1.51670 1.48373 1.05555 1.07377 1.72608 1.22095 0.96850 0.82529 1.00644 1.21826 0.92569 1.01040 0.99492 1.22235 0.96035 0.94222 0.99061 0.90931 1.22583 0.94827 0.99480 0.98983 1.21503 0.94239 0.84742 0.94930 1.44448 1.00495 1.14516 1.74327 1.19255 0.86108 0.93251 1.38010 0.91164 1.25536 0.99175 0.98143 1.02600 1.70125 1.17282 1.15688 1.56228 0.85196 0.79112 0.78498 0.77389 1.21021 1.20237 1.21565 1.21185 0.84711 0.95696 0.94429 0.97423 1.21212 0.79933 0.99729 0.98544 1.21210 0.99052 0.95506 0.97869 1.21219 1.00441 0.94825 0.98376 0.91179 0.92646 0.92779 0.90774 0.90609 0.84722 0.85222 0.84809 0.85133 0.85751 0.90092 0.86548 0.91541 0.89560 0.91136 0.94452 0.99136 0.94295 0.93119 0.92224 0.85625 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.89 71.98 0.71 -0.95 16 2 C -0.09 -1.26 6.06 29.85 0.18 -1.08 16 3 C -0.09 -1.86 5.13 -19.86 -0.10 -1.96 16 4 C -0.13 -2.66 9.70 22.27 0.22 -2.44 16 5 C -0.12 -2.53 9.70 22.27 0.22 -2.32 16 6 C -0.08 -1.91 4.37 -19.87 -0.09 -2.00 16 7 C -0.09 -1.62 4.16 29.10 0.12 -1.50 16 8 C 0.51 15.05 7.67 87.66 0.67 15.72 16 9 O -0.59 -24.21 15.40 -3.01 -0.05 -24.26 16 10 N -0.61 -17.46 3.02 -818.78 -2.47 -19.94 16 11 C 0.10 1.77 6.21 86.68 0.54 2.31 16 12 C -0.11 -2.20 5.76 30.58 0.18 -2.03 16 13 C -0.10 -3.02 2.61 -9.96 -0.03 -3.04 16 14 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 15 C -0.12 -4.17 6.53 31.62 0.21 -3.96 16 16 C 0.17 8.46 5.56 86.85 0.48 8.95 16 17 N -0.61 -32.39 3.34 -668.77 -2.24 -34.62 16 18 C -0.24 -13.91 9.84 84.03 0.83 -13.09 16 19 H 0.07 4.12 7.48 -2.91 -0.02 4.10 16 20 C -0.06 -3.61 5.46 84.86 0.46 -3.14 16 21 N -0.94 -57.81 10.52 21.65 0.23 -57.59 16 22 Si 0.97 48.01 29.56 68.60 2.03 50.03 16 23 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 26 C 0.15 6.18 2.76 45.70 0.13 6.31 16 27 H 0.01 0.37 7.99 -2.39 -0.02 0.35 16 28 C 0.13 5.14 5.71 85.72 0.49 5.63 16 29 C -0.12 -2.69 9.70 22.27 0.22 -2.47 16 30 C -0.13 -2.77 9.70 22.27 0.22 -2.56 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 35 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 36 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 37 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.13 1.55 7.94 -2.39 -0.02 1.54 16 39 H 0.13 1.63 7.49 -2.39 -0.02 1.61 16 40 H 0.12 1.18 5.84 -2.39 -0.01 1.17 16 41 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.07 1.37 8.03 -2.39 -0.02 1.35 16 44 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 45 H 0.07 2.23 8.13 -2.39 -0.02 2.21 16 46 H 0.04 2.08 6.77 -2.39 -0.02 2.06 16 47 H -0.01 -0.53 8.09 -2.39 -0.02 -0.55 16 48 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 49 H 0.05 2.39 6.77 -2.39 -0.02 2.37 16 50 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 51 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 52 H 0.13 2.30 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -79.79 406.10 4.03 -75.76 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.88 Total: 14.22 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 5.65 Total: -3.61 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -4.48 Total: -112.14 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.05 Total: -24.26 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.03 kcal Total: -79.79 4.03 -75.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042249198.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.529 kcal (2) G-P(sol) polarization free energy of solvation -79.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds