Wall clock time and date at job start Wed Apr 1 2020 02:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47198 * 2 1 4 4 C 1.38230 * 120.00020 * 89.99618 * 3 2 1 5 5 C 1.38238 * 119.99682 * 179.97438 * 4 3 2 6 6 C 1.38243 * 120.00185 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00020 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47005 * 90.00246 * 7 6 5 9 9 O 1.21288 * 120.00331 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00233 * 179.97438 * 8 7 6 11 11 C 1.47149 * 121.21339 * 0.02562 * 10 8 7 12 12 C 1.52839 * 108.02111 * 237.23201 * 11 10 8 13 13 C 1.53103 * 110.57307 * 302.73470 * 12 11 10 14 14 H 1.08995 * 113.01894 * 288.91070 * 13 12 11 15 15 C 1.56029 * 106.39884 * 164.50694 * 13 12 11 16 16 C 1.54500 * 102.61367 * 281.58268 * 15 13 12 17 17 N 1.47440 * 107.14366 * 337.14483 * 16 15 13 18 18 C 1.36938 * 126.05437 * 178.40713 * 17 16 15 19 19 H 1.07998 * 119.99447 * 179.97438 * 18 17 16 20 20 C 1.38808 * 120.00501 * 359.97262 * 18 17 16 21 21 N 1.31626 * 119.99807 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00253 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46952 * 60.00166 * 22 20 18 24 24 H 1.48496 * 109.47025 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46928 * 300.00324 * 22 20 18 26 26 C 1.46462 * 107.88068 * 358.38611 * 17 16 15 27 27 H 1.09001 * 107.85616 * 270.36409 * 26 17 16 28 28 C 1.46763 * 121.21748 * 179.97438 * 10 8 7 29 29 C 1.38236 * 119.99500 * 0.27614 * 6 5 4 30 30 C 1.38231 * 120.00262 * 359.54020 * 29 6 5 31 31 H 1.09002 * 109.47097 * 60.00517 * 1 2 3 32 32 H 1.09007 * 109.46985 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47368 * 300.00312 * 1 2 3 34 34 H 1.08992 * 109.47474 * 239.99683 * 2 1 3 35 35 H 1.09002 * 109.47097 * 119.99483 * 2 1 3 36 36 H 1.07998 * 120.00632 * 0.02562 * 4 3 2 37 37 H 1.08002 * 119.99774 * 180.02562 * 5 4 3 38 38 H 1.08997 * 109.47192 * 330.00506 * 7 6 5 39 39 H 1.08996 * 109.46908 * 210.00498 * 7 6 5 40 40 H 1.09002 * 109.76041 * 356.87766 * 11 10 8 41 41 H 1.08997 * 109.76162 * 117.58357 * 11 10 8 42 42 H 1.08991 * 109.25511 * 62.96470 * 12 11 10 43 43 H 1.08997 * 109.25521 * 182.40302 * 12 11 10 44 44 H 1.09000 * 110.77945 * 39.86124 * 15 13 12 45 45 H 1.09005 * 110.78123 * 163.29570 * 15 13 12 46 46 H 1.08994 * 109.90716 * 96.52588 * 16 15 13 47 47 H 1.09001 * 109.90121 * 217.58700 * 16 15 13 48 48 H 0.96996 * 119.99635 * 180.02562 * 21 20 18 49 49 H 1.09002 * 109.22493 * 247.81706 * 28 10 8 50 50 H 1.08997 * 109.22696 * 7.22346 * 28 10 8 51 51 H 1.07998 * 119.99526 * 179.72174 * 29 6 5 52 52 H 1.08002 * 119.99997 * 180.23189 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7239 3.3756 1.1970 6 6 2.9554 4.0269 -0.0002 7 6 3.4589 5.4473 -0.0003 8 6 4.9658 5.4461 0.0004 9 8 5.5715 4.3952 0.0004 10 7 5.6407 6.6127 0.0000 11 6 4.9332 7.9030 -0.0006 12 6 5.3957 8.6953 -1.2230 13 6 6.9156 8.8779 -1.2023 14 1 7.2510 9.5724 -0.4320 15 6 7.3254 9.3237 -2.6403 16 6 7.2994 7.9937 -3.4261 17 7 7.4642 6.9058 -2.4447 18 6 7.4660 5.5646 -2.7210 19 1 7.5955 4.8491 -1.9225 20 6 7.3015 5.1247 -4.0272 21 7 7.1441 5.9969 -5.0004 22 14 7.3033 3.2951 -4.4039 23 1 6.1990 2.6358 -3.6616 24 1 7.1120 3.0898 -5.8621 25 1 8.6010 2.7054 -3.9876 26 6 7.6259 7.5139 -1.1221 27 1 8.6900 7.6885 -0.9625 28 6 7.1080 6.6426 0.0011 29 6 2.7201 3.3768 -1.1973 30 6 2.2625 2.0725 -1.1972 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.0830 1.5634 2.1325 37 1 2.9043 3.8847 2.1323 38 1 3.0956 5.9616 0.8895 39 1 3.0963 5.9612 -0.8904 40 1 3.8579 7.7336 -0.0565 41 1 5.1724 8.4548 0.9084 42 1 5.1112 8.1585 -2.1279 43 1 4.9152 9.6736 -1.2201 44 1 6.6004 10.0281 -3.0481 45 1 8.3269 9.7540 -2.6411 46 1 6.3456 7.8864 -3.9424 47 1 8.1161 7.9731 -4.1476 48 1 7.0287 5.6895 -5.9131 49 1 7.4582 7.0393 0.9541 50 1 7.4878 5.6291 -0.1271 51 1 2.8967 3.8871 -2.1326 52 1 2.0822 1.5634 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042249199.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:29 Heat of formation + Delta-G solvation = 9.463555 kcal Electronic energy + Delta-G solvation = -31266.669946 eV Core-core repulsion = 27424.115499 eV Total energy + Delta-G solvation = -3842.554447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.09477 -39.23248 -37.88072 -34.93808 -34.53213 -32.78232 -31.55787 -30.89561 -30.73138 -29.17271 -28.36191 -27.00229 -24.59564 -23.97813 -22.93101 -22.56592 -22.48835 -20.63481 -19.95618 -19.47756 -18.15940 -16.72334 -16.53792 -16.10854 -15.70185 -15.31651 -15.01612 -14.70849 -14.57033 -14.22462 -13.91545 -13.74790 -13.70539 -13.48355 -13.26611 -13.03778 -12.87558 -12.68882 -12.57996 -12.07149 -11.96461 -11.74864 -11.62986 -11.54913 -11.33398 -11.20962 -11.17574 -10.88781 -10.77683 -10.72806 -10.69741 -10.63543 -10.09903 -9.83792 -9.79607 -9.62821 -9.46191 -9.23300 -8.69473 -8.49110 -8.31449 -8.04763 -6.72769 -5.60741 -2.92277 1.49326 1.63099 3.19664 3.50328 3.51636 3.53506 3.60807 3.98188 4.61757 4.73425 4.84245 4.92713 4.97670 5.09506 5.11181 5.16836 5.21944 5.28620 5.35420 5.43398 5.49017 5.52988 5.55388 5.59919 5.68698 5.72288 5.74035 5.75593 5.79296 5.82916 5.95317 6.00744 6.04135 6.07253 6.16262 6.23683 6.26619 6.29758 6.32788 6.46693 6.51206 6.59220 6.65387 6.76869 6.78081 6.82192 6.96734 7.14553 7.20693 7.64705 7.67526 7.94192 7.97937 8.33920 8.78473 9.33321 9.94070 10.58399 11.51569 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011557 B = 0.003921 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.293204 B = 7139.848395 C = 8786.089590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.089 4.089 4 C -0.120 4.120 5 C -0.104 4.104 6 C -0.062 4.062 7 C -0.100 4.100 8 C 0.523 3.477 9 O -0.527 6.527 10 N -0.597 5.597 11 C 0.111 3.889 12 C -0.123 4.123 13 C -0.101 4.101 14 H 0.075 0.925 15 C -0.144 4.144 16 C 0.179 3.821 17 N -0.588 5.588 18 C -0.211 4.211 19 H 0.081 0.919 20 C -0.007 4.007 21 N -0.927 5.927 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.293 1.293 25 H -0.287 1.287 26 C 0.153 3.847 27 H 0.025 0.975 28 C 0.115 3.885 29 C -0.096 4.096 30 C -0.116 4.116 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.044 0.956 47 H 0.040 0.960 48 H 0.249 0.751 49 H 0.052 0.948 50 H 0.094 0.906 51 H 0.122 0.878 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.966 1.243 12.407 17.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.138 4.138 5 C -0.122 4.122 6 C -0.062 4.062 7 C -0.140 4.140 8 C 0.310 3.690 9 O -0.402 6.402 10 N -0.331 5.331 11 C -0.012 4.012 12 C -0.161 4.161 13 C -0.121 4.121 14 H 0.093 0.907 15 C -0.183 4.183 16 C 0.054 3.946 17 N -0.314 5.314 18 C -0.339 4.339 19 H 0.098 0.902 20 C -0.202 4.202 21 N -0.576 5.576 22 Si 0.733 3.267 23 H -0.209 1.209 24 H -0.219 1.219 25 H -0.214 1.214 26 C 0.045 3.955 27 H 0.043 0.957 28 C -0.008 4.008 29 C -0.114 4.114 30 C -0.134 4.134 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.070 0.930 50 H 0.112 0.888 51 H 0.140 0.860 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.654 0.498 12.191 16.873 hybrid contribution 0.139 -0.748 -0.484 0.901 sum -11.515 -0.250 11.708 16.423 Atomic orbital electron populations 1.21741 0.94952 1.01384 1.02143 1.20517 0.95939 0.93001 1.02694 1.19815 0.99795 0.95960 0.93289 1.20863 1.00980 0.94800 0.97201 1.20883 0.99306 0.94906 0.97150 1.19288 0.98583 0.94922 0.93453 1.20678 0.93629 0.95245 1.04444 1.20176 0.89050 0.83433 0.76316 1.90707 1.69932 1.30710 1.48877 1.47807 1.06890 1.05154 1.73214 1.21641 0.96445 0.84706 0.98457 1.21824 0.95901 0.99235 0.99124 1.22356 0.94962 0.97380 0.97372 0.90704 1.23174 0.99696 0.99693 0.95707 1.21200 1.00622 0.82501 0.90252 1.44281 1.85110 1.02067 0.99912 1.18995 1.41452 0.80776 0.92710 0.90172 1.24663 1.02565 0.97245 0.95742 1.69952 1.56938 1.31371 0.99296 0.86314 0.78235 0.85576 0.76548 1.20902 1.21922 1.21356 1.20723 0.96090 0.90917 0.87803 0.95732 1.21359 0.79235 1.03219 0.97035 1.21050 0.97665 0.94873 0.97770 1.20954 1.00257 0.94773 0.97405 0.92567 0.92657 0.92665 0.91161 0.91256 0.86534 0.86541 0.88715 0.88204 0.90530 0.91912 0.90122 0.92094 0.92333 0.92786 0.93787 0.94177 0.94075 0.92976 0.88791 0.86000 0.86372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.89 37.16 0.37 -0.92 16 2 C -0.08 -0.89 6.06 -27.88 -0.17 -1.05 16 3 C -0.09 -1.19 5.13 -104.62 -0.54 -1.72 16 4 C -0.12 -1.59 9.70 -39.58 -0.38 -1.97 16 5 C -0.10 -1.47 9.70 -39.58 -0.38 -1.85 16 6 C -0.06 -0.97 4.37 -104.62 -0.46 -1.42 16 7 C -0.10 -1.44 4.20 -29.04 -0.12 -1.56 16 8 C 0.52 9.78 7.71 -10.99 -0.08 9.69 16 9 O -0.53 -12.22 15.49 5.55 0.09 -12.14 16 10 N -0.60 -10.28 2.97 -174.07 -0.52 -10.80 16 11 C 0.11 1.46 6.35 -3.77 -0.02 1.44 16 12 C -0.12 -1.82 5.05 -26.76 -0.14 -1.96 16 13 C -0.10 -1.64 3.68 -88.43 -0.32 -1.96 16 14 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 15 C -0.14 -2.58 6.33 -24.32 -0.15 -2.74 16 16 C 0.18 4.24 4.61 -2.74 -0.01 4.23 16 17 N -0.59 -14.55 3.20 -164.41 -0.53 -15.07 16 18 C -0.21 -5.95 9.70 -15.06 -0.15 -6.09 16 19 H 0.08 2.34 6.51 -52.49 -0.34 2.00 16 20 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 21 N -0.93 -27.57 10.38 55.49 0.58 -27.00 16 22 Si 0.90 23.71 29.55 -169.99 -5.02 18.68 16 23 H -0.28 -7.56 7.11 56.52 0.40 -7.16 16 24 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 26 C 0.15 3.05 2.97 -68.29 -0.20 2.84 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 C 0.11 2.15 5.69 -4.76 -0.03 2.12 16 29 C -0.10 -1.57 9.70 -39.58 -0.38 -1.95 16 30 C -0.12 -1.73 9.70 -39.58 -0.38 -2.11 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 35 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 36 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.09 1.04 7.85 -51.93 -0.41 0.64 16 39 H 0.10 1.36 7.73 -51.93 -0.40 0.96 16 40 H 0.08 0.84 6.02 -51.93 -0.31 0.53 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 1.51 6.85 -51.93 -0.36 1.15 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.94 7.97 -51.93 -0.41 0.53 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.04 1.16 7.04 -51.93 -0.37 0.79 16 47 H 0.04 1.07 7.57 -51.93 -0.39 0.68 16 48 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.09 2.09 5.53 -51.93 -0.29 1.81 16 51 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 52 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 402.02 15.07 6.06 6.06 Total: -1.00 -33.79 402.02 -11.76 -45.55 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -8.75 Total: 1.99 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -3.66 Total: -7.28 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.47 Total: -52.87 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.02 Total: 18.68 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.79 -11.76 -45.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042249199.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.015 kcal (2) G-P(sol) polarization free energy of solvation -33.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds