Wall clock time and date at job start Wed Apr 1 2020 02:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47198 * 2 1 4 4 C 1.38230 * 120.00020 * 89.99618 * 3 2 1 5 5 C 1.38238 * 119.99682 * 179.97438 * 4 3 2 6 6 C 1.38243 * 120.00185 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00020 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47005 * 90.00246 * 7 6 5 9 9 O 1.21288 * 120.00331 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00233 * 179.97438 * 8 7 6 11 11 C 1.47149 * 121.21339 * 0.02562 * 10 8 7 12 12 C 1.52839 * 108.02111 * 237.23201 * 11 10 8 13 13 C 1.53103 * 110.57307 * 302.73470 * 12 11 10 14 14 H 1.08995 * 113.01894 * 288.91070 * 13 12 11 15 15 C 1.56029 * 106.39884 * 164.50694 * 13 12 11 16 16 C 1.54500 * 102.61367 * 281.58268 * 15 13 12 17 17 N 1.47440 * 107.14366 * 337.14483 * 16 15 13 18 18 C 1.36938 * 126.05437 * 178.40713 * 17 16 15 19 19 H 1.07998 * 119.99447 * 179.97438 * 18 17 16 20 20 C 1.38808 * 120.00501 * 359.97262 * 18 17 16 21 21 N 1.31626 * 119.99807 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00253 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46952 * 60.00166 * 22 20 18 24 24 H 1.48496 * 109.47025 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46928 * 300.00324 * 22 20 18 26 26 C 1.46462 * 107.88068 * 358.38611 * 17 16 15 27 27 H 1.09001 * 107.85616 * 270.36409 * 26 17 16 28 28 C 1.46763 * 121.21748 * 179.97438 * 10 8 7 29 29 C 1.38236 * 119.99500 * 0.27614 * 6 5 4 30 30 C 1.38231 * 120.00262 * 359.54020 * 29 6 5 31 31 H 1.09002 * 109.47097 * 60.00517 * 1 2 3 32 32 H 1.09007 * 109.46985 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47368 * 300.00312 * 1 2 3 34 34 H 1.08992 * 109.47474 * 239.99683 * 2 1 3 35 35 H 1.09002 * 109.47097 * 119.99483 * 2 1 3 36 36 H 1.07998 * 120.00632 * 0.02562 * 4 3 2 37 37 H 1.08002 * 119.99774 * 180.02562 * 5 4 3 38 38 H 1.08997 * 109.47192 * 330.00506 * 7 6 5 39 39 H 1.08996 * 109.46908 * 210.00498 * 7 6 5 40 40 H 1.09002 * 109.76041 * 356.87766 * 11 10 8 41 41 H 1.08997 * 109.76162 * 117.58357 * 11 10 8 42 42 H 1.08991 * 109.25511 * 62.96470 * 12 11 10 43 43 H 1.08997 * 109.25521 * 182.40302 * 12 11 10 44 44 H 1.09000 * 110.77945 * 39.86124 * 15 13 12 45 45 H 1.09005 * 110.78123 * 163.29570 * 15 13 12 46 46 H 1.08994 * 109.90716 * 96.52588 * 16 15 13 47 47 H 1.09001 * 109.90121 * 217.58700 * 16 15 13 48 48 H 0.96996 * 119.99635 * 180.02562 * 21 20 18 49 49 H 1.09002 * 109.22493 * 247.81706 * 28 10 8 50 50 H 1.08997 * 109.22696 * 7.22346 * 28 10 8 51 51 H 1.07998 * 119.99526 * 179.72174 * 29 6 5 52 52 H 1.08002 * 119.99997 * 180.23189 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7239 3.3756 1.1970 6 6 2.9554 4.0269 -0.0002 7 6 3.4589 5.4473 -0.0003 8 6 4.9658 5.4461 0.0004 9 8 5.5715 4.3952 0.0004 10 7 5.6407 6.6127 0.0000 11 6 4.9332 7.9030 -0.0006 12 6 5.3957 8.6953 -1.2230 13 6 6.9156 8.8779 -1.2023 14 1 7.2510 9.5724 -0.4320 15 6 7.3254 9.3237 -2.6403 16 6 7.2994 7.9937 -3.4261 17 7 7.4642 6.9058 -2.4447 18 6 7.4660 5.5646 -2.7210 19 1 7.5955 4.8491 -1.9225 20 6 7.3015 5.1247 -4.0272 21 7 7.1441 5.9969 -5.0004 22 14 7.3033 3.2951 -4.4039 23 1 6.1990 2.6358 -3.6616 24 1 7.1120 3.0898 -5.8621 25 1 8.6010 2.7054 -3.9876 26 6 7.6259 7.5139 -1.1221 27 1 8.6900 7.6885 -0.9625 28 6 7.1080 6.6426 0.0011 29 6 2.7201 3.3768 -1.1973 30 6 2.2625 2.0725 -1.1972 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.0830 1.5634 2.1325 37 1 2.9043 3.8847 2.1323 38 1 3.0956 5.9616 0.8895 39 1 3.0963 5.9612 -0.8904 40 1 3.8579 7.7336 -0.0565 41 1 5.1724 8.4548 0.9084 42 1 5.1112 8.1585 -2.1279 43 1 4.9152 9.6736 -1.2201 44 1 6.6004 10.0281 -3.0481 45 1 8.3269 9.7540 -2.6411 46 1 6.3456 7.8864 -3.9424 47 1 8.1161 7.9731 -4.1476 48 1 7.0287 5.6895 -5.9131 49 1 7.4582 7.0393 0.9541 50 1 7.4878 5.6291 -0.1271 51 1 2.8967 3.8871 -2.1326 52 1 2.0822 1.5634 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042249199.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:27 Heat of formation + Delta-G solvation = -9.375181 kcal Electronic energy + Delta-G solvation = -31267.486855 eV Core-core repulsion = 27424.115499 eV Total energy + Delta-G solvation = -3843.371356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.45759 -40.43845 -39.34946 -36.48590 -35.54636 -34.64547 -32.95881 -32.26112 -31.83082 -30.66362 -30.04318 -28.14082 -26.48951 -25.40353 -24.00467 -23.81499 -23.66853 -21.77147 -21.70833 -20.85652 -19.61423 -18.45144 -18.06057 -17.31885 -16.88755 -16.82388 -16.43321 -16.17225 -15.91351 -15.83642 -15.54962 -15.12564 -14.67571 -14.63063 -14.45914 -14.28108 -14.16992 -14.04926 -13.74584 -13.72112 -13.25568 -13.12905 -13.02260 -12.89705 -12.84150 -12.64005 -12.61350 -12.46470 -12.30553 -12.09475 -12.08140 -11.71621 -11.68068 -11.66284 -11.38504 -11.25359 -11.11171 -10.68738 -10.67241 -9.81846 -9.43526 -9.40960 -8.80291 -7.85508 -5.14450 0.38697 0.50423 1.31740 1.34532 1.42651 1.80232 2.23764 2.45415 2.85784 3.33268 3.53611 3.68787 3.84893 3.87341 3.91784 3.94775 3.99792 4.11359 4.14094 4.19193 4.34018 4.43987 4.46852 4.51388 4.52447 4.56295 4.57858 4.64489 4.69750 4.72126 4.74811 4.76326 4.89969 4.93322 5.02965 5.05045 5.06182 5.15757 5.17072 5.18348 5.20167 5.34565 5.37002 5.49813 5.52854 5.67580 5.68351 5.70644 5.73355 5.77006 5.82237 6.12452 6.22671 6.65018 7.14724 7.40070 7.83107 8.45889 9.24961 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011557 B = 0.003921 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.293204 B = 7139.848395 C = 8786.089590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 C -0.091 4.091 4 C -0.123 4.123 5 C -0.109 4.109 6 C -0.080 4.080 7 C -0.090 4.090 8 C 0.511 3.489 9 O -0.586 6.586 10 N -0.599 5.599 11 C 0.107 3.893 12 C -0.120 4.120 13 C -0.083 4.083 14 H 0.123 0.877 15 C -0.130 4.130 16 C 0.186 3.814 17 N -0.605 5.605 18 C -0.200 4.200 19 H 0.063 0.937 20 C -0.059 4.059 21 N -0.948 5.948 22 Si 0.949 3.051 23 H -0.295 1.295 24 H -0.288 1.288 25 H -0.284 1.284 26 C 0.141 3.859 27 H 0.023 0.977 28 C 0.119 3.881 29 C -0.126 4.126 30 C -0.134 4.134 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.032 0.968 43 H 0.103 0.897 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.007 0.993 47 H -0.004 1.004 48 H 0.242 0.758 49 H 0.092 0.908 50 H 0.046 0.954 51 H 0.100 0.900 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.526 3.136 15.889 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.140 4.140 5 C -0.126 4.126 6 C -0.080 4.080 7 C -0.129 4.129 8 C 0.300 3.700 9 O -0.466 6.466 10 N -0.331 5.331 11 C -0.015 4.015 12 C -0.158 4.158 13 C -0.102 4.102 14 H 0.141 0.859 15 C -0.169 4.169 16 C 0.061 3.939 17 N -0.330 5.330 18 C -0.330 4.330 19 H 0.081 0.919 20 C -0.252 4.252 21 N -0.599 5.599 22 Si 0.780 3.220 23 H -0.222 1.222 24 H -0.214 1.214 25 H -0.210 1.210 26 C 0.034 3.966 27 H 0.040 0.960 28 C -0.005 4.005 29 C -0.144 4.144 30 C -0.152 4.152 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.164 0.836 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.051 0.949 43 H 0.121 0.879 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.026 0.974 47 H 0.014 0.986 48 H 0.051 0.949 49 H 0.110 0.890 50 H 0.065 0.935 51 H 0.118 0.882 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.219 2.447 15.699 20.669 hybrid contribution 0.675 -1.346 -1.517 2.138 sum -12.544 1.101 14.182 18.966 Atomic orbital electron populations 1.21708 0.93507 1.02511 1.02028 1.20586 0.97118 0.91120 1.03299 1.20180 0.98871 0.97299 0.92786 1.21272 0.99859 0.94680 0.98239 1.21217 0.98606 0.95416 0.97409 1.19494 0.99099 0.95802 0.93645 1.20689 0.90324 0.95314 1.06579 1.20980 0.90770 0.83018 0.75207 1.90675 1.71370 1.32883 1.51629 1.48000 1.06410 1.06569 1.72111 1.22021 0.97573 0.82546 0.99313 1.21808 0.95108 1.01082 0.97850 1.22418 0.95558 0.95115 0.97157 0.85904 1.23040 1.01382 0.96345 0.96094 1.20961 0.96880 0.85705 0.90333 1.44457 1.84623 1.01193 1.02685 1.19001 1.39333 0.82662 0.91996 0.91917 1.25201 1.04004 0.99903 0.96060 1.70126 1.58653 1.32096 0.98989 0.85580 0.77647 0.82560 0.76251 1.22231 1.21366 1.21041 1.21051 0.96669 0.93196 0.85720 0.95996 1.21194 0.80632 1.00440 0.98244 1.21110 0.99696 0.95960 0.97679 1.21140 1.00893 0.94565 0.98621 0.93310 0.90907 0.92165 0.91382 0.89843 0.83603 0.84162 0.84354 0.87852 0.88001 0.87720 0.94907 0.87880 0.89914 0.91553 0.97437 0.98557 0.94851 0.89038 0.93497 0.88182 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.89 71.98 0.71 -1.53 16 2 C -0.08 -1.65 6.06 29.85 0.18 -1.47 16 3 C -0.09 -2.40 5.13 -19.87 -0.10 -2.50 16 4 C -0.12 -3.02 9.70 22.27 0.22 -2.81 16 5 C -0.11 -2.89 9.70 22.27 0.22 -2.67 16 6 C -0.08 -2.49 4.37 -19.86 -0.09 -2.58 16 7 C -0.09 -2.48 4.20 29.10 0.12 -2.35 16 8 C 0.51 19.03 7.71 87.65 0.68 19.71 16 9 O -0.59 -28.27 15.49 -3.06 -0.05 -28.32 16 10 N -0.60 -19.58 2.97 -823.03 -2.44 -22.02 16 11 C 0.11 2.33 6.35 86.20 0.55 2.87 16 12 C -0.12 -3.12 5.05 30.58 0.15 -2.96 16 13 C -0.08 -2.37 3.68 -9.37 -0.03 -2.41 16 14 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 15 C -0.13 -4.39 6.33 32.15 0.20 -4.18 16 16 C 0.19 9.12 4.61 86.71 0.40 9.52 16 17 N -0.60 -30.87 3.20 -674.06 -2.16 -33.02 16 18 C -0.20 -11.87 9.70 84.03 0.81 -11.06 16 19 H 0.06 3.91 6.51 -2.91 -0.02 3.89 16 20 C -0.06 -3.61 5.49 84.86 0.47 -3.15 16 21 N -0.95 -59.54 10.38 21.65 0.22 -59.32 16 22 Si 0.95 51.45 29.55 68.60 2.03 53.48 16 23 H -0.29 -16.43 7.11 99.48 0.71 -15.73 16 24 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16 25 H -0.28 -15.07 7.11 99.48 0.71 -14.36 16 26 C 0.14 5.44 2.97 44.78 0.13 5.58 16 27 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 28 C 0.12 4.33 5.69 85.77 0.49 4.82 16 29 C -0.13 -4.39 9.70 22.27 0.22 -4.17 16 30 C -0.13 -4.17 9.70 22.27 0.22 -3.96 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 1.36 8.08 -2.39 -0.02 1.34 16 35 H 0.08 1.41 8.09 -2.39 -0.02 1.39 16 36 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 37 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 38 H 0.14 2.52 7.85 -2.39 -0.02 2.50 16 39 H 0.10 2.75 7.73 -2.39 -0.02 2.73 16 40 H 0.10 1.74 6.02 -2.39 -0.01 1.73 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.03 1.18 6.85 -2.39 -0.02 1.16 16 43 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.08 2.41 7.97 -2.39 -0.02 2.39 16 45 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 46 H 0.01 0.41 7.04 -2.39 -0.02 0.39 16 47 H 0.00 -0.22 7.57 -2.39 -0.02 -0.24 16 48 H 0.24 14.98 8.31 -92.71 -0.77 14.21 16 49 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 50 H 0.05 2.16 5.53 -2.39 -0.01 2.15 16 51 H 0.10 3.74 8.06 -2.91 -0.02 3.72 16 52 H 0.12 3.49 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -82.70 402.02 4.03 -78.67 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.89 Total: 15.82 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 5.54 Total: -5.29 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -4.37 Total: -114.36 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.05 Total: -28.32 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.03 Total: 53.48 kcal Total: -82.70 4.03 -78.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042249199.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.294 kcal (2) G-P(sol) polarization free energy of solvation -82.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds