Wall clock time and date at job start Wed Apr 1 2020 03:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46978 * 2 1 4 4 C 1.50700 * 109.47142 * 240.00164 * 2 1 3 5 5 O 1.21285 * 119.99971 * 352.58346 * 4 2 1 6 6 N 1.34784 * 120.00008 * 172.58236 * 4 2 1 7 7 C 1.44465 * 117.13574 * 4.96715 * 6 4 2 8 8 C 1.50981 * 113.13328 * 148.27542 * 7 6 4 9 9 C 1.48608 * 116.02696 * 32.07604 * 8 7 6 10 10 H 1.09003 * 105.76868 * 206.02874 * 9 8 7 11 11 C 1.53311 * 114.96112 * 90.57834 * 9 8 7 12 12 C 1.54521 * 102.38814 * 196.30708 * 11 9 8 13 13 N 1.46886 * 106.65907 * 27.58949 * 12 11 9 14 14 C 1.36936 * 125.36173 * 164.88264 * 13 12 11 15 15 H 1.08000 * 120.00540 * 180.02562 * 14 13 12 16 16 C 1.38819 * 119.99715 * 0.02805 * 14 13 12 17 17 N 1.31616 * 120.00066 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00153 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46991 * 59.99593 * 18 16 14 20 20 H 1.48494 * 109.47161 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46947 * 300.00111 * 18 16 14 22 22 C 1.48182 * 109.28387 * 344.86137 * 13 12 11 23 23 H 1.08996 * 109.74318 * 237.27643 * 22 13 12 24 24 C 1.43936 * 117.13308 * 184.70331 * 6 4 2 25 25 C 1.50696 * 109.47149 * 120.00210 * 2 1 3 26 26 C 1.38232 * 120.00232 * 109.92906 * 25 2 1 27 27 C 1.38234 * 120.00224 * 180.27742 * 26 25 2 28 28 C 1.38238 * 119.99712 * 359.46391 * 27 26 25 29 29 C 1.38238 * 119.99928 * 0.25384 * 28 27 26 30 30 C 1.38231 * 119.99942 * 0.02562 * 29 28 27 31 31 H 1.09001 * 109.47035 * 304.81015 * 1 2 3 32 32 H 1.09001 * 109.47105 * 64.81368 * 1 2 3 33 33 H 1.09000 * 109.47028 * 184.81028 * 1 2 3 34 34 H 1.09004 * 109.47276 * 167.24276 * 3 2 1 35 35 H 1.09006 * 109.46881 * 287.24167 * 3 2 1 36 36 H 1.08997 * 109.46793 * 47.23775 * 3 2 1 37 37 H 1.08997 * 108.75014 * 269.21739 * 7 6 4 38 38 H 1.09004 * 108.75139 * 27.44718 * 7 6 4 39 39 H 1.08997 * 108.17205 * 153.77848 * 8 7 6 40 40 H 1.08997 * 108.16939 * 270.37130 * 8 7 6 41 41 H 1.08999 * 110.82486 * 314.53290 * 11 9 8 42 42 H 1.09006 * 110.82429 * 77.88629 * 11 9 8 43 43 H 1.08993 * 110.02426 * 146.88904 * 12 11 9 44 44 H 1.09004 * 110.02142 * 268.24658 * 12 11 9 45 45 H 0.97000 * 120.00249 * 179.97438 * 17 16 14 46 46 H 1.08993 * 108.42414 * 332.79475 * 24 6 4 47 47 H 1.08999 * 108.41966 * 90.04342 * 24 6 4 48 48 H 1.07999 * 120.00231 * 0.02562 * 26 25 2 49 49 H 1.07997 * 120.00471 * 179.73995 * 27 26 25 50 50 H 1.08006 * 120.00108 * 180.27731 * 28 27 26 51 51 H 1.07997 * 119.99867 * 180.02562 * 29 28 27 52 52 H 1.08003 * 119.99881 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.2525 -1.2872 -1.9585 6 7 3.3483 -0.7046 -1.5219 7 6 4.2341 -0.0947 -0.5574 8 6 5.5996 -0.7377 -0.5164 9 6 6.1001 -1.2880 -1.8030 10 1 6.7995 -2.0797 -1.5344 11 6 6.9156 -0.3066 -2.6528 12 6 6.9164 -0.9896 -4.0388 13 7 5.6909 -1.7961 -4.1116 14 6 5.1564 -2.3240 -5.2564 15 1 4.2476 -2.9057 -5.2099 16 6 5.7827 -2.1116 -6.4769 17 7 6.8900 -1.4024 -6.5338 18 14 5.0541 -2.8323 -8.0387 19 1 3.6845 -2.2946 -8.2398 20 1 5.9061 -2.4645 -9.1980 21 1 4.9926 -4.3112 -7.9196 22 6 5.1242 -1.9490 -2.7509 23 1 5.0330 -3.0073 -2.5068 24 6 3.7481 -1.3119 -2.7641 25 6 2.0323 -0.7104 1.2304 26 6 2.6474 -1.9429 1.1142 27 6 3.1031 -2.5972 2.2435 28 6 2.9535 -2.0139 3.4878 29 6 2.3436 -0.7788 3.6034 30 6 1.8828 -0.1272 2.4747 31 1 -0.3633 0.5867 0.8438 32 1 -0.3633 0.4373 -0.9300 33 1 -0.3633 -1.0240 0.0862 34 1 3.1061 1.4511 0.2269 35 1 1.8739 1.8866 -0.9816 36 1 1.5032 2.0176 0.7545 37 1 4.3508 0.9599 -0.8067 38 1 3.7823 -0.1723 0.4315 39 1 6.3147 0.0052 -0.1634 40 1 5.5719 -1.5480 0.2121 41 1 6.4248 0.6655 -2.7002 42 1 7.9297 -0.2083 -2.2653 43 1 6.9144 -0.2360 -4.8263 44 1 7.7923 -1.6308 -4.1384 45 1 7.3279 -1.2542 -7.3865 46 1 3.0163 -2.0762 -3.0252 47 1 3.7343 -0.5477 -3.5413 48 1 2.7684 -2.3965 0.1416 49 1 3.5799 -3.5620 2.1531 50 1 3.3135 -2.5231 4.3697 51 1 2.2272 -0.3229 4.5755 52 1 1.4060 0.8377 2.5651 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042344121.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:48 Heat of formation + Delta-G solvation = 37.909583 kcal Electronic energy + Delta-G solvation = -32151.134524 eV Core-core repulsion = 28309.813589 eV Total energy + Delta-G solvation = -3841.320935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -41.44533 -39.18534 -38.24742 -35.66697 -35.13106 -33.18826 -31.58755 -31.08869 -29.99217 -29.44053 -28.67655 -27.22041 -25.29073 -24.61588 -23.29241 -22.67860 -22.59411 -21.24010 -20.31281 -19.13381 -17.92020 -17.25088 -16.92111 -16.49646 -15.78990 -15.40225 -15.11929 -14.97329 -14.70163 -14.60348 -14.39624 -13.96885 -13.83301 -13.76307 -13.39234 -13.24834 -12.61638 -12.52975 -12.37161 -12.30369 -12.20266 -12.16295 -12.01423 -11.70023 -11.50620 -11.37014 -11.22814 -11.20964 -10.94872 -10.86470 -10.74991 -10.62851 -10.11656 -9.92283 -9.88595 -9.60368 -9.51836 -9.43681 -9.07370 -8.78329 -8.60222 -8.13046 -6.88086 -5.67937 -3.06114 1.14190 1.23322 2.78173 3.31008 3.43504 3.47236 3.48993 3.59139 4.36027 4.41033 4.49252 4.78594 4.82417 4.88322 4.94524 4.96584 4.98795 5.06027 5.15057 5.29857 5.37275 5.38442 5.46825 5.52685 5.58862 5.61596 5.66232 5.67304 5.71894 5.82873 5.85230 5.87127 5.94338 6.00351 6.01792 6.11139 6.17499 6.21454 6.28357 6.31266 6.36926 6.41084 6.51545 6.60849 6.61943 6.80508 6.89094 6.99780 7.12535 7.54954 7.62849 7.68573 7.85376 8.29877 8.43698 9.22676 9.81684 10.45162 11.39362 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016578 B = 0.003472 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.551542 B = 8061.729346 C = 8735.955673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.043 4.043 3 C -0.156 4.156 4 C 0.511 3.489 5 O -0.537 6.537 6 N -0.584 5.584 7 C 0.098 3.902 8 C -0.107 4.107 9 C -0.091 4.091 10 H 0.054 0.946 11 C -0.136 4.136 12 C 0.167 3.833 13 N -0.595 5.595 14 C -0.227 4.227 15 H 0.078 0.922 16 C -0.006 4.006 17 N -0.922 5.922 18 Si 0.912 3.088 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.167 3.833 23 H 0.039 0.961 24 C 0.101 3.899 25 C -0.068 4.068 26 C -0.111 4.111 27 C -0.114 4.114 28 C -0.122 4.122 29 C -0.119 4.119 30 C -0.111 4.111 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.083 0.917 44 H 0.019 0.981 45 H 0.252 0.748 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.125 0.875 49 H 0.123 0.877 50 H 0.120 0.880 51 H 0.121 0.879 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.386 5.393 22.037 23.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.046 4.046 3 C -0.213 4.213 4 C 0.298 3.702 5 O -0.414 6.414 6 N -0.315 5.315 7 C -0.024 4.024 8 C -0.146 4.146 9 C -0.110 4.110 10 H 0.073 0.927 11 C -0.174 4.174 12 C 0.043 3.957 13 N -0.320 5.320 14 C -0.355 4.355 15 H 0.096 0.904 16 C -0.202 4.202 17 N -0.569 5.569 18 Si 0.742 3.258 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.059 3.941 23 H 0.057 0.943 24 C -0.024 4.024 25 C -0.069 4.069 26 C -0.129 4.129 27 C -0.132 4.132 28 C -0.140 4.140 29 C -0.137 4.137 30 C -0.129 4.129 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.037 0.963 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.085 0.915 48 H 0.143 0.857 49 H 0.141 0.859 50 H 0.138 0.862 51 H 0.140 0.860 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.637 5.059 21.343 22.917 hybrid contribution -0.148 -0.489 -0.882 1.019 sum -6.785 4.570 20.461 22.036 Atomic orbital electron populations 1.21649 0.91134 1.02902 1.02178 1.19809 0.97904 0.96029 0.90884 1.22325 1.02883 0.93063 1.03056 1.20443 0.82779 0.80560 0.86461 1.90690 1.55306 1.44002 1.51424 1.46742 1.06110 1.57466 1.21195 1.21312 0.91357 0.96629 0.93148 1.20328 0.95857 1.00756 0.97617 1.20048 0.97880 0.98945 0.94170 0.92706 1.22660 0.97963 0.98223 0.98603 1.21400 0.88069 0.94323 0.91955 1.44757 1.26209 1.60665 1.00389 1.19020 1.06302 1.26441 0.83780 0.90442 1.24775 0.97388 1.00419 0.97645 1.69919 1.19153 1.43627 1.24240 0.86191 0.78180 0.78704 0.82688 1.21038 1.21615 1.21164 1.20236 0.90463 0.96296 0.87121 0.94283 1.21575 0.98767 0.98719 0.83294 1.19495 0.98520 0.95057 0.93797 1.21292 0.97713 0.94520 0.99406 1.21147 0.99726 0.99959 0.92355 1.21164 0.99593 0.95815 0.97453 1.21101 0.98888 0.95427 0.98318 1.20921 1.00375 1.00098 0.91546 0.92057 0.91505 0.91802 0.90254 0.91578 0.91473 0.92427 0.89041 0.90871 0.92269 0.92628 0.92208 0.89949 0.96264 0.93736 0.90619 0.91459 0.85734 0.85932 0.86161 0.86050 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 7.62 37.16 0.28 -1.10 16 2 C -0.04 -0.51 0.60 -156.81 -0.09 -0.61 16 3 C -0.16 -1.53 7.28 37.16 0.27 -1.26 16 4 C 0.51 8.26 4.68 -10.98 -0.05 8.21 16 5 O -0.54 -10.77 15.17 5.55 0.08 -10.69 16 6 N -0.58 -9.40 2.65 -179.34 -0.47 -9.87 16 7 C 0.10 1.27 3.82 -6.14 -0.02 1.25 16 8 C -0.11 -1.40 5.54 -29.89 -0.17 -1.57 16 9 C -0.09 -1.54 2.32 -93.48 -0.22 -1.76 16 10 H 0.05 0.93 8.01 -51.93 -0.42 0.52 16 11 C -0.14 -2.48 6.47 -25.77 -0.17 -2.65 16 12 C 0.17 4.01 5.53 -3.03 -0.02 3.99 16 13 N -0.60 -14.96 2.91 -164.92 -0.48 -15.44 16 14 C -0.23 -6.32 9.82 -15.06 -0.15 -6.47 16 15 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 16 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 17 N -0.92 -26.88 10.23 55.49 0.57 -26.31 16 18 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 C 0.17 3.43 3.53 -68.57 -0.24 3.19 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 24 C 0.10 2.02 5.42 -6.09 -0.03 1.98 16 25 C -0.07 -0.75 2.95 -104.63 -0.31 -1.06 16 26 C -0.11 -1.34 7.48 -39.59 -0.30 -1.63 16 27 C -0.11 -1.16 10.05 -39.58 -0.40 -1.56 16 28 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 29 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 30 C -0.11 -0.99 9.01 -39.58 -0.36 -1.35 16 31 H 0.06 0.53 8.05 -51.93 -0.42 0.12 16 32 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 34 H 0.08 0.74 4.46 -51.93 -0.23 0.51 16 35 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 36 H 0.07 0.50 7.34 -51.93 -0.38 0.12 16 37 H 0.06 0.71 6.80 -51.93 -0.35 0.36 16 38 H 0.09 1.04 2.98 -51.93 -0.15 0.89 16 39 H 0.07 0.83 7.94 -51.93 -0.41 0.41 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.08 2.22 6.43 -51.93 -0.33 1.89 16 44 H 0.02 0.50 8.11 -51.93 -0.42 0.08 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 46 H 0.08 1.66 6.92 -51.93 -0.36 1.30 16 47 H 0.07 1.54 7.83 -51.93 -0.41 1.14 16 48 H 0.12 1.79 6.19 -52.49 -0.33 1.46 16 49 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 50 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 51 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 52 H 0.12 0.86 7.26 -52.48 -0.38 0.48 16 LS Contribution 385.00 15.07 5.80 5.80 Total: -1.00 -31.64 385.00 -10.74 -42.38 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -8.36 Total: 2.17 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -2.85 Total: -5.47 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.39 Total: -51.62 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.69 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.64 -10.74 -42.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042344121.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.285 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds