Wall clock time and date at job start Wed Apr 1 2020 03:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47148 * 2 1 4 4 C 1.50694 * 109.47386 * 119.99860 * 2 1 3 5 5 O 1.21280 * 120.00265 * 8.07743 * 4 2 1 6 6 N 1.34779 * 120.00352 * 188.08199 * 4 2 1 7 7 C 1.44756 * 117.18374 * 354.86924 * 6 4 2 8 8 C 1.51483 * 111.70852 * 213.71712 * 7 6 4 9 9 C 1.49446 * 114.08965 * 317.18058 * 8 7 6 10 10 H 1.08998 * 107.26959 * 166.17204 * 9 8 7 11 11 C 1.54526 * 112.97149 * 284.22857 * 9 8 7 12 12 C 1.55248 * 100.53977 * 166.31442 * 11 9 8 13 13 N 1.47469 * 105.14819 * 323.76025 * 12 11 9 14 14 C 1.36947 * 125.66082 * 200.99427 * 13 12 11 15 15 H 1.08001 * 119.99199 * 180.02562 * 14 13 12 16 16 C 1.38808 * 120.00104 * 0.02562 * 14 13 12 17 17 N 1.31611 * 120.00135 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99634 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47110 * 60.00457 * 18 16 14 20 20 H 1.48509 * 109.47154 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47660 * 300.00198 * 18 16 14 22 22 C 1.48526 * 108.53843 * 20.97065 * 13 12 11 23 23 H 1.09004 * 108.75518 * 121.12594 * 22 13 12 24 24 C 1.43784 * 117.18703 * 174.85414 * 6 4 2 25 25 C 1.50700 * 109.47554 * 240.00193 * 2 1 3 26 26 C 1.38234 * 119.99931 * 247.37767 * 25 2 1 27 27 C 1.38238 * 119.99939 * 179.78221 * 26 25 2 28 28 C 1.38236 * 120.00073 * 0.46303 * 27 26 25 29 29 C 1.38243 * 119.99749 * 359.76690 * 28 27 26 30 30 C 1.38230 * 120.00021 * 0.02562 * 29 28 27 31 31 H 1.08998 * 109.46945 * 299.99843 * 1 2 3 32 32 H 1.08999 * 109.47160 * 60.00164 * 1 2 3 33 33 H 1.09002 * 109.46860 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46932 * 192.18300 * 3 2 1 35 35 H 1.09001 * 109.46858 * 312.18263 * 3 2 1 36 36 H 1.08998 * 109.47332 * 72.17799 * 3 2 1 37 37 H 1.09001 * 109.02933 * 334.29173 * 7 6 4 38 38 H 1.09001 * 109.03120 * 93.13996 * 7 6 4 39 39 H 1.09004 * 108.56212 * 195.98829 * 8 7 6 40 40 H 1.09000 * 108.56036 * 78.37110 * 8 7 6 41 41 H 1.09004 * 111.19829 * 48.50046 * 11 9 8 42 42 H 1.08993 * 111.24068 * 284.15373 * 11 9 8 43 43 H 1.08997 * 110.32206 * 82.70516 * 12 11 9 44 44 H 1.09001 * 110.32678 * 204.81078 * 12 11 9 45 45 H 0.97003 * 120.00170 * 179.97438 * 17 16 14 46 46 H 1.08998 * 108.05936 * 35.60315 * 24 6 4 47 47 H 1.09003 * 108.05804 * 279.11366 * 24 6 4 48 48 H 1.07999 * 119.99908 * 359.97438 * 26 25 2 49 49 H 1.08000 * 119.99939 * 180.24934 * 27 26 25 50 50 H 1.07997 * 120.00315 * 179.78821 * 28 27 26 51 51 H 1.07992 * 119.99600 * 180.02562 * 29 28 27 52 52 H 1.08001 * 120.00106 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2304 5 8 1.2541 -1.2973 1.9520 6 7 3.3465 -0.6933 1.5291 7 6 4.2349 -0.0735 0.5689 8 6 5.5837 -0.7619 0.5279 9 6 6.1329 -1.1084 1.8739 10 1 6.9583 -1.8030 1.7176 11 6 6.6987 0.1161 2.6278 12 6 6.8401 -0.4715 4.0579 13 7 5.6843 -1.3729 4.2202 14 6 5.1618 -1.7940 5.4139 15 1 4.3098 -2.4576 5.4262 16 6 5.7270 -1.3678 6.6080 17 7 6.7649 -0.5587 6.5929 18 14 5.0136 -1.9417 8.2362 19 1 5.0859 -3.4229 8.3136 20 1 5.7912 -1.3486 9.3538 21 1 3.5965 -1.5093 8.3357 22 6 5.1833 -1.7457 2.8726 23 1 5.2270 -2.8301 2.7701 24 6 3.7450 -1.2920 2.7741 25 6 2.0324 -0.7103 -1.2305 26 6 2.6970 -1.9164 -1.1093 27 6 3.1539 -2.5702 -2.2384 28 6 2.9547 -2.0133 -3.4878 29 6 2.2942 -0.8048 -3.6085 30 6 1.8336 -0.1532 -2.4799 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 3.1081 1.4502 -0.2169 35 1 1.5105 2.0151 -0.7615 36 1 1.8646 1.8900 0.9783 37 1 3.7799 -0.1238 -0.4203 38 1 4.3777 0.9725 0.8403 39 1 6.2927 -0.1062 0.0222 40 1 5.4879 -1.6785 -0.0542 41 1 5.9952 0.9485 2.6116 42 1 7.6672 0.4140 2.2265 43 1 7.7716 -1.0304 4.1470 44 1 6.8054 0.3261 4.8000 45 1 7.1597 -0.2605 7.4273 46 1 3.1051 -2.1558 2.9538 47 1 3.5634 -0.5695 3.5699 48 1 2.8565 -2.3493 -0.1329 49 1 3.6696 -3.5144 -2.1440 50 1 3.3147 -2.5224 -4.3696 51 1 2.1383 -0.3700 -4.5847 52 1 1.3180 0.7911 -2.5742 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042344124.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:11 Heat of formation + Delta-G solvation = 38.775488 kcal Electronic energy + Delta-G solvation = -32187.278876 eV Core-core repulsion = 28345.995490 eV Total energy + Delta-G solvation = -3841.283386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.44802 -39.17592 -38.22105 -35.62801 -35.09919 -33.11697 -31.57655 -31.07273 -29.98974 -29.37600 -28.57487 -27.20337 -25.23267 -24.57340 -23.29132 -22.69137 -22.59088 -21.25422 -20.30800 -19.10709 -17.90965 -17.28894 -16.95590 -16.49071 -15.76167 -15.40922 -15.10011 -14.93770 -14.67104 -14.57024 -14.36385 -13.94962 -13.85604 -13.76096 -13.41261 -13.21889 -12.62450 -12.54245 -12.39417 -12.29043 -12.21526 -12.15898 -11.99419 -11.62829 -11.46128 -11.34802 -11.22997 -11.18680 -10.97575 -10.86549 -10.74796 -10.63899 -10.11220 -9.94784 -9.84986 -9.62578 -9.48948 -9.42709 -9.07226 -8.79310 -8.63828 -8.12607 -6.89113 -5.66146 -3.06762 1.14140 1.23104 2.79028 3.30368 3.43168 3.46952 3.48643 3.58985 4.36400 4.41521 4.48430 4.79033 4.82453 4.89808 4.95557 4.96546 5.02748 5.06764 5.15554 5.29955 5.37263 5.38170 5.46711 5.51594 5.58789 5.66043 5.66880 5.67741 5.72907 5.81423 5.84037 5.86781 5.93423 6.01112 6.01567 6.11573 6.18271 6.21950 6.27068 6.30818 6.36422 6.40860 6.50229 6.58456 6.65352 6.80299 6.83661 7.01322 7.12381 7.52395 7.62218 7.67518 7.85063 8.31652 8.44014 9.21273 9.80776 10.45583 11.38894 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017020 B = 0.003471 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.693617 B = 8064.988657 C = 8753.963748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.043 4.043 3 C -0.157 4.157 4 C 0.511 3.489 5 O -0.537 6.537 6 N -0.583 5.583 7 C 0.097 3.903 8 C -0.112 4.112 9 C -0.091 4.091 10 H 0.063 0.937 11 C -0.140 4.140 12 C 0.158 3.842 13 N -0.597 5.597 14 C -0.224 4.224 15 H 0.077 0.923 16 C -0.008 4.008 17 N -0.922 5.922 18 Si 0.913 3.087 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.165 3.835 23 H 0.038 0.962 24 C 0.105 3.895 25 C -0.069 4.069 26 C -0.112 4.112 27 C -0.114 4.114 28 C -0.122 4.122 29 C -0.119 4.119 30 C -0.111 4.111 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.015 0.985 44 H 0.097 0.903 45 H 0.252 0.748 46 H 0.066 0.934 47 H 0.071 0.929 48 H 0.125 0.875 49 H 0.122 0.878 50 H 0.120 0.880 51 H 0.121 0.879 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.164 3.328 -22.306 23.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.046 4.046 3 C -0.214 4.214 4 C 0.298 3.702 5 O -0.414 6.414 6 N -0.315 5.315 7 C -0.026 4.026 8 C -0.150 4.150 9 C -0.110 4.110 10 H 0.082 0.918 11 C -0.179 4.179 12 C 0.033 3.967 13 N -0.322 5.322 14 C -0.352 4.352 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.570 5.570 18 Si 0.743 3.257 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.057 3.943 23 H 0.056 0.944 24 C -0.020 4.020 25 C -0.069 4.069 26 C -0.130 4.130 27 C -0.132 4.132 28 C -0.140 4.140 29 C -0.137 4.137 30 C -0.129 4.129 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.033 0.967 44 H 0.114 0.886 45 H 0.063 0.937 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.143 0.857 49 H 0.140 0.860 50 H 0.138 0.862 51 H 0.139 0.861 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.439 3.022 -21.601 22.742 hybrid contribution -0.166 -0.412 0.928 1.029 sum -6.605 2.610 -20.673 21.859 Atomic orbital electron populations 1.21651 0.91146 1.03131 1.01972 1.19802 0.97899 0.96032 0.90847 1.22338 1.02938 0.93037 1.03083 1.20423 0.82640 0.80692 0.86476 1.90688 1.55359 1.43581 1.51802 1.46760 1.06309 1.57421 1.20982 1.21500 0.91260 0.96632 0.93172 1.20639 0.95924 1.00862 0.97583 1.20608 0.98219 0.98825 0.93380 0.91822 1.23034 0.99064 0.96516 0.99258 1.21843 0.88752 0.94410 0.91686 1.45041 1.33509 1.54737 0.98952 1.19017 1.10682 1.23369 0.82157 0.90485 1.24759 0.98003 0.99914 0.97656 1.69848 1.24323 1.37534 1.25283 0.86182 0.78261 0.78121 0.83144 1.21177 1.21607 1.21071 1.20296 0.90212 0.96622 0.87191 0.94403 1.21355 0.98198 0.98880 0.83527 1.19506 0.98353 0.95283 0.93758 1.21316 0.97582 0.94644 0.99448 1.21143 0.99828 0.99918 0.92340 1.21161 0.99368 0.96075 0.97411 1.21101 0.98734 0.95583 0.98328 1.20918 1.00336 1.00109 0.91510 0.91620 0.92043 0.91672 0.90210 0.91485 0.91544 0.88893 0.92216 0.90806 0.92216 0.92351 0.92277 0.96732 0.88550 0.93732 0.91566 0.91120 0.85680 0.85953 0.86169 0.86052 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 7.65 37.15 0.28 -1.11 16 2 C -0.04 -0.51 0.59 -156.81 -0.09 -0.61 16 3 C -0.16 -1.58 7.36 37.16 0.27 -1.30 16 4 C 0.51 8.31 4.72 -10.99 -0.05 8.26 16 5 O -0.54 -10.82 15.27 5.56 0.08 -10.73 16 6 N -0.58 -9.42 2.56 -179.23 -0.46 -9.88 16 7 C 0.10 1.26 3.57 -5.74 -0.02 1.24 16 8 C -0.11 -1.46 5.44 -29.25 -0.16 -1.61 16 9 C -0.09 -1.53 2.44 -92.16 -0.23 -1.76 16 10 H 0.06 1.07 8.13 -51.93 -0.42 0.65 16 11 C -0.14 -2.55 6.54 -24.74 -0.16 -2.71 16 12 C 0.16 3.76 5.76 -2.32 -0.01 3.75 16 13 N -0.60 -14.96 2.96 -163.68 -0.48 -15.45 16 14 C -0.22 -6.22 9.66 -15.06 -0.15 -6.37 16 15 H 0.08 2.11 7.83 -52.49 -0.41 1.69 16 16 C -0.01 -0.21 5.49 -17.44 -0.10 -0.31 16 17 N -0.92 -26.80 10.15 55.49 0.56 -26.23 16 18 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 C 0.16 3.37 3.43 -68.34 -0.23 3.13 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 24 C 0.10 2.09 5.42 -6.42 -0.03 2.06 16 25 C -0.07 -0.75 3.06 -104.62 -0.32 -1.07 16 26 C -0.11 -1.33 7.40 -39.58 -0.29 -1.62 16 27 C -0.11 -1.15 10.05 -39.58 -0.40 -1.55 16 28 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 29 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 30 C -0.11 -0.99 8.85 -39.58 -0.35 -1.34 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.54 7.90 -51.93 -0.41 0.13 16 33 H 0.06 0.83 8.01 -51.93 -0.42 0.42 16 34 H 0.08 0.77 4.41 -51.93 -0.23 0.54 16 35 H 0.07 0.52 7.45 -51.93 -0.39 0.13 16 36 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 37 H 0.09 1.06 2.94 -51.93 -0.15 0.91 16 38 H 0.06 0.76 6.96 -51.93 -0.36 0.40 16 39 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.06 8.09 -51.93 -0.42 0.64 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 2.60 6.09 -51.93 -0.32 2.29 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.07 1.42 7.18 -51.93 -0.37 1.05 16 47 H 0.07 1.65 7.54 -51.93 -0.39 1.26 16 48 H 0.13 1.77 6.05 -52.49 -0.32 1.45 16 49 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 50 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 51 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 52 H 0.12 0.87 7.36 -52.49 -0.39 0.49 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -31.56 384.63 -10.71 -42.27 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -8.35 Total: 2.56 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -2.83 Total: -5.74 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.38 Total: -51.56 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.56 -10.71 -42.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042344124.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.042 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds