Wall clock time and date at job start Wed Apr 1 2020 02:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 115.55933 * 2 1 4 4 C 1.38229 * 120.00378 * 88.67568 * 3 2 1 5 5 C 1.38232 * 120.00422 * 179.78398 * 4 3 2 6 6 C 1.38240 * 119.99631 * 0.44256 * 5 4 3 7 7 C 1.38232 * 120.00368 * 359.81123 * 6 5 4 8 8 C 1.38236 * 119.99587 * 359.97438 * 7 6 5 9 9 C 1.52995 * 117.49848 * 214.31019 * 2 1 3 10 10 C 1.52993 * 117.49721 * 145.68918 * 2 1 3 11 11 H 1.09000 * 117.52215 * 0.02562 * 10 2 1 12 12 C 1.50704 * 117.49616 * 214.97551 * 10 2 1 13 13 O 1.21276 * 120.00333 * 313.36072 * 12 10 2 14 14 N 1.34782 * 119.99681 * 133.36008 * 12 10 2 15 15 C 1.46500 * 119.99724 * 179.72663 * 14 12 10 16 16 C 1.52999 * 109.46155 * 59.99900 * 15 14 12 17 17 C 1.53043 * 109.45975 * 300.02537 * 15 14 12 18 18 C 1.53164 * 109.33022 * 301.36115 * 17 15 14 19 19 N 1.46928 * 108.76892 * 305.35594 * 18 17 15 20 20 C 1.36933 * 120.62917 * 233.63141 * 19 18 17 21 21 H 1.07995 * 120.00228 * 153.24792 * 20 19 18 22 22 C 1.38817 * 120.00077 * 333.25094 * 20 19 18 23 23 N 1.31621 * 119.99826 * 343.10836 * 22 20 19 24 24 Si 1.86797 * 120.00102 * 163.10716 * 22 20 19 25 25 H 1.48507 * 109.47138 * 59.99740 * 24 22 20 26 26 H 1.48498 * 109.47497 * 179.97438 * 24 22 20 27 27 H 1.48510 * 109.47175 * 300.00065 * 24 22 20 28 28 C 1.46925 * 118.73730 * 53.60466 * 19 18 17 29 29 C 1.53044 * 109.46097 * 179.97438 * 15 14 12 30 30 H 1.09000 * 109.46903 * 274.31476 * 1 2 3 31 31 H 1.09000 * 109.47201 * 34.30888 * 1 2 3 32 32 H 1.09000 * 109.47289 * 154.31530 * 1 2 3 33 33 H 1.08006 * 119.99866 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.00537 * 180.27004 * 5 4 3 35 35 H 1.08004 * 119.99723 * 179.83563 * 6 5 4 36 36 H 1.07995 * 120.00604 * 180.02562 * 7 6 5 37 37 H 1.07999 * 119.99786 * 180.02562 * 8 7 6 38 38 H 1.09003 * 117.50095 * 145.01612 * 9 2 1 39 39 H 1.09010 * 117.51655 * 359.97438 * 9 2 1 40 40 H 0.96991 * 119.99879 * 0.02562 * 14 12 10 41 41 H 1.08996 * 109.46707 * 60.00072 * 16 15 14 42 42 H 1.08998 * 109.46922 * 179.97438 * 16 15 14 43 43 H 1.08996 * 109.47323 * 299.99858 * 16 15 14 44 44 H 1.09003 * 109.49794 * 61.29836 * 17 15 14 45 45 H 1.08997 * 109.50054 * 181.39253 * 17 15 14 46 46 H 1.08999 * 109.59069 * 185.56693 * 18 17 15 47 47 H 1.09000 * 109.59114 * 65.13949 * 18 17 15 48 48 H 0.96994 * 119.99763 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.58091 * 186.60460 * 28 19 18 50 50 H 1.08999 * 109.58690 * 66.18305 * 28 19 18 51 51 H 1.08996 * 109.49770 * 178.60273 * 29 15 14 52 52 H 1.09005 * 109.49313 * 298.70330 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1802 1.3595 0.0000 4 6 2.4535 1.9950 1.1967 5 6 3.0539 3.2401 1.1968 6 6 3.3728 3.8537 -0.0001 7 6 3.0948 3.2206 -1.1971 8 6 2.4984 1.9735 -1.1970 9 6 2.2364 -1.1210 -0.7650 10 6 2.2364 -1.1210 0.7650 11 1 1.6115 -1.8589 1.2680 12 6 3.5293 -0.7811 1.4607 13 8 4.3845 -0.1498 0.8768 14 7 3.7351 -1.1787 2.7320 15 6 4.9944 -0.8534 3.4064 16 6 5.1653 0.6660 3.4618 17 6 6.1616 -1.4699 2.6318 18 6 5.9696 -2.9871 2.5483 19 7 5.8007 -3.5178 3.9080 20 6 6.5936 -4.5376 4.3623 21 1 6.7870 -4.6412 5.4198 22 6 7.1490 -5.4382 3.4637 23 7 6.6683 -5.5298 2.2419 24 14 8.5787 -6.5198 3.9885 25 1 8.1634 -7.3671 5.1353 26 1 8.9853 -7.3877 2.8542 27 1 9.7235 -5.6650 4.3937 28 6 4.7653 -2.9331 4.7710 29 6 4.9708 -1.4162 4.8294 30 1 -0.3633 0.0773 1.0248 31 1 -0.3633 0.8489 -0.5792 32 1 -0.3634 -0.9261 -0.4454 33 1 2.2006 1.5174 2.1318 34 1 3.2714 3.7347 2.1319 35 1 3.8396 4.8277 -0.0001 36 1 3.3443 3.6997 -2.1322 37 1 2.2815 1.4786 -2.1321 38 1 3.1715 -0.8752 -1.2683 39 1 1.6114 -1.8589 -1.2680 40 1 3.0513 -1.6838 3.1989 41 1 4.3339 1.1052 4.0130 42 1 6.1019 0.9081 3.9639 43 1 5.1817 1.0670 2.4484 44 1 6.1920 -1.0515 1.6258 45 1 7.0967 -1.2492 3.1465 46 1 6.8453 -3.4414 2.0849 47 1 5.0825 -3.2112 1.9559 48 1 7.0566 -6.1588 1.6139 49 1 4.8465 -3.3518 5.7740 50 1 3.7800 -3.1528 4.3598 51 1 5.9172 -1.1960 5.3234 52 1 4.1536 -0.9595 5.3877 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045506911.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:02 Heat of formation + Delta-G solvation = 35.925121 kcal Electronic energy + Delta-G solvation = -31678.158541 eV Core-core repulsion = 27836.751553 eV Total energy + Delta-G solvation = -3841.406987 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.60278 -39.22121 -37.71354 -36.30225 -34.29130 -31.91542 -30.94717 -30.82402 -30.45803 -29.82954 -28.65766 -27.38447 -24.44752 -23.88682 -23.12434 -22.34850 -22.19822 -20.93137 -20.17159 -19.32252 -18.56018 -17.44849 -16.75389 -16.36294 -15.29330 -14.90949 -14.82135 -14.69028 -14.46606 -14.25637 -14.07301 -13.76852 -13.37825 -13.34532 -13.23015 -13.19651 -13.00153 -12.81584 -12.61002 -12.27156 -12.23657 -11.81529 -11.75581 -11.54042 -11.36906 -11.12787 -11.11229 -10.98038 -10.88754 -10.68933 -10.37004 -10.34745 -10.19944 -9.98572 -9.91651 -9.61684 -9.50975 -8.98179 -8.80658 -8.64813 -8.42103 -8.39417 -6.64261 -5.74828 -3.17094 1.43635 1.50509 2.79470 3.39635 3.45847 3.46911 3.53797 3.82948 3.92881 4.51087 4.52301 4.70725 4.80262 4.96404 5.01999 5.04286 5.16040 5.18789 5.37990 5.38731 5.46211 5.48353 5.52304 5.57893 5.59515 5.65915 5.70644 5.74390 5.77330 5.93449 6.00139 6.07433 6.09210 6.09578 6.14687 6.17108 6.24875 6.44010 6.52553 6.54269 6.57592 6.60166 6.67713 6.69399 6.79472 6.88957 6.98277 7.07614 7.19883 7.48025 7.75739 7.83296 8.04748 8.48168 8.75071 9.24830 9.88636 10.44580 11.32685 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017211 B = 0.003164 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.472312 B = 8846.084078 C = 9304.089195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.066 4.066 3 C -0.032 4.032 4 C -0.094 4.094 5 C -0.117 4.117 6 C -0.124 4.124 7 C -0.122 4.122 8 C -0.105 4.105 9 C -0.131 4.131 10 C -0.178 4.178 11 H 0.118 0.882 12 C 0.546 3.454 13 O -0.528 6.528 14 N -0.709 5.709 15 C 0.187 3.813 16 C -0.159 4.159 17 C -0.150 4.150 18 C 0.178 3.822 19 N -0.591 5.591 20 C -0.253 4.253 21 H 0.064 0.936 22 C 0.002 3.998 23 N -0.901 5.901 24 Si 0.902 3.098 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.284 1.284 28 C 0.147 3.853 29 C -0.137 4.137 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.395 0.605 41 H 0.043 0.957 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.086 0.914 47 H 0.016 0.984 48 H 0.253 0.747 49 H 0.054 0.946 50 H 0.013 0.987 51 H 0.073 0.927 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.962 15.795 -3.843 20.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.067 4.067 3 C -0.032 4.032 4 C -0.112 4.112 5 C -0.135 4.135 6 C -0.142 4.142 7 C -0.140 4.140 8 C -0.123 4.123 9 C -0.168 4.168 10 C -0.199 4.199 11 H 0.136 0.864 12 C 0.332 3.668 13 O -0.405 6.405 14 N -0.360 5.360 15 C 0.102 3.898 16 C -0.217 4.217 17 C -0.190 4.190 18 C 0.052 3.948 19 N -0.314 5.314 20 C -0.383 4.383 21 H 0.082 0.918 22 C -0.196 4.196 23 N -0.546 5.546 24 Si 0.731 3.269 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.211 1.211 28 C 0.020 3.980 29 C -0.177 4.177 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.229 0.771 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.104 0.896 47 H 0.034 0.966 48 H 0.063 0.937 49 H 0.072 0.928 50 H 0.031 0.969 51 H 0.091 0.909 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.270 16.110 -4.373 20.717 hybrid contribution 0.524 -1.047 0.625 1.327 sum -11.746 15.063 -3.748 19.466 Atomic orbital electron populations 1.21351 0.90761 1.02362 1.02290 1.20157 0.94230 0.88007 1.04266 1.18805 0.97839 0.93183 0.93334 1.20817 0.98312 0.94835 0.97200 1.21010 0.99099 0.95515 0.97847 1.21054 1.00561 0.99895 0.92727 1.21026 0.99613 0.95492 0.97849 1.20854 0.98964 0.95155 0.97342 1.23177 1.02845 0.99162 0.91645 1.22483 0.98361 1.02859 0.96238 0.86393 1.19280 0.87031 0.79006 0.81527 1.90634 1.44842 1.39792 1.65192 1.46001 1.19304 1.57062 1.13588 1.20204 0.83945 0.93446 0.92193 1.22224 1.00570 0.95712 1.03179 1.22562 0.95975 1.00278 1.00198 1.20704 1.00789 0.87452 0.85822 1.44071 1.36850 1.38624 1.11844 1.19145 1.22687 1.03828 0.92650 0.91799 1.25003 1.00446 0.97407 0.96780 1.70026 1.41037 1.37872 1.05649 0.86386 0.82971 0.80102 0.77392 1.20974 1.21659 1.21073 1.20847 0.91680 0.90298 0.95207 1.22333 1.01713 0.99216 0.94436 0.91911 0.91704 0.91784 0.86959 0.86583 0.86618 0.86477 0.86425 0.87389 0.87836 0.77105 0.93778 0.92619 0.90516 0.91094 0.92525 0.89621 0.96638 0.93659 0.92772 0.96899 0.90877 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.84 37.16 0.37 -0.59 16 2 C -0.07 -0.74 2.17 -155.67 -0.34 -1.08 16 3 C -0.03 -0.40 3.73 -104.63 -0.39 -0.79 16 4 C -0.09 -1.20 7.89 -39.59 -0.31 -1.51 16 5 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 6 C -0.12 -1.42 10.05 -39.58 -0.40 -1.81 16 7 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 8 C -0.11 -1.26 9.55 -39.58 -0.38 -1.64 16 9 C -0.13 -1.58 9.21 -26.74 -0.25 -1.82 16 10 C -0.18 -2.30 5.89 -91.78 -0.54 -2.84 16 11 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 12 C 0.55 8.71 5.46 -10.98 -0.06 8.65 16 13 O -0.53 -9.82 10.85 5.56 0.06 -9.76 16 14 N -0.71 -11.11 4.10 -47.56 -0.20 -11.31 16 15 C 0.19 3.19 0.66 -131.77 -0.09 3.10 16 16 C -0.16 -2.45 8.40 37.16 0.31 -2.14 16 17 C -0.15 -3.12 4.66 -26.62 -0.12 -3.25 16 18 C 0.18 4.37 5.06 -3.72 -0.02 4.35 16 19 N -0.59 -14.67 3.00 -172.34 -0.52 -15.19 16 20 C -0.25 -6.96 9.60 -15.06 -0.14 -7.11 16 21 H 0.06 1.72 7.88 -52.49 -0.41 1.30 16 22 C 0.00 0.06 4.93 -17.43 -0.09 -0.03 16 23 N -0.90 -26.46 11.08 55.49 0.62 -25.84 16 24 Si 0.90 21.91 29.59 -169.99 -5.03 16.89 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 28 C 0.15 2.93 6.24 -3.71 -0.02 2.91 16 29 C -0.14 -2.29 4.96 -26.61 -0.13 -2.42 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 32 H 0.06 0.48 7.90 -51.93 -0.41 0.07 16 33 H 0.11 1.43 7.77 -52.48 -0.41 1.02 16 34 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.11 1.51 7.84 -51.93 -0.41 1.10 16 39 H 0.10 1.02 8.05 -51.92 -0.42 0.60 16 40 H 0.39 5.62 7.26 -40.82 -0.30 5.32 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.32 6.16 -51.93 -0.32 1.00 16 44 H 0.07 1.55 6.21 -51.93 -0.32 1.22 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.09 2.42 5.94 -51.93 -0.31 2.11 16 47 H 0.02 0.40 7.74 -51.93 -0.40 0.00 16 48 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 49 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 50 H 0.01 0.26 6.93 -51.93 -0.36 -0.10 16 51 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 52 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 401.58 15.07 6.05 6.05 Total: -1.00 -31.50 401.58 -11.09 -42.59 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -8.68 Total: 8.17 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -3.40 Total: -11.60 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.10 Total: -52.34 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.06 Total: -9.76 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.50 -11.09 -42.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045506911.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.515 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds