Wall clock time and date at job start Wed Apr 1 2020 02:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 115.55933 * 2 1 4 4 C 1.38229 * 120.00378 * 88.67568 * 3 2 1 5 5 C 1.38232 * 120.00422 * 179.78398 * 4 3 2 6 6 C 1.38240 * 119.99631 * 0.44256 * 5 4 3 7 7 C 1.38232 * 120.00368 * 359.81123 * 6 5 4 8 8 C 1.38236 * 119.99587 * 359.97438 * 7 6 5 9 9 C 1.52995 * 117.49848 * 214.31019 * 2 1 3 10 10 C 1.52993 * 117.49721 * 145.68918 * 2 1 3 11 11 H 1.09000 * 117.52215 * 0.02562 * 10 2 1 12 12 C 1.50704 * 117.49616 * 214.97551 * 10 2 1 13 13 O 1.21276 * 120.00333 * 313.36072 * 12 10 2 14 14 N 1.34782 * 119.99681 * 133.36008 * 12 10 2 15 15 C 1.46500 * 119.99724 * 179.72663 * 14 12 10 16 16 C 1.52999 * 109.46155 * 59.99900 * 15 14 12 17 17 C 1.53043 * 109.45975 * 300.02537 * 15 14 12 18 18 C 1.53164 * 109.33022 * 301.36115 * 17 15 14 19 19 N 1.46928 * 108.76892 * 305.35594 * 18 17 15 20 20 C 1.36933 * 120.62917 * 233.63141 * 19 18 17 21 21 H 1.07995 * 120.00228 * 153.24792 * 20 19 18 22 22 C 1.38817 * 120.00077 * 333.25094 * 20 19 18 23 23 N 1.31621 * 119.99826 * 343.10836 * 22 20 19 24 24 Si 1.86797 * 120.00102 * 163.10716 * 22 20 19 25 25 H 1.48507 * 109.47138 * 59.99740 * 24 22 20 26 26 H 1.48498 * 109.47497 * 179.97438 * 24 22 20 27 27 H 1.48510 * 109.47175 * 300.00065 * 24 22 20 28 28 C 1.46925 * 118.73730 * 53.60466 * 19 18 17 29 29 C 1.53044 * 109.46097 * 179.97438 * 15 14 12 30 30 H 1.09000 * 109.46903 * 274.31476 * 1 2 3 31 31 H 1.09000 * 109.47201 * 34.30888 * 1 2 3 32 32 H 1.09000 * 109.47289 * 154.31530 * 1 2 3 33 33 H 1.08006 * 119.99866 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.00537 * 180.27004 * 5 4 3 35 35 H 1.08004 * 119.99723 * 179.83563 * 6 5 4 36 36 H 1.07995 * 120.00604 * 180.02562 * 7 6 5 37 37 H 1.07999 * 119.99786 * 180.02562 * 8 7 6 38 38 H 1.09003 * 117.50095 * 145.01612 * 9 2 1 39 39 H 1.09010 * 117.51655 * 359.97438 * 9 2 1 40 40 H 0.96991 * 119.99879 * 0.02562 * 14 12 10 41 41 H 1.08996 * 109.46707 * 60.00072 * 16 15 14 42 42 H 1.08998 * 109.46922 * 179.97438 * 16 15 14 43 43 H 1.08996 * 109.47323 * 299.99858 * 16 15 14 44 44 H 1.09003 * 109.49794 * 61.29836 * 17 15 14 45 45 H 1.08997 * 109.50054 * 181.39253 * 17 15 14 46 46 H 1.08999 * 109.59069 * 185.56693 * 18 17 15 47 47 H 1.09000 * 109.59114 * 65.13949 * 18 17 15 48 48 H 0.96994 * 119.99763 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.58091 * 186.60460 * 28 19 18 50 50 H 1.08999 * 109.58690 * 66.18305 * 28 19 18 51 51 H 1.08996 * 109.49770 * 178.60273 * 29 15 14 52 52 H 1.09005 * 109.49313 * 298.70330 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1802 1.3595 0.0000 4 6 2.4535 1.9950 1.1967 5 6 3.0539 3.2401 1.1968 6 6 3.3728 3.8537 -0.0001 7 6 3.0948 3.2206 -1.1971 8 6 2.4984 1.9735 -1.1970 9 6 2.2364 -1.1210 -0.7650 10 6 2.2364 -1.1210 0.7650 11 1 1.6115 -1.8589 1.2680 12 6 3.5293 -0.7811 1.4607 13 8 4.3845 -0.1498 0.8768 14 7 3.7351 -1.1787 2.7320 15 6 4.9944 -0.8534 3.4064 16 6 5.1653 0.6660 3.4618 17 6 6.1616 -1.4699 2.6318 18 6 5.9696 -2.9871 2.5483 19 7 5.8007 -3.5178 3.9080 20 6 6.5936 -4.5376 4.3623 21 1 6.7870 -4.6412 5.4198 22 6 7.1490 -5.4382 3.4637 23 7 6.6683 -5.5298 2.2419 24 14 8.5787 -6.5198 3.9885 25 1 8.1634 -7.3671 5.1353 26 1 8.9853 -7.3877 2.8542 27 1 9.7235 -5.6650 4.3937 28 6 4.7653 -2.9331 4.7710 29 6 4.9708 -1.4162 4.8294 30 1 -0.3633 0.0773 1.0248 31 1 -0.3633 0.8489 -0.5792 32 1 -0.3634 -0.9261 -0.4454 33 1 2.2006 1.5174 2.1318 34 1 3.2714 3.7347 2.1319 35 1 3.8396 4.8277 -0.0001 36 1 3.3443 3.6997 -2.1322 37 1 2.2815 1.4786 -2.1321 38 1 3.1715 -0.8752 -1.2683 39 1 1.6114 -1.8589 -1.2680 40 1 3.0513 -1.6838 3.1989 41 1 4.3339 1.1052 4.0130 42 1 6.1019 0.9081 3.9639 43 1 5.1817 1.0670 2.4484 44 1 6.1920 -1.0515 1.6258 45 1 7.0967 -1.2492 3.1465 46 1 6.8453 -3.4414 2.0849 47 1 5.0825 -3.2112 1.9559 48 1 7.0566 -6.1588 1.6139 49 1 4.8465 -3.3518 5.7740 50 1 3.7800 -3.1528 4.3598 51 1 5.9172 -1.1960 5.3234 52 1 4.1536 -0.9595 5.3877 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045506911.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:00 Heat of formation + Delta-G solvation = 19.974722 kcal Electronic energy + Delta-G solvation = -31678.850202 eV Core-core repulsion = 27836.751553 eV Total energy + Delta-G solvation = -3842.098649 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.75680 -40.39225 -38.91989 -37.52214 -35.99329 -33.59991 -32.45744 -31.71121 -31.59293 -31.43286 -29.42973 -29.06353 -25.99701 -25.31313 -23.99653 -23.91458 -23.26819 -22.54878 -21.35779 -20.30003 -20.09707 -18.77022 -18.44571 -17.30531 -16.85609 -16.44969 -15.98180 -15.85199 -15.69984 -15.53796 -15.39878 -15.13712 -14.98007 -14.85283 -14.45494 -14.19516 -14.08490 -13.99066 -13.67110 -13.47694 -13.26116 -13.19193 -13.01263 -12.93895 -12.82086 -12.71919 -12.55589 -12.53318 -12.25405 -11.98553 -11.96429 -11.84849 -11.75030 -11.34111 -11.30937 -11.23089 -10.85981 -10.51830 -10.31213 -9.85653 -9.70046 -9.47229 -8.66941 -7.86073 -5.30655 0.54516 0.60497 1.44690 1.47977 1.54076 1.65304 2.33574 2.51026 2.88022 2.97430 3.28309 3.58649 3.70382 3.76524 3.83835 3.86789 4.09592 4.10484 4.15807 4.17285 4.21118 4.28923 4.32144 4.49713 4.62691 4.68746 4.71121 4.75414 4.78083 4.83950 4.86860 4.88575 4.94712 4.97599 4.99445 5.06440 5.10556 5.15303 5.21398 5.22303 5.24915 5.35095 5.35648 5.41192 5.52638 5.63114 5.66192 5.68938 5.73296 5.76855 5.85124 6.20865 6.38489 6.81060 7.14970 7.51864 7.88106 8.38781 9.19118 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017211 B = 0.003164 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.472312 B = 8846.084078 C = 9304.089195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.047 4.047 3 C -0.047 4.047 4 C -0.107 4.107 5 C -0.128 4.128 6 C -0.133 4.133 7 C -0.129 4.129 8 C -0.120 4.120 9 C -0.136 4.136 10 C -0.192 4.192 11 H 0.137 0.863 12 C 0.541 3.459 13 O -0.558 6.558 14 N -0.707 5.707 15 C 0.192 3.808 16 C -0.146 4.146 17 C -0.137 4.137 18 C 0.195 3.805 19 N -0.608 5.608 20 C -0.262 4.262 21 H 0.070 0.930 22 C -0.053 4.053 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.272 1.272 26 H -0.297 1.297 27 H -0.281 1.281 28 C 0.141 3.859 29 C -0.124 4.124 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.127 0.873 38 H 0.082 0.918 39 H 0.127 0.873 40 H 0.403 0.597 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.048 0.952 46 H 0.041 0.959 47 H -0.007 1.007 48 H 0.247 0.753 49 H 0.058 0.942 50 H 0.023 0.977 51 H 0.069 0.931 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.470 16.978 -2.541 22.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.047 4.047 3 C -0.047 4.047 4 C -0.125 4.125 5 C -0.146 4.146 6 C -0.151 4.151 7 C -0.147 4.147 8 C -0.138 4.138 9 C -0.173 4.173 10 C -0.213 4.213 11 H 0.154 0.846 12 C 0.329 3.671 13 O -0.437 6.437 14 N -0.358 5.358 15 C 0.107 3.893 16 C -0.204 4.204 17 C -0.177 4.177 18 C 0.069 3.931 19 N -0.331 5.331 20 C -0.392 4.392 21 H 0.087 0.913 22 C -0.248 4.248 23 N -0.581 5.581 24 Si 0.793 3.207 25 H -0.198 1.198 26 H -0.223 1.223 27 H -0.207 1.207 28 C 0.016 3.984 29 C -0.163 4.163 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.129 0.871 34 H 0.147 0.853 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.145 0.855 38 H 0.100 0.900 39 H 0.145 0.855 40 H 0.239 0.761 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.011 0.989 48 H 0.056 0.944 49 H 0.077 0.923 50 H 0.041 0.959 51 H 0.088 0.912 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.810 17.307 -3.031 22.348 hybrid contribution 1.001 -1.384 0.202 1.720 sum -12.809 15.923 -2.829 20.630 Atomic orbital electron populations 1.21387 0.88440 1.03442 1.03132 1.20248 0.95599 0.86836 1.02054 1.19044 0.98220 0.93861 0.93573 1.20900 0.99044 0.95381 0.97206 1.21275 0.98988 0.95529 0.98824 1.21370 1.00385 1.00815 0.92541 1.21353 0.99086 0.95398 0.98897 1.21093 0.99316 0.95725 0.97692 1.23222 1.02480 1.00595 0.91038 1.22540 0.97502 1.04689 0.96524 0.84558 1.19790 0.87739 0.78202 0.81385 1.90621 1.46151 1.41162 1.65787 1.45949 1.18887 1.57152 1.13784 1.20070 0.82976 0.94416 0.91879 1.22076 1.01886 0.93969 1.02516 1.22352 0.97701 0.97596 1.00083 1.20313 0.97660 0.89510 0.85622 1.44283 1.38163 1.38496 1.12170 1.19525 1.22818 1.03910 0.92945 0.91268 1.25759 1.02899 0.99221 0.96923 1.70195 1.42361 1.38819 1.06715 0.85385 0.79982 0.78418 0.76944 1.19778 1.22304 1.20720 1.21062 0.90672 0.92280 0.94385 1.22204 1.03186 0.96588 0.94346 0.91077 0.91147 0.90273 0.87146 0.85255 0.84574 0.84488 0.85531 0.89952 0.85459 0.76092 0.91367 0.92042 0.92383 0.92627 0.93351 0.94029 0.98901 0.94407 0.92347 0.95891 0.91226 0.88677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.84 71.98 0.71 -0.87 16 2 C -0.05 -0.99 2.17 -52.93 -0.11 -1.10 16 3 C -0.05 -1.15 3.73 -19.87 -0.07 -1.22 16 4 C -0.11 -2.66 7.89 22.27 0.18 -2.48 16 5 C -0.13 -2.96 10.05 22.27 0.22 -2.73 16 6 C -0.13 -2.87 10.05 22.27 0.22 -2.65 16 7 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 8 C -0.12 -2.82 9.55 22.27 0.21 -2.61 16 9 C -0.14 -3.20 9.21 30.59 0.28 -2.92 16 10 C -0.19 -4.76 5.89 -11.54 -0.07 -4.83 16 11 H 0.14 2.83 8.14 -2.39 -0.02 2.81 16 12 C 0.54 17.15 5.46 87.66 0.48 17.62 16 13 O -0.56 -21.16 10.85 -3.02 -0.03 -21.19 16 14 N -0.71 -21.38 4.10 -422.79 -1.73 -23.11 16 15 C 0.19 6.32 0.66 3.63 0.00 6.32 16 16 C -0.15 -4.25 8.40 71.98 0.60 -3.64 16 17 C -0.14 -5.83 4.66 30.66 0.14 -5.68 16 18 C 0.19 9.91 5.06 86.35 0.44 10.35 16 19 N -0.61 -30.33 3.00 -699.15 -2.10 -32.42 16 20 C -0.26 -14.46 9.60 84.04 0.81 -13.65 16 21 H 0.07 3.68 7.88 -2.91 -0.02 3.65 16 22 C -0.05 -3.01 4.93 84.86 0.42 -2.59 16 23 N -0.93 -56.72 11.08 21.65 0.24 -56.48 16 24 Si 0.96 45.70 29.59 68.60 2.03 47.73 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 27 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 28 C 0.14 5.42 6.24 86.36 0.54 5.96 16 29 C -0.12 -3.80 4.96 30.67 0.15 -3.65 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 0.98 8.08 -2.39 -0.02 0.96 16 32 H 0.08 0.94 7.90 -2.39 -0.02 0.92 16 33 H 0.11 2.68 7.77 -2.91 -0.02 2.66 16 34 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 36 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 37 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.08 2.38 7.84 -2.39 -0.02 2.36 16 39 H 0.13 2.32 8.05 -2.38 -0.02 2.30 16 40 H 0.40 10.72 7.26 -92.71 -0.67 10.04 16 41 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.06 1.95 6.16 -2.39 -0.01 1.93 16 44 H 0.06 2.52 6.21 -2.39 -0.01 2.51 16 45 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.04 2.47 5.94 -2.39 -0.01 2.45 16 47 H -0.01 -0.38 7.74 -2.39 -0.02 -0.40 16 48 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 49 H 0.06 2.18 7.93 -2.39 -0.02 2.17 16 50 H 0.02 0.85 6.93 -2.39 -0.02 0.84 16 51 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 52 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 Total: -1.00 -70.51 401.58 4.01 -66.50 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: 0.23 Total: 31.96 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 5.38 Total: -12.98 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -3.59 Total: -112.02 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.03 Total: -21.19 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -70.51 4.01 -66.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045506911.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.475 kcal (2) G-P(sol) polarization free energy of solvation -70.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds