Wall clock time and date at job start Wed Apr 1 2020 02:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.46180 * 2 1 4 4 C 1.34780 * 119.99850 * 59.99804 * 3 2 1 5 5 O 1.21283 * 119.99989 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99850 * 179.97438 * 4 3 2 7 7 H 1.08994 * 109.67871 * 59.48604 * 6 4 3 8 8 C 1.53329 * 109.68173 * 180.02562 * 6 4 3 9 9 C 1.52730 * 108.38655 * 189.60573 * 8 6 4 10 10 C 1.50627 * 110.58696 * 308.91022 * 9 8 6 11 11 C 1.38917 * 117.74837 * 197.47972 * 10 9 8 12 12 C 1.37927 * 120.54817 * 180.28406 * 11 10 9 13 13 C 1.38265 * 119.76881 * 0.09664 * 12 11 10 14 14 C 1.37934 * 119.77401 * 0.17489 * 13 12 11 15 15 C 1.37665 * 122.56802 * 17.70584 * 10 9 8 16 16 C 1.50628 * 122.56339 * 359.37845 * 15 10 9 17 17 C 1.53038 * 109.45925 * 119.97381 * 2 1 3 18 18 C 1.53167 * 109.33155 * 181.38369 * 17 2 1 19 19 N 1.46922 * 108.76671 * 305.36048 * 18 17 2 20 20 C 1.36944 * 120.62937 * 233.62728 * 19 18 17 21 21 H 1.07997 * 120.00084 * 151.80191 * 20 19 18 22 22 C 1.38814 * 119.99685 * 331.80324 * 20 19 18 23 23 N 1.31619 * 120.00041 * 343.09526 * 22 20 19 24 24 Si 1.86801 * 119.99909 * 163.08677 * 22 20 19 25 25 H 1.48510 * 109.46596 * 60.00453 * 24 22 20 26 26 H 1.48501 * 109.47034 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47352 * 300.00628 * 24 22 20 28 28 C 1.46925 * 118.74369 * 53.60168 * 19 18 17 29 29 C 1.53044 * 109.46234 * 240.02586 * 2 1 3 30 30 H 1.09003 * 109.46977 * 60.00085 * 1 2 3 31 31 H 1.09000 * 109.47057 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47097 * 300.00107 * 1 2 3 33 33 H 0.96997 * 120.00166 * 239.99659 * 3 2 1 34 34 H 1.08995 * 109.68488 * 69.88088 * 8 6 4 35 35 H 1.09007 * 109.68148 * 309.33146 * 8 6 4 36 36 H 1.09001 * 109.25778 * 188.62305 * 9 8 6 37 37 H 1.09007 * 109.21749 * 69.17575 * 9 8 6 38 38 H 1.07994 * 119.72615 * 0.30868 * 11 10 9 39 39 H 1.07998 * 120.11750 * 180.11235 * 12 11 10 40 40 H 1.08005 * 120.11381 * 179.89792 * 13 12 11 41 41 H 1.07994 * 119.73241 * 179.65340 * 14 13 12 42 42 H 1.09003 * 109.25104 * 257.42476 * 16 15 10 43 43 H 1.08999 * 109.22144 * 137.97599 * 16 15 10 44 44 H 1.09003 * 109.50121 * 301.32630 * 17 2 1 45 45 H 1.09007 * 109.49846 * 61.42311 * 17 2 1 46 46 H 1.08993 * 109.59610 * 185.56956 * 18 17 2 47 47 H 1.09008 * 109.70303 * 65.20939 * 18 17 2 48 48 H 0.97002 * 119.99701 * 180.02562 * 23 22 20 49 49 H 1.08998 * 109.58937 * 186.60373 * 28 19 18 50 50 H 1.08999 * 109.70214 * 66.24839 * 28 19 18 51 51 H 1.08996 * 109.49855 * 298.58301 * 29 2 1 52 52 H 1.09002 * 109.49513 * 58.64585 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6923 2.2111 1.0108 5 8 0.9955 1.8141 1.9207 6 6 2.1949 3.6318 1.0111 7 1 1.8413 4.1464 0.1177 8 6 1.6867 4.3591 2.2617 9 6 2.0051 5.8458 2.1171 10 6 3.4561 6.0449 1.7653 11 6 4.0008 7.3083 1.9575 12 6 5.3220 7.5565 1.6491 13 6 6.1112 6.5405 1.1424 14 6 5.5708 5.2868 0.9455 15 6 4.2428 5.0325 1.2639 16 6 3.7220 3.6373 1.0380 17 6 2.0398 -0.7209 1.2500 18 6 3.5711 -0.6890 1.2646 19 7 4.0676 -1.2493 0.0004 20 6 4.9753 -2.2747 0.0005 21 1 5.0026 -2.9719 -0.8239 22 6 5.8604 -2.4180 1.0603 23 7 6.0654 -1.4144 1.8867 24 14 6.7601 -4.0354 1.3136 25 1 7.5838 -4.3365 0.1150 26 1 7.6404 -3.9308 2.5049 27 1 5.7721 -5.1242 1.5215 28 6 3.5714 -0.6891 -1.2640 29 6 2.0399 -0.7209 -1.2500 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.5757 1.6986 -0.7274 34 1 2.1850 3.9612 3.1457 35 1 0.6093 4.2216 2.3539 36 1 1.7906 6.3525 3.0580 37 1 1.3826 6.2711 1.3298 38 1 3.3847 8.1027 2.3522 39 1 5.7387 8.5408 1.8030 40 1 7.1460 6.7291 0.8974 41 1 6.1863 4.4952 0.5444 42 1 4.0696 2.9892 1.8425 43 1 4.0995 3.2630 0.0864 44 1 1.6574 -0.2209 2.1398 45 1 1.6976 -1.7558 1.2382 46 1 3.9412 -1.2850 2.0987 47 1 3.9163 0.3397 1.3689 48 1 6.6842 -1.5145 2.6270 49 1 3.9417 -1.2851 -2.0981 50 1 3.9145 0.3401 -1.3696 51 1 1.6977 -1.7557 -1.2382 52 1 1.6570 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045574073.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:58 Heat of formation + Delta-G solvation = -24.088334 kcal Electronic energy + Delta-G solvation = -31376.118694 eV Core-core repulsion = 27532.109328 eV Total energy + Delta-G solvation = -3844.009366 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -41.75701 -40.65315 -38.95979 -36.72609 -36.03233 -33.89358 -33.36242 -32.40443 -31.59012 -31.08163 -29.69001 -29.05515 -25.95585 -25.37018 -24.18068 -23.89623 -23.04405 -22.67479 -21.69443 -20.21515 -20.11551 -18.77164 -18.18722 -17.29108 -16.85100 -16.72845 -16.25664 -15.93682 -15.71895 -15.50813 -15.32054 -15.19416 -14.90447 -14.84004 -14.74180 -14.54189 -14.13242 -13.94640 -13.81745 -13.52525 -13.25457 -13.19585 -13.06756 -12.84396 -12.80811 -12.56679 -12.54064 -12.39308 -12.32214 -12.26180 -11.96978 -11.95818 -11.75933 -11.69755 -11.34873 -11.29351 -11.23882 -10.52168 -10.33102 -9.89018 -9.63376 -9.43596 -8.64962 -7.86566 -5.31777 0.47693 0.49726 1.44390 1.47524 1.53528 1.75206 2.33749 2.50775 2.86426 3.28425 3.51769 3.65862 3.73037 3.81887 3.90193 4.05599 4.06848 4.10571 4.16247 4.17881 4.24697 4.37346 4.42889 4.50050 4.57392 4.58874 4.68890 4.72004 4.74288 4.82582 4.88922 4.90394 4.92673 4.96181 5.01331 5.06079 5.12015 5.15581 5.16442 5.23494 5.28363 5.35772 5.36539 5.39895 5.51281 5.62869 5.63767 5.65682 5.71214 5.77970 5.81752 6.16534 6.38854 6.73149 7.15381 7.40968 7.88172 8.39424 9.18689 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010829 B = 0.003629 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.923427 B = 7714.380938 C = 9444.912343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.186 3.814 3 N -0.706 5.706 4 C 0.518 3.482 5 O -0.570 6.570 6 C -0.095 4.095 7 H 0.122 0.878 8 C -0.095 4.095 9 C -0.072 4.072 10 C -0.087 4.087 11 C -0.125 4.125 12 C -0.126 4.126 13 C -0.131 4.131 14 C -0.136 4.136 15 C -0.087 4.087 16 C -0.063 4.063 17 C -0.139 4.139 18 C 0.195 3.805 19 N -0.606 5.606 20 C -0.263 4.263 21 H 0.068 0.932 22 C -0.049 4.049 23 N -0.933 5.933 24 Si 0.962 3.038 25 H -0.272 1.272 26 H -0.297 1.297 27 H -0.281 1.281 28 C 0.141 3.859 29 C -0.124 4.124 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.405 0.595 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.136 0.864 41 H 0.115 0.885 42 H 0.049 0.951 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.037 0.963 47 H -0.004 1.004 48 H 0.247 0.753 49 H 0.058 0.942 50 H 0.022 0.978 51 H 0.071 0.929 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.645 18.072 -5.366 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.100 3.900 3 N -0.357 5.357 4 C 0.305 3.695 5 O -0.450 6.450 6 C -0.116 4.116 7 H 0.140 0.860 8 C -0.133 4.133 9 C -0.109 4.109 10 C -0.087 4.087 11 C -0.142 4.142 12 C -0.144 4.144 13 C -0.149 4.149 14 C -0.154 4.154 15 C -0.087 4.087 16 C -0.100 4.100 17 C -0.179 4.179 18 C 0.069 3.931 19 N -0.330 5.330 20 C -0.393 4.393 21 H 0.086 0.914 22 C -0.245 4.245 23 N -0.579 5.579 24 Si 0.790 3.210 25 H -0.198 1.198 26 H -0.224 1.224 27 H -0.207 1.207 28 C 0.016 3.984 29 C -0.163 4.163 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.241 0.759 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.163 0.837 39 H 0.163 0.837 40 H 0.154 0.846 41 H 0.133 0.867 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.014 0.986 48 H 0.056 0.944 49 H 0.076 0.924 50 H 0.040 0.960 51 H 0.089 0.911 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.020 17.768 -4.624 20.457 hybrid contribution 1.437 -1.183 0.350 1.894 sum -7.584 16.586 -4.274 18.731 Atomic orbital electron populations 1.22099 0.93590 1.02440 1.02614 1.20163 0.93845 0.80748 0.95205 1.46072 1.52889 1.11455 1.25260 1.20888 0.79357 0.88139 0.81126 1.90600 1.39899 1.77815 1.36683 1.21302 0.95733 0.92007 1.02557 0.85991 1.21307 1.01633 0.94766 0.95567 1.20510 0.91500 0.95510 1.03374 1.19888 0.96620 0.93337 0.98807 1.21446 0.95981 0.96422 1.00394 1.21400 0.94185 0.99930 0.98843 1.21322 1.00787 0.92942 0.99834 1.21339 0.94973 0.97983 1.01104 1.19574 0.94256 0.94681 1.00178 1.20273 0.93634 0.93923 1.02196 1.22366 0.97823 0.99115 0.98553 1.20294 0.89471 0.94566 0.88756 1.44248 1.48202 1.39564 1.00965 1.19493 1.09539 1.03691 1.06581 0.91401 1.25756 0.98547 1.00097 1.00058 1.70191 1.38291 1.30824 1.18596 0.85426 0.78122 0.80344 0.77085 1.19778 1.22375 1.20687 1.21056 0.92733 0.96280 0.88352 1.22206 0.96753 1.00884 0.96475 0.91048 0.91612 0.92516 0.75892 0.93538 0.90327 0.88989 0.88493 0.83716 0.83667 0.84612 0.86713 0.93205 0.90156 0.92524 0.93052 0.94436 0.98616 0.94437 0.92396 0.95981 0.91062 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 8.40 71.98 0.60 -3.58 16 2 C 0.19 6.00 0.66 3.63 0.00 6.00 16 3 N -0.71 -20.89 4.02 -422.80 -1.70 -22.59 16 4 C 0.52 16.11 6.55 87.66 0.57 16.69 16 5 O -0.57 -21.51 12.08 -3.04 -0.04 -21.55 16 6 C -0.09 -2.34 2.55 -11.52 -0.03 -2.36 16 7 H 0.12 2.34 8.10 -2.39 -0.02 2.32 16 8 C -0.09 -2.24 4.71 30.61 0.14 -2.09 16 9 C -0.07 -1.28 5.67 29.74 0.17 -1.11 16 10 C -0.09 -1.85 5.74 -19.86 -0.11 -1.97 16 11 C -0.12 -2.25 9.61 22.36 0.21 -2.03 16 12 C -0.13 -2.25 10.05 22.20 0.22 -2.02 16 13 C -0.13 -2.73 10.05 22.20 0.22 -2.51 16 14 C -0.14 -3.42 9.61 22.36 0.21 -3.20 16 15 C -0.09 -2.21 5.74 -19.86 -0.11 -2.32 16 16 C -0.06 -1.73 4.85 29.74 0.14 -1.59 16 17 C -0.14 -5.77 4.66 30.66 0.14 -5.63 16 18 C 0.20 9.78 5.04 86.36 0.44 10.22 16 19 N -0.61 -29.91 2.99 -699.16 -2.09 -32.01 16 20 C -0.26 -14.42 9.58 84.03 0.81 -13.61 16 21 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 22 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 23 N -0.93 -56.38 11.20 21.65 0.24 -56.14 16 24 Si 0.96 45.56 29.59 68.60 2.03 47.59 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 26 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 27 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 28 C 0.14 5.35 6.24 86.36 0.54 5.89 16 29 C -0.12 -3.72 4.96 30.67 0.15 -3.57 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 1.82 6.17 -2.39 -0.01 1.81 16 33 H 0.40 10.49 6.96 -92.71 -0.64 9.84 16 34 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 35 H 0.08 1.84 7.82 -2.38 -0.02 1.82 16 36 H 0.09 1.37 8.13 -2.39 -0.02 1.35 16 37 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.15 1.80 8.05 -2.91 -0.02 1.77 16 39 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 40 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 41 H 0.11 2.95 8.05 -2.91 -0.02 2.93 16 42 H 0.05 1.73 8.11 -2.39 -0.02 1.72 16 43 H 0.08 2.13 7.87 -2.39 -0.02 2.11 16 44 H 0.06 2.51 6.20 -2.39 -0.01 2.50 16 45 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 46 H 0.04 2.20 6.06 -2.39 -0.01 2.19 16 47 H 0.00 -0.23 7.75 -2.38 -0.02 -0.24 16 48 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 49 H 0.06 2.15 7.93 -2.39 -0.02 2.13 16 50 H 0.02 0.81 6.94 -2.39 -0.02 0.79 16 51 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 52 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -69.85 394.16 3.45 -66.40 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: 0.26 Total: 29.46 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 4.75 Total: -11.16 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -3.55 Total: -110.74 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.04 Total: -21.55 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -69.85 3.45 -66.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045574073.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.311 kcal (2) G-P(sol) polarization free energy of solvation -69.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds