Wall clock time and date at job start Wed Apr 1 2020 02:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.46225 * 2 1 4 4 C 1.34778 * 119.99545 * 60.02878 * 3 2 1 5 5 O 1.21281 * 120.00103 * 359.72378 * 4 3 2 6 6 C 1.50697 * 119.99945 * 179.72487 * 4 3 2 7 7 H 1.09007 * 109.68262 * 300.51923 * 6 4 3 8 8 C 1.53331 * 109.68715 * 180.02562 * 6 4 3 9 9 C 1.52728 * 108.40100 * 170.41249 * 8 6 4 10 10 C 1.50630 * 110.59767 * 51.04897 * 9 8 6 11 11 C 1.38916 * 117.75182 * 162.32909 * 10 9 8 12 12 C 1.37932 * 120.54079 * 179.74856 * 11 10 9 13 13 C 1.38267 * 119.77855 * 359.96800 * 12 11 10 14 14 C 1.37937 * 119.76323 * 0.13353 * 13 12 11 15 15 C 1.37665 * 122.56631 * 342.28408 * 10 9 8 16 16 C 1.50631 * 122.56393 * 0.71723 * 15 10 9 17 17 C 1.53045 * 109.44917 * 119.97134 * 2 1 3 18 18 C 1.53194 * 109.31159 * 181.37796 * 17 2 1 19 19 N 1.46922 * 108.77591 * 305.36197 * 18 17 2 20 20 C 1.36939 * 120.63321 * 233.59087 * 19 18 17 21 21 H 1.07998 * 119.99838 * 27.68388 * 20 19 18 22 22 C 1.38803 * 120.00121 * 207.69409 * 20 19 18 23 23 N 1.31621 * 120.00213 * 17.35954 * 22 20 19 24 24 Si 1.86798 * 120.00057 * 197.36414 * 22 20 19 25 25 H 1.48501 * 109.47322 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47392 * 119.99939 * 24 22 20 27 27 H 1.48509 * 109.47203 * 239.99603 * 24 22 20 28 28 C 1.46931 * 118.73804 * 53.60900 * 19 18 17 29 29 C 1.53040 * 109.46119 * 240.02783 * 2 1 3 30 30 H 1.08996 * 109.47243 * 59.99993 * 1 2 3 31 31 H 1.09003 * 109.47238 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46977 * 299.99302 * 1 2 3 33 33 H 0.96996 * 120.00283 * 239.75470 * 3 2 1 34 34 H 1.08997 * 109.67695 * 290.14269 * 8 6 4 35 35 H 1.09001 * 109.67557 * 50.68317 * 8 6 4 36 36 H 1.08991 * 109.25174 * 171.34075 * 9 8 6 37 37 H 1.09008 * 109.24934 * 290.76396 * 9 8 6 38 38 H 1.07994 * 119.72850 * 359.71205 * 11 10 9 39 39 H 1.07997 * 120.11443 * 179.97438 * 12 11 10 40 40 H 1.07994 * 120.11468 * 180.10375 * 13 12 11 41 41 H 1.08006 * 119.72248 * 180.02562 * 14 13 12 42 42 H 1.09000 * 109.26045 * 221.88731 * 16 15 10 43 43 H 1.08994 * 109.24718 * 102.45159 * 16 15 10 44 44 H 1.09001 * 109.49613 * 301.32750 * 17 2 1 45 45 H 1.08998 * 109.49837 * 61.42197 * 17 2 1 46 46 H 1.09000 * 109.58322 * 185.57670 * 18 17 2 47 47 H 1.08998 * 109.58869 * 65.15246 * 18 17 2 48 48 H 0.96999 * 120.00270 * 179.97438 * 23 22 20 49 49 H 1.09005 * 109.58452 * 186.60801 * 28 19 18 50 50 H 1.08997 * 109.58593 * 66.17935 * 28 19 18 51 51 H 1.09005 * 109.49987 * 298.58535 * 29 2 1 52 52 H 1.09001 * 109.49614 * 58.67401 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6928 2.2109 1.0112 5 8 0.9919 1.8153 1.9185 6 6 2.2000 3.6299 1.0144 7 1 3.2900 3.6302 1.0078 8 6 1.6915 4.3574 2.2647 9 6 2.4085 5.7021 2.3652 10 6 2.3119 6.4528 1.0628 11 6 2.5695 7.8177 1.0823 12 6 2.5025 8.5602 -0.0782 13 6 2.1770 7.9419 -1.2713 14 6 1.9187 6.5871 -1.2922 15 6 1.9829 5.8380 -0.1242 16 6 1.6766 4.3661 -0.2172 17 6 2.0396 -0.7209 1.2501 18 6 3.5712 -0.6890 1.2644 19 7 4.0676 -1.2494 0.0003 20 6 4.9760 -2.2742 0.0003 21 1 5.0090 -2.9664 0.8286 22 6 5.8543 -2.4231 -1.0641 23 7 6.0604 -1.4212 -1.8925 24 14 6.7439 -4.0455 -1.3210 25 1 6.3420 -5.0038 -0.2602 26 1 6.3869 -4.6005 -2.6513 27 1 8.2105 -3.8216 -1.2555 28 6 3.5714 -0.6890 -1.2641 29 6 2.0399 -0.7209 -1.2500 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 2.5787 1.6976 -0.7256 34 1 0.6167 4.5196 2.1833 35 1 1.9069 3.7594 3.1503 36 1 1.9507 6.2952 3.1567 37 1 3.4582 5.5326 2.6053 38 1 2.8238 8.3015 2.0137 39 1 2.7038 9.6210 -0.0551 40 1 2.1246 8.5177 -2.1834 41 1 1.6649 6.1046 -2.2246 42 1 2.1501 3.9560 -1.1093 43 1 0.5978 4.2273 -0.2875 44 1 1.6570 -0.2208 2.1399 45 1 1.6973 -1.7557 1.2383 46 1 3.9412 -1.2851 2.0986 47 1 3.9143 0.3404 1.3676 48 1 6.6745 -1.5252 -2.6361 49 1 3.9416 -1.2851 -2.0982 50 1 3.9145 0.3404 -1.3671 51 1 1.6976 -1.7557 -1.2383 52 1 1.6574 -0.2208 -2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045574075.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:12 Heat of formation + Delta-G solvation = -23.597607 kcal Electronic energy + Delta-G solvation = -30985.071674 eV Core-core repulsion = 27141.083587 eV Total energy + Delta-G solvation = -3843.988086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 8.11 seconds Orbital eigenvalues (eV) -41.75191 -40.65079 -38.96620 -36.71344 -36.01734 -33.91788 -33.35821 -32.37684 -31.62698 -31.04940 -29.67363 -29.06646 -25.94789 -25.35158 -24.18157 -23.90454 -23.02894 -22.66779 -21.69114 -20.23905 -20.08793 -18.78570 -18.14262 -17.26983 -16.85225 -16.74457 -16.29668 -15.94201 -15.68547 -15.50987 -15.36066 -15.17844 -14.86919 -14.79868 -14.77744 -14.52302 -14.08532 -14.00549 -13.79442 -13.52987 -13.30693 -13.12907 -13.04309 -12.88386 -12.84023 -12.61422 -12.54089 -12.38918 -12.30417 -12.13539 -11.98470 -11.94522 -11.77094 -11.68483 -11.36269 -11.28861 -11.24730 -10.54073 -10.34430 -9.88008 -9.61231 -9.42017 -8.65502 -7.87420 -5.30988 0.49550 0.51671 1.45319 1.48179 1.57941 1.75528 2.31694 2.51392 2.88326 3.27224 3.51622 3.66535 3.71325 3.83227 3.89934 4.04865 4.07186 4.10635 4.16377 4.19413 4.26745 4.38716 4.43975 4.49532 4.57167 4.62939 4.64834 4.74203 4.75656 4.82210 4.89649 4.91287 4.91548 4.92905 4.97162 5.00901 5.12702 5.16971 5.18683 5.23295 5.28288 5.30612 5.35293 5.39029 5.49946 5.63960 5.64610 5.67313 5.72780 5.78774 5.79968 6.17945 6.39769 6.72280 7.16530 7.38405 7.86836 8.38502 9.18364 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014401 B = 0.002838 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.843562 B = 9863.761974 C =10636.832439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.187 3.813 3 N -0.707 5.707 4 C 0.521 3.479 5 O -0.567 6.567 6 C -0.102 4.102 7 H 0.097 0.903 8 C -0.091 4.091 9 C -0.077 4.077 10 C -0.089 4.089 11 C -0.130 4.130 12 C -0.129 4.129 13 C -0.131 4.131 14 C -0.130 4.130 15 C -0.089 4.089 16 C -0.062 4.062 17 C -0.131 4.131 18 C 0.154 3.846 19 N -0.606 5.606 20 C -0.263 4.263 21 H 0.059 0.941 22 C -0.045 4.045 23 N -0.928 5.928 24 Si 0.963 3.037 25 H -0.272 1.272 26 H -0.287 1.287 27 H -0.293 1.293 28 C 0.180 3.820 29 C -0.132 4.132 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.404 0.596 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.132 0.868 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.039 0.961 47 H 0.008 0.992 48 H 0.250 0.750 49 H 0.056 0.944 50 H 0.008 0.992 51 H 0.066 0.934 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.950 18.437 1.853 21.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.101 3.899 3 N -0.358 5.358 4 C 0.309 3.691 5 O -0.447 6.447 6 C -0.123 4.123 7 H 0.115 0.885 8 C -0.129 4.129 9 C -0.114 4.114 10 C -0.089 4.089 11 C -0.148 4.148 12 C -0.147 4.147 13 C -0.149 4.149 14 C -0.147 4.147 15 C -0.089 4.089 16 C -0.100 4.100 17 C -0.170 4.170 18 C 0.028 3.972 19 N -0.330 5.330 20 C -0.393 4.393 21 H 0.076 0.924 22 C -0.241 4.241 23 N -0.574 5.574 24 Si 0.791 3.209 25 H -0.196 1.196 26 H -0.214 1.214 27 H -0.220 1.220 28 C 0.054 3.946 29 C -0.171 4.171 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.239 0.761 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.154 0.846 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.150 0.850 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.058 0.942 47 H 0.026 0.974 48 H 0.059 0.941 49 H 0.074 0.926 50 H 0.026 0.974 51 H 0.084 0.916 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.344 18.130 2.369 21.517 hybrid contribution 1.193 -0.867 -0.585 1.587 sum -10.151 17.263 1.784 20.105 Atomic orbital electron populations 1.22099 0.93598 1.02468 1.02557 1.20150 0.93801 0.80754 0.95189 1.46161 1.52713 1.11566 1.25357 1.20792 0.79478 0.87787 0.81079 1.90591 1.39383 1.77859 1.36883 1.21311 1.02080 0.90524 0.98424 0.88451 1.21275 1.00179 0.95226 0.96242 1.20502 1.01562 0.94833 0.94477 1.19851 0.99714 0.94511 0.94838 1.21412 1.00567 0.93268 0.99505 1.21388 0.99768 1.00890 0.92627 1.21363 0.99763 0.94751 0.99019 1.21382 1.00611 0.94791 0.97964 1.19643 1.00620 0.95222 0.93406 1.20343 1.01715 0.90994 0.96906 1.22234 0.96459 0.99800 0.98545 1.20833 0.92847 0.95102 0.88412 1.44278 1.48186 1.39582 1.00934 1.19474 1.10213 1.03602 1.06037 0.92356 1.25673 0.98232 1.00226 0.99941 1.70153 1.38498 1.30428 1.18361 0.85285 0.77656 0.80359 0.77586 1.19643 1.21399 1.22012 1.20585 0.89665 0.95572 0.88777 1.22326 0.97837 1.00413 0.96514 0.91723 0.91543 0.91968 0.76070 0.91727 0.91409 0.88982 0.90114 0.84567 0.84121 0.84274 0.85017 0.89456 0.90202 0.91049 0.92244 0.94230 0.97416 0.94065 0.92590 0.97403 0.91559 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.18 8.40 71.98 0.60 -3.57 16 2 C 0.19 6.00 0.66 3.63 0.00 6.00 16 3 N -0.71 -20.86 4.02 -422.80 -1.70 -22.56 16 4 C 0.52 15.24 6.55 87.66 0.57 15.81 16 5 O -0.57 -19.59 12.07 -3.03 -0.04 -19.63 16 6 C -0.10 -2.40 2.55 -11.52 -0.03 -2.43 16 7 H 0.10 2.34 8.10 -2.38 -0.02 2.32 16 8 C -0.09 -2.01 4.71 30.61 0.14 -1.87 16 9 C -0.08 -1.38 5.67 29.74 0.17 -1.22 16 10 C -0.09 -1.74 5.74 -19.86 -0.11 -1.86 16 11 C -0.13 -2.20 9.61 22.36 0.21 -1.99 16 12 C -0.13 -2.01 10.05 22.20 0.22 -1.79 16 13 C -0.13 -2.13 10.05 22.21 0.22 -1.91 16 14 C -0.13 -2.38 9.61 22.36 0.21 -2.16 16 15 C -0.09 -1.81 5.74 -19.86 -0.11 -1.92 16 16 C -0.06 -1.26 4.85 29.74 0.14 -1.11 16 17 C -0.13 -4.83 4.67 30.67 0.14 -4.69 16 18 C 0.15 6.70 6.26 86.36 0.54 7.24 16 19 N -0.61 -30.02 2.99 -699.11 -2.09 -32.12 16 20 C -0.26 -14.48 9.58 84.03 0.81 -13.67 16 21 H 0.06 3.22 7.89 -2.91 -0.02 3.19 16 22 C -0.04 -2.47 4.91 84.86 0.42 -2.06 16 23 N -0.93 -53.17 11.19 21.65 0.24 -52.92 16 24 Si 0.96 44.57 29.59 68.60 2.03 46.60 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 26 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 27 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 28 C 0.18 8.06 5.04 86.36 0.43 8.50 16 29 C -0.13 -4.54 4.96 30.67 0.15 -4.39 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.92 6.16 -2.39 -0.01 1.90 16 33 H 0.40 11.31 6.95 -92.71 -0.64 10.67 16 34 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 35 H 0.07 1.64 7.82 -2.39 -0.02 1.63 16 36 H 0.09 1.36 8.12 -2.39 -0.02 1.34 16 37 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.14 1.75 8.05 -2.91 -0.02 1.72 16 39 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 40 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 41 H 0.13 2.01 8.05 -2.91 -0.02 1.99 16 42 H 0.09 1.62 7.87 -2.39 -0.02 1.60 16 43 H 0.08 1.61 8.11 -2.39 -0.02 1.59 16 44 H 0.07 2.69 6.21 -2.39 -0.01 2.67 16 45 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.04 1.76 7.93 -2.39 -0.02 1.74 16 47 H 0.01 0.35 7.74 -2.39 -0.02 0.33 16 48 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 49 H 0.06 2.90 6.04 -2.38 -0.01 2.88 16 50 H 0.01 0.36 6.93 -2.39 -0.02 0.35 16 51 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 52 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -64.78 394.12 3.45 -61.33 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 0.26 Total: 28.37 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 4.75 Total: -9.08 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -3.55 Total: -107.60 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.04 Total: -19.63 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -64.78 3.45 -61.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045574075.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.730 kcal (2) G-P(sol) polarization free energy of solvation -64.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.11 seconds