Wall clock time and date at job start Wed Apr 1 2020 01:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38232 * 119.99726 * 2 1 4 4 C 1.38241 * 119.99990 * 180.24947 * 3 2 1 5 5 C 1.38238 * 119.99720 * 359.79405 * 4 3 2 6 6 C 1.38234 * 120.00071 * 359.95221 * 5 4 3 7 7 C 1.50702 * 119.99912 * 180.02562 * 6 5 4 8 8 C 1.38231 * 120.00291 * 179.76591 * 2 1 3 9 9 C 1.50706 * 119.99884 * 0.02562 * 8 2 1 10 10 C 1.50699 * 109.46817 * 269.72397 * 9 8 2 11 11 O 1.21282 * 120.00041 * 0.02562 * 10 9 8 12 12 N 1.35002 * 120.00125 * 180.02562 * 10 9 8 13 13 C 1.44768 * 119.95853 * 359.97438 * 12 10 9 14 14 C 1.51401 * 113.17390 * 267.18658 * 13 12 10 15 15 C 1.51239 * 114.15408 * 295.17476 * 14 13 12 16 16 H 1.09653 * 110.76493 * 179.29842 * 15 14 13 17 17 C 1.54123 * 108.48380 * 301.36643 * 15 14 13 18 18 C 1.54007 * 104.73905 * 92.08081 * 17 15 14 19 19 C 1.52058 * 105.52991 * 12.09070 * 18 17 15 20 20 H 1.09408 * 108.26883 * 122.66035 * 19 18 17 21 21 C 1.49240 * 119.97668 * 179.50352 * 12 10 9 22 22 N 1.47722 * 109.55387 * 4.85305 * 19 18 17 23 23 C 1.37125 * 127.15078 * 159.15563 * 22 19 18 24 24 H 1.08001 * 119.99996 * 180.36629 * 23 22 19 25 25 C 1.38811 * 119.99513 * 0.37544 * 23 22 19 26 26 N 1.31610 * 120.00419 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99577 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47218 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47192 * 119.99728 * 27 25 23 30 30 H 1.48494 * 109.47479 * 239.99801 * 27 25 23 31 31 H 1.09000 * 109.47043 * 270.22709 * 1 2 3 32 32 H 1.08996 * 109.47682 * 30.23373 * 1 2 3 33 33 H 1.09004 * 109.47050 * 150.23904 * 1 2 3 34 34 H 1.08002 * 120.00590 * 0.02562 * 3 2 1 35 35 H 1.08002 * 120.00430 * 179.77088 * 4 3 2 36 36 H 1.08003 * 119.99825 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.46772 * 270.02324 * 7 6 5 38 38 H 1.09000 * 109.47155 * 30.02282 * 7 6 5 39 39 H 1.08995 * 109.46818 * 150.02728 * 7 6 5 40 40 H 1.09000 * 109.47318 * 29.71776 * 9 8 2 41 41 H 1.09000 * 109.47161 * 149.72407 * 9 8 2 42 42 H 1.09407 * 108.40968 * 27.59284 * 13 12 10 43 43 H 1.08902 * 109.27112 * 145.13181 * 13 12 10 44 44 H 1.09207 * 108.79183 * 56.75432 * 14 13 12 45 45 H 1.09271 * 108.55730 * 173.94311 * 14 13 12 46 46 H 1.09289 * 110.59373 * 211.14882 * 17 15 14 47 47 H 1.09313 * 110.68335 * 332.88371 * 17 15 14 48 48 H 1.09034 * 110.67075 * 252.45325 * 18 17 15 49 49 H 1.09290 * 110.24650 * 131.02441 * 18 17 15 50 50 H 1.09122 * 109.58390 * 256.72034 * 21 12 10 51 51 H 1.09161 * 109.48704 * 16.38285 * 21 12 10 52 52 H 0.96998 * 120.00506 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0052 5 6 4.2717 0.0001 -0.0061 6 6 3.5805 -1.1971 -0.0008 7 6 4.3341 -2.5022 -0.0012 8 6 2.1982 -1.1971 0.0049 9 6 1.4447 -2.5022 0.0096 10 6 1.1990 -2.9351 1.4320 11 8 1.5961 -2.2510 2.3514 12 7 0.5368 -4.0845 1.6830 13 6 0.0626 -4.9002 0.5850 14 6 -1.3625 -4.5862 0.1816 15 6 -2.3900 -4.8973 1.2468 16 1 -3.3982 -4.6380 0.9020 17 6 -2.2938 -6.3953 1.5960 18 6 -1.3079 -6.4598 2.7773 19 6 -1.1321 -5.0220 3.2398 20 1 -1.4080 -4.9656 4.2970 21 6 0.3034 -4.5183 3.0918 22 7 -2.0422 -4.1427 2.4777 23 6 -2.4795 -2.8935 2.8361 24 1 -3.1534 -2.3511 2.1894 25 6 -2.0561 -2.3260 4.0301 26 7 -1.2352 -2.9871 4.8183 27 14 -2.6513 -0.6239 4.5180 28 1 -3.5603 -0.0976 3.4682 29 1 -3.3815 -0.7060 5.8085 30 1 -1.4861 0.2846 4.6655 31 1 -0.3633 0.0041 1.0277 32 1 -0.3634 0.8878 -0.5174 33 1 -0.3633 -0.8922 -0.5101 34 1 1.6581 2.1325 0.0004 35 1 4.1205 2.1325 -0.0090 36 1 5.3517 0.0001 -0.0106 37 1 4.5119 -2.8187 -1.0290 38 1 5.2884 -2.3709 0.5088 39 1 3.7469 -3.2608 0.5161 40 1 0.4903 -2.3727 -0.5007 41 1 2.0318 -3.2626 -0.5053 42 1 0.7131 -4.7299 -0.2780 43 1 0.1356 -5.9513 0.8604 44 1 -1.4309 -3.5262 -0.0719 45 1 -1.6052 -5.1624 -0.7146 46 1 -3.2713 -6.7848 1.8913 47 1 -1.9122 -6.9663 0.7454 48 1 -0.3531 -6.8793 2.4593 49 1 -1.7245 -7.0670 3.5849 50 1 0.9997 -5.3184 3.3482 51 1 0.4653 -3.6739 3.7644 52 1 -0.9396 -2.5907 5.6527 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045789178.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:45 Heat of formation + Delta-G solvation = 21.008094 kcal Electronic energy + Delta-G solvation = -32757.621663 eV Core-core repulsion = 28915.567825 eV Total energy + Delta-G solvation = -3842.053838 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.10692 -39.18448 -37.54122 -34.15267 -33.34887 -33.08938 -32.79732 -31.60124 -29.34117 -28.77835 -27.18151 -26.42221 -26.23619 -25.47669 -23.68583 -22.25290 -20.82488 -20.45260 -19.56973 -19.19814 -17.98805 -16.95874 -16.26491 -15.99846 -15.85284 -15.11375 -14.77986 -14.60836 -14.24129 -14.10609 -13.83291 -13.65199 -13.09249 -12.96352 -12.86471 -12.71294 -12.64598 -12.45461 -12.33952 -12.24110 -12.03217 -11.72459 -11.52068 -11.39676 -11.25527 -11.23473 -11.08335 -10.85699 -10.77617 -10.72032 -10.61545 -10.52266 -10.12036 -9.84919 -9.60837 -9.53750 -9.41018 -8.92467 -8.58079 -8.27462 -8.22648 -7.59329 -6.79553 -5.64553 -3.01423 1.61461 1.65127 3.44333 3.48089 3.50345 3.54315 3.82893 4.13125 4.52910 4.91344 4.99790 5.14767 5.17044 5.21105 5.29309 5.37559 5.42563 5.47931 5.50372 5.56261 5.62004 5.68096 5.70515 5.71520 5.75723 5.84825 5.87372 5.92658 5.94491 6.02129 6.08036 6.13992 6.20308 6.26673 6.28046 6.39006 6.44984 6.48342 6.55387 6.61312 6.71642 6.73532 6.78671 6.81691 6.96884 7.00295 7.09481 7.29484 7.38641 7.57869 7.73262 7.93436 8.31851 8.43661 9.14145 9.25428 9.84710 10.54003 11.42903 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011161 B = 0.005149 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.040293 B = 5436.526243 C = 6739.569414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.062 4.062 3 C -0.128 4.128 4 C -0.119 4.119 5 C -0.131 4.131 6 C -0.071 4.071 7 C -0.114 4.114 8 C -0.056 4.056 9 C -0.107 4.107 10 C 0.518 3.482 11 O -0.531 6.531 12 N -0.584 5.584 13 C 0.122 3.878 14 C -0.148 4.148 15 C 0.155 3.845 16 H 0.055 0.945 17 C -0.125 4.125 18 C -0.130 4.130 19 C 0.157 3.843 20 H 0.101 0.899 21 C 0.115 3.885 22 N -0.578 5.578 23 C -0.214 4.214 24 H 0.075 0.925 25 C 0.000 4.000 26 N -0.912 5.912 27 Si 0.905 3.095 28 H -0.283 1.283 29 H -0.292 1.292 30 H -0.290 1.290 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.054 0.946 49 H 0.055 0.945 50 H 0.022 0.978 51 H 0.127 0.873 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.471 -2.667 -12.472 14.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.062 4.062 3 C -0.146 4.146 4 C -0.137 4.137 5 C -0.149 4.149 6 C -0.071 4.071 7 C -0.170 4.170 8 C -0.057 4.057 9 C -0.147 4.147 10 C 0.304 3.696 11 O -0.407 6.407 12 N -0.317 5.317 13 C -0.003 4.003 14 C -0.189 4.189 15 C 0.047 3.953 16 H 0.073 0.927 17 C -0.164 4.164 18 C -0.169 4.169 19 C 0.050 3.950 20 H 0.119 0.881 21 C -0.007 4.007 22 N -0.300 5.300 23 C -0.341 4.341 24 H 0.093 0.907 25 C -0.196 4.196 26 N -0.560 5.560 27 Si 0.736 3.264 28 H -0.208 1.208 29 H -0.220 1.220 30 H -0.217 1.217 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.074 0.926 50 H 0.040 0.960 51 H 0.144 0.856 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.666 -2.119 -11.764 13.686 hybrid contribution -0.305 0.907 0.159 0.970 sum 6.361 -1.212 -11.605 13.289 Atomic orbital electron populations 1.20872 0.91137 1.02042 1.03435 1.19731 0.96077 0.92516 0.97849 1.20913 0.94205 0.97229 1.02283 1.20990 0.94248 0.97617 1.00858 1.20855 0.99191 0.92033 1.02790 1.19637 0.92997 0.95263 0.99227 1.20792 0.99864 0.94779 1.01601 1.19053 0.92649 0.93563 1.00388 1.20819 1.01547 0.95400 0.96933 1.20105 0.78695 0.80811 0.89948 1.90688 1.51220 1.52568 1.46214 1.47989 1.54272 1.21763 1.07647 1.20652 0.94634 0.95660 0.89357 1.22043 0.96609 1.01420 0.98861 1.20986 0.95318 0.90464 0.88557 0.92675 1.22479 0.99054 0.97164 0.97711 1.22230 0.98167 0.98963 0.97501 1.20979 0.88929 0.85524 0.99579 0.88136 1.23260 0.96052 1.00855 0.80559 1.44817 1.52592 1.15256 1.17349 1.18929 1.22422 0.90337 1.02456 0.90747 1.24593 0.99473 0.98171 0.97368 1.69671 1.36521 1.36895 1.12873 0.86143 0.77760 0.84448 0.78008 1.20798 1.21964 1.21662 0.90173 0.92019 0.91438 0.86473 0.86574 0.86590 0.91482 0.91686 0.91509 0.88367 0.89100 0.92804 0.91529 0.92731 0.92991 0.92571 0.92387 0.92719 0.92606 0.95978 0.85572 0.93767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 9.60 36.00 0.35 -1.59 16 2 C -0.06 -1.04 5.88 -104.63 -0.62 -1.66 16 3 C -0.13 -1.96 9.70 -39.58 -0.38 -2.34 16 4 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 5 C -0.13 -1.86 9.70 -39.58 -0.38 -2.24 16 6 C -0.07 -1.10 5.88 -104.62 -0.62 -1.72 16 7 C -0.11 -1.47 9.19 36.01 0.33 -1.14 16 8 C -0.06 -0.95 4.37 -104.62 -0.46 -1.41 16 9 C -0.11 -1.75 3.25 -29.03 -0.09 -1.84 16 10 C 0.52 10.76 7.28 -10.88 -0.08 10.69 16 11 O -0.53 -13.52 15.48 5.56 0.09 -13.44 16 12 N -0.58 -11.63 2.59 -173.52 -0.45 -12.08 16 13 C 0.12 1.93 4.84 -5.78 -0.03 1.90 16 14 C -0.15 -2.39 5.03 -28.43 -0.14 -2.53 16 15 C 0.15 2.88 3.83 -67.13 -0.26 2.62 16 16 H 0.06 1.04 8.20 -51.56 -0.42 0.62 16 17 C -0.13 -1.99 5.99 -25.62 -0.15 -2.15 16 18 C -0.13 -2.27 5.73 -26.69 -0.15 -2.42 16 19 C 0.16 3.47 2.28 -67.82 -0.15 3.31 16 20 H 0.10 2.61 6.28 -51.70 -0.32 2.28 16 21 C 0.11 2.58 5.69 -2.60 -0.01 2.57 16 22 N -0.58 -13.43 2.38 -156.19 -0.37 -13.80 16 23 C -0.21 -5.65 10.37 -14.97 -0.16 -5.81 16 24 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 25 C 0.00 0.00 5.49 -17.43 -0.10 -0.10 16 26 N -0.91 -25.68 8.21 55.49 0.46 -25.23 16 27 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 28 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 30 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 31 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 33 H 0.07 1.05 5.94 -51.93 -0.31 0.74 16 34 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 39 H 0.07 0.95 6.37 -51.93 -0.33 0.62 16 40 H 0.10 1.53 5.45 -51.93 -0.28 1.24 16 41 H 0.09 1.23 5.92 -51.93 -0.31 0.93 16 42 H 0.05 0.71 6.24 -51.70 -0.32 0.39 16 43 H 0.07 0.99 5.49 -51.98 -0.29 0.71 16 44 H 0.05 0.97 7.71 -51.81 -0.40 0.57 16 45 H 0.05 0.68 8.15 -51.78 -0.42 0.26 16 46 H 0.06 0.87 8.17 -51.77 -0.42 0.45 16 47 H 0.06 0.77 7.68 -51.75 -0.40 0.37 16 48 H 0.05 0.87 6.45 -51.91 -0.33 0.53 16 49 H 0.06 0.94 8.17 -51.77 -0.42 0.51 16 50 H 0.02 0.46 7.91 -51.86 -0.41 0.05 16 51 H 0.13 3.43 5.04 -51.84 -0.26 3.17 16 52 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 385.63 15.07 5.81 5.81 Total: -1.00 -31.58 385.63 -11.15 -42.73 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -8.16 Total: 6.31 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -3.50 Total: -7.92 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.37 Total: -51.10 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.09 Total: -13.44 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.58 -11.15 -42.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045789178.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.738 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds