Wall clock time and date at job start Wed Apr 1 2020 02:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47036 * 2 1 4 4 C 1.38253 * 120.00358 * 265.00036 * 3 2 1 5 5 C 1.38211 * 120.00175 * 179.97438 * 4 3 2 6 6 C 1.38255 * 120.00337 * 0.02562 * 5 4 3 7 7 C 1.38209 * 119.99598 * 359.95892 * 6 5 4 8 8 C 1.38216 * 120.00124 * 84.93417 * 3 2 1 9 9 C 1.50707 * 119.99849 * 0.04111 * 8 3 2 10 10 C 1.50696 * 109.47051 * 84.93395 * 9 8 3 11 11 O 1.21283 * 120.00104 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00061 * 180.02562 * 10 9 8 13 13 C 1.44781 * 120.17670 * 359.72139 * 12 10 9 14 14 C 1.51003 * 112.51667 * 264.67753 * 13 12 10 15 15 C 1.51312 * 113.25132 * 285.43229 * 14 13 12 16 16 H 1.09002 * 111.31643 * 185.14858 * 15 14 13 17 17 C 1.54721 * 106.48269 * 307.57697 * 15 14 13 18 18 C 1.54235 * 104.37322 * 89.11324 * 17 15 14 19 19 C 1.50870 * 105.27681 * 11.56500 * 18 17 15 20 20 H 1.09004 * 105.90348 * 122.19274 * 19 18 17 21 21 C 1.49816 * 120.17564 * 179.97438 * 12 10 9 22 22 N 1.48064 * 109.90217 * 7.86942 * 19 18 17 23 23 C 1.36939 * 127.83591 * 155.16714 * 22 19 18 24 24 H 1.08002 * 120.00499 * 350.21139 * 23 22 19 25 25 C 1.38811 * 119.99868 * 170.21826 * 23 22 19 26 26 N 1.31621 * 120.00004 * 351.35318 * 25 23 22 27 27 Si 1.86805 * 120.00034 * 171.35078 * 25 23 22 28 28 H 1.48503 * 109.46959 * 94.98345 * 27 25 23 29 29 H 1.48503 * 109.47206 * 214.98122 * 27 25 23 30 30 H 1.48498 * 109.47049 * 334.98312 * 27 25 23 31 31 H 1.08994 * 109.47028 * 299.99816 * 1 2 3 32 32 H 1.08997 * 109.47222 * 60.00126 * 1 2 3 33 33 H 1.09007 * 109.46830 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47469 * 240.00083 * 2 1 3 35 35 H 1.08997 * 109.47062 * 120.00404 * 2 1 3 36 36 H 1.08005 * 119.99713 * 0.02562 * 4 3 2 37 37 H 1.07999 * 119.99835 * 180.02562 * 5 4 3 38 38 H 1.08001 * 120.00484 * 179.97438 * 6 5 4 39 39 H 1.08004 * 120.00191 * 179.72143 * 7 6 5 40 40 H 1.08999 * 109.47102 * 204.93788 * 9 8 3 41 41 H 1.09002 * 109.46694 * 324.93463 * 9 8 3 42 42 H 1.08996 * 108.93828 * 25.28798 * 13 12 10 43 43 H 1.09001 * 108.93141 * 143.87424 * 13 12 10 44 44 H 1.09002 * 108.79639 * 164.41542 * 14 13 12 45 45 H 1.08991 * 108.66145 * 46.35890 * 14 13 12 46 46 H 1.09000 * 110.45288 * 207.83417 * 17 15 14 47 47 H 1.08996 * 110.45489 * 330.26274 * 17 15 14 48 48 H 1.08997 * 110.28445 * 252.61446 * 18 17 15 49 49 H 1.09003 * 110.28152 * 130.51722 * 18 17 15 50 50 H 1.08997 * 109.54524 * 270.52612 * 21 12 10 51 51 H 1.08997 * 109.54842 * 30.71680 * 21 12 10 52 52 H 0.96996 * 119.99793 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3611 2.0378 -1.1927 5 6 2.8213 3.3411 -1.1927 6 6 2.9533 4.0276 0.0000 7 6 2.6243 3.4109 1.1924 8 6 2.1630 2.1076 1.1923 9 6 1.8041 1.4352 2.4924 10 6 2.9829 0.6378 2.9877 11 8 4.0129 0.6170 2.3478 12 7 2.8922 -0.0532 4.1414 13 6 1.6661 -0.0271 4.9109 14 6 1.6926 1.0124 6.0059 15 6 2.5567 0.6175 7.1835 16 1 2.4822 1.3455 7.9914 17 6 2.0844 -0.7888 7.6227 18 6 2.9384 -1.7595 6.7817 19 6 4.0133 -0.9045 6.1574 20 1 4.9617 -1.3326 6.4822 21 6 4.0616 -0.8478 4.6372 22 7 3.9617 0.4628 6.7231 23 6 4.9777 1.3774 6.8037 24 1 5.9906 1.0811 6.5744 25 6 4.7057 2.6855 7.1803 26 7 3.4590 3.0918 7.2945 27 14 6.1091 3.8692 7.5251 28 1 6.4040 4.6572 6.3014 29 1 5.7221 4.7890 8.6248 30 1 7.3170 3.1024 7.9231 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 2.2576 1.5016 -2.1245 37 1 3.0777 3.8231 -2.1245 38 1 3.3133 5.0459 0.0001 39 1 2.7317 3.9456 2.1246 40 1 1.5404 2.1914 3.2318 41 1 0.9554 0.7696 2.3350 42 1 0.8334 0.1908 4.2422 43 1 1.5095 -1.0079 5.3599 44 1 0.6744 1.1769 6.3586 45 1 2.0718 1.9462 5.5911 46 1 2.2725 -0.9391 8.6857 47 1 1.0252 -0.9211 7.4018 48 1 2.3289 -2.2253 6.0073 49 1 3.3850 -2.5209 7.4211 50 1 4.0134 -1.8587 4.2325 51 1 4.9882 -0.3709 4.3180 52 1 3.2690 4.0059 7.5573 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045801688.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:29 Heat of formation + Delta-G solvation = 21.401064 kcal Electronic energy + Delta-G solvation = -32074.895290 eV Core-core repulsion = 28232.858492 eV Total energy + Delta-G solvation = -3842.036798 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.25469 -39.33734 -37.79277 -34.28469 -34.20927 -32.68938 -32.47438 -31.86206 -29.41344 -29.36026 -27.98513 -26.70298 -25.73915 -24.00252 -23.71439 -22.33620 -21.59912 -20.53687 -19.67669 -19.21119 -18.09832 -16.99271 -16.52328 -16.22817 -15.92756 -15.52328 -15.02045 -14.53522 -14.45511 -14.41214 -13.88229 -13.72721 -13.52864 -13.26683 -13.06922 -12.96292 -12.81250 -12.48054 -12.26896 -11.97594 -11.88823 -11.72021 -11.63877 -11.46390 -11.31463 -11.22554 -11.12757 -10.92051 -10.78761 -10.69828 -10.64290 -10.54035 -10.23165 -10.01481 -9.76515 -9.52605 -9.38244 -9.06458 -8.65527 -8.57522 -8.36233 -7.90551 -6.84288 -5.77077 -3.09406 1.53453 1.60423 3.24858 3.39390 3.45993 3.46418 3.61498 4.01500 4.46363 4.79897 4.87762 5.04656 5.10213 5.17718 5.21980 5.25202 5.34912 5.35285 5.42664 5.44597 5.50717 5.56203 5.61141 5.65127 5.71643 5.72907 5.81857 5.85132 5.89304 5.99863 6.07835 6.13200 6.18367 6.21805 6.23982 6.27772 6.31546 6.32723 6.48629 6.56246 6.65561 6.68360 6.70355 6.80743 6.86968 6.89241 6.97865 7.20303 7.23555 7.55205 7.64435 7.79474 8.13137 8.21403 8.83397 9.14719 9.75625 10.50119 11.35294 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011358 B = 0.004345 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.654653 B = 6442.155536 C = 7957.846975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.067 4.067 4 C -0.122 4.122 5 C -0.124 4.124 6 C -0.125 4.125 7 C -0.102 4.102 8 C -0.052 4.052 9 C -0.105 4.105 10 C 0.520 3.480 11 O -0.547 6.547 12 N -0.585 5.585 13 C 0.104 3.896 14 C -0.143 4.143 15 C 0.184 3.816 16 H 0.106 0.894 17 C -0.143 4.143 18 C -0.116 4.116 19 C 0.131 3.869 20 H 0.038 0.962 21 C 0.118 3.882 22 N -0.577 5.577 23 C -0.212 4.212 24 H 0.075 0.925 25 C -0.004 4.004 26 N -0.915 5.915 27 Si 0.908 3.092 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.045 0.955 45 H 0.082 0.918 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.063 0.937 49 H 0.060 0.940 50 H 0.048 0.952 51 H 0.079 0.921 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.091 -6.161 -10.322 15.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.067 4.067 4 C -0.140 4.140 5 C -0.142 4.142 6 C -0.143 4.143 7 C -0.120 4.120 8 C -0.053 4.053 9 C -0.145 4.145 10 C 0.307 3.693 11 O -0.425 6.425 12 N -0.318 5.318 13 C -0.020 4.020 14 C -0.183 4.183 15 C 0.078 3.922 16 H 0.124 0.876 17 C -0.182 4.182 18 C -0.154 4.154 19 C 0.023 3.977 20 H 0.056 0.944 21 C -0.006 4.006 22 N -0.300 5.300 23 C -0.340 4.340 24 H 0.093 0.907 25 C -0.200 4.200 26 N -0.562 5.562 27 Si 0.738 3.262 28 H -0.218 1.218 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.063 0.937 45 H 0.101 0.899 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.079 0.921 50 H 0.066 0.934 51 H 0.097 0.903 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.453 -5.934 -10.560 14.771 hybrid contribution 0.761 0.865 0.167 1.164 sum -7.692 -5.069 -10.393 13.888 Atomic orbital electron populations 1.21770 0.94887 1.01573 1.02135 1.20531 0.95780 0.93098 1.02953 1.19621 0.98860 0.95593 0.92634 1.20899 1.00775 0.95219 0.97111 1.21029 1.00448 0.94894 0.97807 1.21049 1.00752 0.99916 0.92553 1.21075 0.97927 0.94652 0.98317 1.19209 0.98984 0.93842 0.93255 1.20783 0.97874 1.00138 0.95661 1.20219 0.88960 0.79103 0.81010 1.90657 1.31167 1.63430 1.57291 1.48088 1.14486 1.48172 1.21030 1.21115 0.85141 1.01444 0.94274 1.21873 0.98960 1.00016 0.97439 1.21086 0.83435 0.92205 0.95479 0.87636 1.22860 0.98036 0.98323 0.99013 1.21774 0.97401 0.97486 0.98705 1.20575 0.97675 0.89012 0.90449 0.94388 1.22500 0.89082 0.93031 0.95960 1.45056 1.07443 1.10563 1.66888 1.18919 0.86755 0.88763 1.39598 0.90739 1.24696 0.96374 0.96365 1.02593 1.69858 1.16202 1.16593 1.53552 0.86163 0.81414 0.81016 0.77577 1.21754 1.21692 1.20692 0.92440 0.92604 0.92460 0.91262 0.90989 0.86543 0.86541 0.86360 0.86011 0.88055 0.88527 0.92585 0.90671 0.93662 0.89897 0.92668 0.92238 0.91892 0.92142 0.93431 0.90290 0.93877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.72 37.16 0.36 -1.09 16 2 C -0.09 -1.07 5.38 -27.89 -0.15 -1.22 16 3 C -0.07 -0.97 5.13 -104.63 -0.54 -1.51 16 4 C -0.12 -1.62 9.68 -39.59 -0.38 -2.00 16 5 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 6 C -0.12 -1.77 10.05 -39.59 -0.40 -2.17 16 7 C -0.10 -1.64 9.68 -39.59 -0.38 -2.03 16 8 C -0.05 -0.84 4.37 -104.62 -0.46 -1.30 16 9 C -0.10 -1.67 3.64 -29.03 -0.11 -1.78 16 10 C 0.52 10.16 6.88 -10.99 -0.08 10.08 16 11 O -0.55 -12.62 15.69 5.56 0.09 -12.54 16 12 N -0.59 -10.96 2.87 -173.96 -0.50 -11.46 16 13 C 0.10 1.70 4.95 -5.97 -0.03 1.67 16 14 C -0.14 -2.76 4.82 -28.59 -0.14 -2.89 16 15 C 0.18 3.92 2.91 -66.69 -0.19 3.73 16 16 H 0.11 2.63 6.40 -51.93 -0.33 2.30 16 17 C -0.14 -2.41 6.01 -25.18 -0.15 -2.56 16 18 C -0.12 -1.83 5.78 -27.15 -0.16 -1.98 16 19 C 0.13 2.55 2.62 -68.54 -0.18 2.37 16 20 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 21 C 0.12 2.27 6.03 -2.60 -0.02 2.25 16 22 N -0.58 -13.58 2.69 -156.93 -0.42 -14.01 16 23 C -0.21 -5.70 10.36 -15.06 -0.16 -5.85 16 24 H 0.07 2.01 7.84 -52.49 -0.41 1.60 16 25 C 0.00 -0.11 5.44 -17.43 -0.09 -0.20 16 26 N -0.91 -25.00 9.65 55.49 0.54 -24.47 16 27 Si 0.91 22.03 29.56 -169.99 -5.03 17.01 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 30 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 31 H 0.06 0.58 6.79 -51.93 -0.35 0.22 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.78 8.05 -51.93 -0.42 0.36 16 35 H 0.07 1.00 6.42 -51.93 -0.33 0.67 16 36 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 37 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 39 H 0.12 1.99 8.06 -52.48 -0.42 1.57 16 40 H 0.10 1.64 8.02 -51.93 -0.42 1.23 16 41 H 0.10 1.28 4.89 -51.93 -0.25 1.03 16 42 H 0.06 0.78 6.20 -51.93 -0.32 0.46 16 43 H 0.08 1.12 3.93 -51.93 -0.20 0.92 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.08 1.95 7.24 -51.93 -0.38 1.57 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.06 0.86 7.39 -51.93 -0.38 0.48 16 48 H 0.06 0.88 6.16 -51.93 -0.32 0.56 16 49 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 51 H 0.08 1.77 7.53 -51.93 -0.39 1.38 16 52 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 389.64 15.07 5.87 5.87 Total: -1.00 -30.94 389.64 -11.39 -42.33 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -8.30 Total: 5.76 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -3.64 Total: -8.50 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.39 Total: -49.94 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.54 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.94 -11.39 -42.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045801688.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.735 kcal (2) G-P(sol) polarization free energy of solvation -30.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds