Wall clock time and date at job start Wed Apr 1 2020 02:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47036 * 2 1 4 4 C 1.38253 * 120.00358 * 265.00036 * 3 2 1 5 5 C 1.38211 * 120.00175 * 179.97438 * 4 3 2 6 6 C 1.38255 * 120.00337 * 0.02562 * 5 4 3 7 7 C 1.38209 * 119.99598 * 359.95892 * 6 5 4 8 8 C 1.38216 * 120.00124 * 84.93417 * 3 2 1 9 9 C 1.50707 * 119.99849 * 0.04111 * 8 3 2 10 10 C 1.50696 * 109.47051 * 84.93395 * 9 8 3 11 11 O 1.21283 * 120.00104 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00061 * 180.02562 * 10 9 8 13 13 C 1.44781 * 120.17670 * 359.72139 * 12 10 9 14 14 C 1.51003 * 112.51667 * 264.67753 * 13 12 10 15 15 C 1.51312 * 113.25132 * 285.43229 * 14 13 12 16 16 H 1.09002 * 111.31643 * 185.14858 * 15 14 13 17 17 C 1.54721 * 106.48269 * 307.57697 * 15 14 13 18 18 C 1.54235 * 104.37322 * 89.11324 * 17 15 14 19 19 C 1.50870 * 105.27681 * 11.56500 * 18 17 15 20 20 H 1.09004 * 105.90348 * 122.19274 * 19 18 17 21 21 C 1.49816 * 120.17564 * 179.97438 * 12 10 9 22 22 N 1.48064 * 109.90217 * 7.86942 * 19 18 17 23 23 C 1.36939 * 127.83591 * 155.16714 * 22 19 18 24 24 H 1.08002 * 120.00499 * 350.21139 * 23 22 19 25 25 C 1.38811 * 119.99868 * 170.21826 * 23 22 19 26 26 N 1.31621 * 120.00004 * 351.35318 * 25 23 22 27 27 Si 1.86805 * 120.00034 * 171.35078 * 25 23 22 28 28 H 1.48503 * 109.46959 * 94.98345 * 27 25 23 29 29 H 1.48503 * 109.47206 * 214.98122 * 27 25 23 30 30 H 1.48498 * 109.47049 * 334.98312 * 27 25 23 31 31 H 1.08994 * 109.47028 * 299.99816 * 1 2 3 32 32 H 1.08997 * 109.47222 * 60.00126 * 1 2 3 33 33 H 1.09007 * 109.46830 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47469 * 240.00083 * 2 1 3 35 35 H 1.08997 * 109.47062 * 120.00404 * 2 1 3 36 36 H 1.08005 * 119.99713 * 0.02562 * 4 3 2 37 37 H 1.07999 * 119.99835 * 180.02562 * 5 4 3 38 38 H 1.08001 * 120.00484 * 179.97438 * 6 5 4 39 39 H 1.08004 * 120.00191 * 179.72143 * 7 6 5 40 40 H 1.08999 * 109.47102 * 204.93788 * 9 8 3 41 41 H 1.09002 * 109.46694 * 324.93463 * 9 8 3 42 42 H 1.08996 * 108.93828 * 25.28798 * 13 12 10 43 43 H 1.09001 * 108.93141 * 143.87424 * 13 12 10 44 44 H 1.09002 * 108.79639 * 164.41542 * 14 13 12 45 45 H 1.08991 * 108.66145 * 46.35890 * 14 13 12 46 46 H 1.09000 * 110.45288 * 207.83417 * 17 15 14 47 47 H 1.08996 * 110.45489 * 330.26274 * 17 15 14 48 48 H 1.08997 * 110.28445 * 252.61446 * 18 17 15 49 49 H 1.09003 * 110.28152 * 130.51722 * 18 17 15 50 50 H 1.08997 * 109.54524 * 270.52612 * 21 12 10 51 51 H 1.08997 * 109.54842 * 30.71680 * 21 12 10 52 52 H 0.96996 * 119.99793 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3611 2.0378 -1.1927 5 6 2.8213 3.3411 -1.1927 6 6 2.9533 4.0276 0.0000 7 6 2.6243 3.4109 1.1924 8 6 2.1630 2.1076 1.1923 9 6 1.8041 1.4352 2.4924 10 6 2.9829 0.6378 2.9877 11 8 4.0129 0.6170 2.3478 12 7 2.8922 -0.0532 4.1414 13 6 1.6661 -0.0271 4.9109 14 6 1.6926 1.0124 6.0059 15 6 2.5567 0.6175 7.1835 16 1 2.4822 1.3455 7.9914 17 6 2.0844 -0.7888 7.6227 18 6 2.9384 -1.7595 6.7817 19 6 4.0133 -0.9045 6.1574 20 1 4.9617 -1.3326 6.4822 21 6 4.0616 -0.8478 4.6372 22 7 3.9617 0.4628 6.7231 23 6 4.9777 1.3774 6.8037 24 1 5.9906 1.0811 6.5744 25 6 4.7057 2.6855 7.1803 26 7 3.4590 3.0918 7.2945 27 14 6.1091 3.8692 7.5251 28 1 6.4040 4.6572 6.3014 29 1 5.7221 4.7890 8.6248 30 1 7.3170 3.1024 7.9231 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 2.2576 1.5016 -2.1245 37 1 3.0777 3.8231 -2.1245 38 1 3.3133 5.0459 0.0001 39 1 2.7317 3.9456 2.1246 40 1 1.5404 2.1914 3.2318 41 1 0.9554 0.7696 2.3350 42 1 0.8334 0.1908 4.2422 43 1 1.5095 -1.0079 5.3599 44 1 0.6744 1.1769 6.3586 45 1 2.0718 1.9462 5.5911 46 1 2.2725 -0.9391 8.6857 47 1 1.0252 -0.9211 7.4018 48 1 2.3289 -2.2253 6.0073 49 1 3.3850 -2.5209 7.4211 50 1 4.0134 -1.8587 4.2325 51 1 4.9882 -0.3709 4.3180 52 1 3.2690 4.0059 7.5573 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045801688.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:28 Heat of formation + Delta-G solvation = 5.769724 kcal Electronic energy + Delta-G solvation = -32075.573115 eV Core-core repulsion = 28232.858492 eV Total energy + Delta-G solvation = -3842.714623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.67317 -40.60068 -39.27205 -35.88773 -35.21410 -34.49106 -33.91119 -33.20850 -31.13526 -30.41475 -29.32302 -28.08451 -27.32485 -25.76959 -24.70804 -23.71730 -22.80162 -21.67564 -21.17509 -20.82053 -19.56765 -18.72404 -18.07011 -17.44134 -17.16787 -16.94674 -16.37462 -16.21924 -15.93462 -15.77461 -15.58228 -14.92110 -14.66919 -14.59642 -14.33531 -14.19816 -14.00423 -13.86270 -13.74048 -13.50735 -13.25756 -13.05558 -12.98717 -12.85375 -12.71165 -12.64708 -12.59254 -12.48148 -12.39518 -12.13363 -11.91437 -11.71030 -11.66922 -11.55561 -11.39655 -11.31352 -10.92734 -10.63472 -10.51620 -9.70376 -9.47253 -9.44657 -8.73485 -7.84084 -5.14238 0.42479 0.49338 1.38750 1.41291 1.47961 1.72915 2.20967 2.47261 2.87151 3.32371 3.63998 3.68486 3.82393 3.87257 3.97506 4.01130 4.05116 4.09108 4.22285 4.27521 4.30047 4.32649 4.45573 4.48338 4.52826 4.56580 4.61948 4.71991 4.74270 4.75612 4.78074 4.79760 4.91704 5.02327 5.05434 5.10002 5.14630 5.19010 5.22760 5.24752 5.33264 5.41456 5.42548 5.51361 5.52882 5.58485 5.60687 5.74328 5.76185 5.88577 6.11782 6.14277 6.29815 6.66268 7.14537 7.32725 7.79048 8.54529 9.25467 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011358 B = 0.004345 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.654653 B = 6442.155536 C = 7957.846975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.076 4.076 4 C -0.126 4.126 5 C -0.122 4.122 6 C -0.136 4.136 7 C -0.131 4.131 8 C -0.076 4.076 9 C -0.092 4.092 10 C 0.512 3.488 11 O -0.591 6.591 12 N -0.587 5.587 13 C 0.104 3.896 14 C -0.132 4.132 15 C 0.173 3.827 16 H 0.061 0.939 17 C -0.131 4.131 18 C -0.104 4.104 19 C 0.131 3.869 20 H 0.027 0.973 21 C 0.120 3.880 22 N -0.600 5.600 23 C -0.221 4.221 24 H 0.060 0.940 25 C -0.050 4.050 26 N -0.926 5.926 27 Si 0.955 3.045 28 H -0.301 1.301 29 H -0.288 1.288 30 H -0.276 1.276 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.133 0.867 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.127 0.873 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.067 0.933 45 H 0.032 0.968 46 H 0.054 0.946 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.034 0.966 52 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.335 -8.577 -11.845 18.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 C -0.076 4.076 4 C -0.144 4.144 5 C -0.140 4.140 6 C -0.153 4.153 7 C -0.150 4.150 8 C -0.076 4.076 9 C -0.131 4.131 10 C 0.301 3.699 11 O -0.473 6.473 12 N -0.318 5.318 13 C -0.018 4.018 14 C -0.173 4.173 15 C 0.068 3.932 16 H 0.079 0.921 17 C -0.170 4.170 18 C -0.142 4.142 19 C 0.023 3.977 20 H 0.045 0.955 21 C -0.004 4.004 22 N -0.322 5.322 23 C -0.350 4.350 24 H 0.078 0.922 25 C -0.245 4.245 26 N -0.574 5.574 27 Si 0.786 3.214 28 H -0.229 1.229 29 H -0.215 1.215 30 H -0.201 1.201 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.151 0.849 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.145 0.855 42 H 0.106 0.894 43 H 0.122 0.878 44 H 0.086 0.914 45 H 0.051 0.949 46 H 0.073 0.927 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.099 0.901 50 H 0.099 0.901 51 H 0.053 0.947 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.724 -8.379 -12.057 18.182 hybrid contribution 1.531 1.631 0.619 2.321 sum -9.193 -6.748 -11.438 16.152 Atomic orbital electron populations 1.21743 0.92820 1.02842 1.02410 1.20562 0.97492 0.91485 1.02660 1.19956 0.98518 0.96657 0.92428 1.21315 0.99708 0.95470 0.97860 1.21425 0.99155 0.94946 0.98425 1.21304 1.00717 1.00858 0.92471 1.21158 0.99803 0.95459 0.98552 1.19333 1.00288 0.94001 0.93978 1.20705 0.97206 0.99769 0.95463 1.20866 0.89361 0.78783 0.80895 1.90621 1.33024 1.64891 1.58732 1.48230 1.14983 1.47688 1.20883 1.21261 0.84961 1.01753 0.93860 1.21700 0.99327 0.98709 0.97547 1.21083 0.82846 0.94265 0.95042 0.92117 1.22748 1.00070 0.95026 0.99147 1.21765 0.96261 0.96802 0.99373 1.20822 0.99063 0.87366 0.90429 0.95533 1.22377 0.87819 0.94219 0.95935 1.45210 1.07810 1.11535 1.67682 1.19015 0.87389 0.89785 1.38861 0.92219 1.25248 0.98058 0.97596 1.03578 1.70032 1.16980 1.16084 1.54298 0.85413 0.79823 0.79420 0.76782 1.22892 1.21451 1.20088 0.92714 0.91808 0.90656 0.90035 0.92775 0.83626 0.83402 0.84870 0.87967 0.89072 0.85487 0.89390 0.87805 0.91449 0.94872 0.92748 0.88705 0.88630 0.90078 0.90094 0.94741 0.94701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.72 71.98 0.70 -1.66 16 2 C -0.08 -1.91 5.38 29.85 0.16 -1.75 16 3 C -0.08 -2.10 5.13 -19.87 -0.10 -2.20 16 4 C -0.13 -3.06 9.68 22.27 0.22 -2.85 16 5 C -0.12 -2.95 10.05 22.27 0.22 -2.73 16 6 C -0.14 -3.86 10.05 22.27 0.22 -3.63 16 7 C -0.13 -4.46 9.68 22.27 0.22 -4.25 16 8 C -0.08 -2.46 4.37 -19.86 -0.09 -2.55 16 9 C -0.09 -2.94 3.64 29.10 0.11 -2.84 16 10 C 0.51 20.28 6.88 87.66 0.60 20.88 16 11 O -0.59 -28.29 15.69 -3.04 -0.05 -28.33 16 12 N -0.59 -21.57 2.87 -822.68 -2.36 -23.94 16 13 C 0.10 3.14 4.95 86.05 0.43 3.56 16 14 C -0.13 -5.04 4.82 29.39 0.14 -4.90 16 15 C 0.17 7.37 2.91 44.61 0.13 7.50 16 16 H 0.06 3.12 6.40 -2.39 -0.02 3.11 16 17 C -0.13 -4.00 6.01 31.60 0.19 -3.81 16 18 C -0.10 -2.89 5.78 30.32 0.18 -2.72 16 19 C 0.13 4.97 2.62 43.74 0.11 5.08 16 20 H 0.03 1.06 8.10 -2.39 -0.02 1.04 16 21 C 0.12 4.60 6.03 85.47 0.52 5.11 16 22 N -0.60 -28.85 2.69 -650.41 -1.75 -30.60 16 23 C -0.22 -12.42 10.36 84.03 0.87 -11.55 16 24 H 0.06 3.42 7.84 -2.91 -0.02 3.40 16 25 C -0.05 -2.85 5.44 84.86 0.46 -2.39 16 26 N -0.93 -53.08 9.65 21.65 0.21 -52.87 16 27 Si 0.96 47.27 29.56 68.60 2.03 49.30 16 28 H -0.30 -15.29 7.11 99.48 0.71 -14.58 16 29 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 30 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 31 H 0.05 0.94 6.79 -2.39 -0.02 0.92 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.08 1.61 8.05 -2.39 -0.02 1.59 16 35 H 0.05 1.42 6.42 -2.39 -0.02 1.40 16 36 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 37 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 38 H 0.13 3.22 8.06 -2.91 -0.02 3.19 16 39 H 0.10 3.70 8.06 -2.91 -0.02 3.67 16 40 H 0.09 3.07 8.02 -2.39 -0.02 3.05 16 41 H 0.13 3.14 4.89 -2.39 -0.01 3.13 16 42 H 0.09 2.13 6.20 -2.39 -0.01 2.11 16 43 H 0.10 2.57 3.93 -2.39 -0.01 2.56 16 44 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.03 1.60 7.24 -2.39 -0.02 1.58 16 46 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.09 2.26 7.39 -2.39 -0.02 2.24 16 48 H 0.10 2.08 6.16 -2.39 -0.01 2.07 16 49 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 51 H 0.03 1.61 7.53 -2.39 -0.02 1.59 16 52 H 0.24 13.83 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -73.63 389.64 4.27 -69.36 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.91 Total: 24.76 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 5.28 Total: -7.69 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -3.90 Total: -107.40 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.05 Total: -28.33 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -73.63 4.27 -69.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045801688.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.132 kcal (2) G-P(sol) polarization free energy of solvation -73.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds