Wall clock time and date at job start Wed Apr 1 2020 02:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47021 * 2 1 4 4 C 1.38257 * 120.00336 * 269.97748 * 3 2 1 5 5 C 1.38215 * 120.00095 * 179.97438 * 4 3 2 6 6 C 1.38257 * 120.00088 * 359.79626 * 5 4 3 7 7 C 1.38213 * 119.99809 * 0.47515 * 6 5 4 8 8 C 1.50703 * 120.00047 * 179.77146 * 7 6 5 9 9 C 1.50705 * 109.46942 * 269.72944 * 8 7 6 10 10 O 1.21282 * 120.00093 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99787 * 179.97438 * 9 8 7 12 12 C 1.44892 * 120.25173 * 359.89562 * 11 9 8 13 13 C 1.51512 * 112.30064 * 264.53673 * 12 11 9 14 14 C 1.51310 * 113.25360 * 285.34471 * 13 12 11 15 15 H 1.09004 * 111.31785 * 185.23455 * 14 13 12 16 16 C 1.54720 * 106.48228 * 307.66577 * 14 13 12 17 17 C 1.54237 * 104.37327 * 89.11018 * 16 14 13 18 18 C 1.50869 * 105.27295 * 11.56667 * 17 16 14 19 19 H 1.09007 * 105.89863 * 122.19572 * 18 17 16 20 20 C 1.49817 * 120.17884 * 180.02562 * 11 9 8 21 21 N 1.48063 * 109.90879 * 7.86898 * 18 17 16 22 22 C 1.36939 * 127.84186 * 155.14208 * 21 18 17 23 23 H 1.07995 * 120.00171 * 180.02562 * 22 21 18 24 24 C 1.38811 * 119.99799 * 0.02562 * 22 21 18 25 25 N 1.31618 * 120.00372 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00014 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46964 * 90.00107 * 26 24 22 28 28 H 1.48497 * 109.47207 * 210.00493 * 26 24 22 29 29 H 1.48507 * 109.46909 * 330.00662 * 26 24 22 30 30 C 1.38217 * 120.00032 * 90.00193 * 3 2 1 31 31 H 1.09003 * 109.47029 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47573 * 299.99842 * 1 2 3 33 33 H 1.09001 * 109.46986 * 59.99937 * 1 2 3 34 34 H 1.09004 * 109.47234 * 240.00296 * 2 1 3 35 35 H 1.09001 * 109.46986 * 120.00063 * 2 1 3 36 36 H 1.07994 * 119.99836 * 359.97438 * 4 3 2 37 37 H 1.08003 * 119.99872 * 180.02562 * 5 4 3 38 38 H 1.07992 * 120.00246 * 180.25626 * 6 5 4 39 39 H 1.08999 * 109.47153 * 149.73237 * 8 7 6 40 40 H 1.08994 * 109.47014 * 29.72835 * 8 7 6 41 41 H 1.08998 * 108.90840 * 143.79798 * 12 11 9 42 42 H 1.09001 * 108.87306 * 25.25611 * 12 11 9 43 43 H 1.09003 * 108.72925 * 164.37065 * 13 12 11 44 44 H 1.09005 * 108.73173 * 46.31944 * 13 12 11 45 45 H 1.08995 * 110.45054 * 207.83216 * 16 14 13 46 46 H 1.09003 * 110.45108 * 330.26387 * 16 14 13 47 47 H 1.08996 * 110.28389 * 252.61737 * 17 16 14 48 48 H 1.08998 * 110.27942 * 130.51305 * 17 16 14 49 49 H 1.09002 * 109.54823 * 30.82801 * 20 11 9 50 50 H 1.08999 * 109.54546 * 270.64558 * 20 11 9 51 51 H 0.97002 * 120.00063 * 179.97438 * 25 24 22 52 52 H 1.08001 * 119.99508 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2632 2.0725 -1.1973 5 6 2.7233 3.3758 -1.1972 6 6 2.9488 4.0292 0.0001 7 6 2.7233 3.3759 1.1970 8 6 2.9740 4.0865 2.5022 9 6 4.3972 3.8497 2.9378 10 8 5.1351 3.1705 2.2558 11 7 4.8499 4.3928 4.0852 12 6 3.9737 5.2070 4.9029 13 6 4.1304 6.6865 4.6165 14 6 5.4008 7.2749 5.1905 15 1 5.4377 8.3547 5.0465 16 6 5.4268 6.8866 6.6879 17 6 6.1477 5.5233 6.7174 18 6 6.7357 5.3547 5.3383 19 1 7.8082 5.2264 5.4846 20 6 6.2641 4.1606 4.5218 21 7 6.5708 6.6057 4.5635 22 6 7.3252 7.0464 3.5091 23 1 7.0909 7.9871 3.0333 24 6 8.3912 6.2839 3.0518 25 7 8.6766 5.1371 3.6313 26 14 9.4200 6.8846 1.6129 27 1 10.5479 7.7068 2.1200 28 1 9.9545 5.7182 0.8654 29 1 8.5752 7.7067 0.7096 30 6 2.2627 2.0724 1.1970 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0839 1.5631 -2.1326 37 1 2.9033 3.8849 -2.1326 38 1 3.3044 5.0489 0.0002 39 1 2.2929 3.7024 3.2616 40 1 2.8070 5.1556 2.3717 41 1 4.2001 5.0243 5.9534 42 1 2.9409 4.9169 4.7099 43 1 3.2770 7.2171 5.0388 44 1 4.1324 6.8357 3.5367 45 1 5.9850 7.6251 7.2632 46 1 4.4121 6.7914 7.0744 47 1 5.4363 4.7241 6.9252 48 1 6.9388 5.5305 7.4672 49 1 6.9017 4.0431 3.6455 50 1 6.3138 3.2591 5.1324 51 1 9.4213 4.6041 3.3114 52 1 2.0823 1.5633 2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045805684.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:33 Heat of formation + Delta-G solvation = 23.376373 kcal Electronic energy + Delta-G solvation = -31441.204274 eV Core-core repulsion = 27599.253132 eV Total energy + Delta-G solvation = -3841.951142 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.05415 -39.27719 -37.80218 -34.36698 -34.19347 -32.97943 -32.25322 -31.44958 -29.46014 -29.44083 -27.96603 -26.65084 -25.71930 -23.93228 -23.73773 -22.36971 -21.74550 -20.47774 -19.52806 -19.23885 -18.06482 -17.03093 -16.33948 -16.28543 -15.64337 -15.35718 -14.99660 -14.83201 -14.49986 -14.30953 -13.90777 -13.74382 -13.60770 -13.29149 -13.01050 -12.88976 -12.75245 -12.47720 -12.21062 -11.97801 -11.95245 -11.72176 -11.56523 -11.42083 -11.31662 -11.19916 -11.15776 -10.88122 -10.79147 -10.75501 -10.69109 -10.66777 -10.19170 -9.91906 -9.66638 -9.54920 -9.43321 -9.02263 -8.65172 -8.55418 -8.34648 -7.67133 -6.86086 -5.68433 -3.06415 1.53045 1.58665 3.38925 3.42243 3.47469 3.50758 3.74079 4.07739 4.48976 4.73090 4.80455 4.98189 5.12537 5.17852 5.23959 5.28371 5.28682 5.34508 5.40188 5.45399 5.49359 5.57304 5.60896 5.63806 5.68788 5.70080 5.74713 5.81215 5.87110 5.88497 5.94748 6.04764 6.13030 6.19869 6.26506 6.26877 6.28908 6.45450 6.49303 6.61373 6.64245 6.72027 6.74004 6.80666 6.82509 6.99374 7.06952 7.19655 7.30613 7.53155 7.70436 7.91720 8.28127 8.35886 9.01298 9.18991 9.78658 10.50736 11.38078 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012288 B = 0.003618 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.097214 B = 7736.504424 C = 8973.750079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.085 4.085 4 C -0.125 4.125 5 C -0.116 4.116 6 C -0.108 4.108 7 C -0.051 4.051 8 C -0.103 4.103 9 C 0.510 3.490 10 O -0.539 6.539 11 N -0.592 5.592 12 C 0.107 3.893 13 C -0.151 4.151 14 C 0.151 3.849 15 H 0.061 0.939 16 C -0.130 4.130 17 C -0.124 4.124 18 C 0.142 3.858 19 H 0.099 0.901 20 C 0.128 3.872 21 N -0.579 5.579 22 C -0.211 4.211 23 H 0.077 0.923 24 C -0.008 4.008 25 N -0.917 5.917 26 Si 0.913 3.087 27 H -0.290 1.290 28 H -0.290 1.290 29 H -0.284 1.284 30 C -0.104 4.104 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.127 0.873 50 H 0.028 0.972 51 H 0.253 0.747 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.276 -4.263 0.192 16.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.085 4.085 4 C -0.143 4.143 5 C -0.134 4.134 6 C -0.126 4.126 7 C -0.051 4.051 8 C -0.143 4.143 9 C 0.297 3.703 10 O -0.417 6.417 11 N -0.325 5.325 12 C -0.017 4.017 13 C -0.192 4.192 14 C 0.043 3.957 15 H 0.079 0.921 16 C -0.169 4.169 17 C -0.162 4.162 18 C 0.036 3.964 19 H 0.116 0.884 20 C 0.007 3.993 21 N -0.301 5.301 22 C -0.339 4.339 23 H 0.095 0.905 24 C -0.203 4.203 25 N -0.566 5.566 26 Si 0.744 3.256 27 H -0.218 1.218 28 H -0.216 1.216 29 H -0.210 1.210 30 C -0.122 4.122 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.145 0.855 50 H 0.046 0.954 51 H 0.064 0.936 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.618 -4.667 -0.325 16.303 hybrid contribution 0.515 0.435 -0.735 0.997 sum -15.103 -4.233 -1.060 15.721 Atomic orbital electron populations 1.21739 0.94957 1.01395 1.02122 1.20514 0.95908 0.92951 1.02739 1.19766 0.99684 0.95922 0.93146 1.20913 1.01120 0.95047 0.97190 1.21040 0.99643 0.94965 0.97785 1.20998 0.99328 1.00242 0.92017 1.19346 0.97590 0.94206 0.93965 1.20759 0.96211 1.01975 0.95393 1.20213 0.88652 0.80467 0.80995 1.90687 1.58088 1.39731 1.53189 1.48508 1.13914 1.48450 1.21651 1.21012 0.92681 0.91252 0.96758 1.22055 0.99240 0.95877 1.02001 1.21129 0.87910 0.95831 0.90858 0.92051 1.22662 0.99078 0.97317 0.97825 1.21971 0.99037 0.96598 0.98620 1.20513 1.02411 0.86377 0.87133 0.88370 1.23217 0.78710 0.95514 1.01899 1.44955 1.30622 1.18815 1.35730 1.18942 1.06557 1.03047 1.05335 0.90476 1.24668 0.99156 0.96844 0.99633 1.69702 1.30759 1.13179 1.42910 0.86100 0.80199 0.77432 0.81911 1.21781 1.21621 1.20969 1.20783 1.00088 0.93984 0.97378 0.92638 0.92586 0.92677 0.91232 0.91129 0.86612 0.86324 0.86295 0.88899 0.88551 0.90219 0.92468 0.92805 0.92447 0.92471 0.92190 0.92368 0.92312 0.85539 0.95415 0.93601 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.89 37.16 0.37 -0.88 16 2 C -0.08 -0.87 6.06 -27.88 -0.17 -1.04 16 3 C -0.09 -1.13 5.13 -104.62 -0.54 -1.66 16 4 C -0.12 -1.63 9.70 -39.58 -0.38 -2.01 16 5 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 6 C -0.11 -1.69 9.70 -39.58 -0.38 -2.07 16 7 C -0.05 -0.80 4.37 -104.62 -0.46 -1.26 16 8 C -0.10 -1.59 4.31 -29.03 -0.13 -1.71 16 9 C 0.51 10.42 7.68 -10.98 -0.08 10.34 16 10 O -0.54 -13.48 15.69 5.56 0.09 -13.39 16 11 N -0.59 -11.77 2.88 -173.59 -0.50 -12.27 16 12 C 0.11 1.69 4.98 -5.66 -0.03 1.66 16 13 C -0.15 -2.46 5.02 -28.34 -0.14 -2.60 16 14 C 0.15 2.82 4.08 -66.69 -0.27 2.55 16 15 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 16 C -0.13 -2.06 6.01 -25.18 -0.15 -2.21 16 17 C -0.12 -2.16 5.78 -27.15 -0.16 -2.32 16 18 C 0.14 3.16 1.94 -68.57 -0.13 3.03 16 19 H 0.10 2.56 6.14 -51.92 -0.32 2.24 16 20 C 0.13 2.93 5.67 -2.62 -0.01 2.91 16 21 N -0.58 -13.65 2.69 -156.96 -0.42 -14.07 16 22 C -0.21 -5.64 10.40 -15.06 -0.16 -5.80 16 23 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 24 C -0.01 -0.21 5.47 -17.43 -0.10 -0.30 16 25 N -0.92 -25.85 8.14 55.49 0.45 -25.40 16 26 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 29 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 30 C -0.10 -1.52 9.36 -39.58 -0.37 -1.89 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 35 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 36 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 38 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 39 H 0.09 1.16 7.36 -51.93 -0.38 0.78 16 40 H 0.10 1.38 8.05 -51.93 -0.42 0.96 16 41 H 0.08 1.20 3.93 -51.93 -0.20 1.00 16 42 H 0.06 0.74 6.21 -51.93 -0.32 0.41 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.06 0.78 7.39 -51.93 -0.38 0.40 16 47 H 0.06 0.91 6.15 -51.93 -0.32 0.59 16 48 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.13 3.53 5.32 -51.93 -0.28 3.26 16 50 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 52 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 394.26 15.07 5.94 5.94 Total: -1.00 -31.71 394.26 -11.66 -43.37 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -8.51 Total: 5.66 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -3.69 Total: -7.29 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.47 Total: -51.74 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.09 Total: -13.39 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.71 -11.66 -43.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045805684.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.749 kcal (2) G-P(sol) polarization free energy of solvation -31.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds