Wall clock time and date at job start Wed Apr 1 2020 01:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38255 * 120.00051 * 2 1 4 4 C 1.38210 * 120.00251 * 179.97438 * 3 2 1 5 5 C 1.38259 * 120.00060 * 359.74989 * 4 3 2 6 6 C 1.50700 * 120.00425 * 180.27530 * 5 4 3 7 7 C 1.38218 * 119.99665 * 0.50362 * 5 4 3 8 8 C 1.50694 * 120.00171 * 179.76944 * 7 5 4 9 9 C 1.50698 * 109.47608 * 84.72677 * 8 7 5 10 10 O 1.21289 * 119.99775 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00337 * 180.02562 * 9 8 7 12 12 C 1.44789 * 120.18264 * 0.02562 * 11 9 8 13 13 C 1.51511 * 112.21991 * 264.53500 * 12 11 9 14 14 C 1.51315 * 113.25532 * 285.36353 * 13 12 11 15 15 H 1.08991 * 111.31685 * 185.23420 * 14 13 12 16 16 C 1.54718 * 106.47765 * 307.66593 * 14 13 12 17 17 C 1.54623 * 104.28728 * 88.99010 * 16 14 13 18 18 C 1.50866 * 105.21790 * 11.53649 * 17 16 14 19 19 H 1.09004 * 105.90377 * 122.36240 * 18 17 16 20 20 C 1.49815 * 120.17910 * 179.97438 * 11 9 8 21 21 N 1.48066 * 109.90512 * 8.03799 * 18 17 16 22 22 C 1.36936 * 127.83778 * 155.16520 * 21 18 17 23 23 H 1.07996 * 120.00169 * 23.51596 * 22 21 18 24 24 C 1.38813 * 119.99735 * 203.52143 * 22 21 18 25 25 N 1.31625 * 120.00188 * 28.41342 * 24 22 21 26 26 Si 1.86801 * 120.00229 * 208.41691 * 24 22 21 27 27 H 1.48499 * 109.47299 * 179.97438 * 26 24 22 28 28 H 1.48499 * 109.46901 * 300.00373 * 26 24 22 29 29 H 1.48504 * 109.46689 * 59.99883 * 26 24 22 30 30 C 1.38212 * 120.00216 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47156 * 270.02286 * 1 2 3 32 32 H 1.09003 * 109.46760 * 30.02003 * 1 2 3 33 33 H 1.09000 * 109.47240 * 150.02491 * 1 2 3 34 34 H 1.07999 * 120.00255 * 0.02562 * 3 2 1 35 35 H 1.08002 * 120.00117 * 180.02562 * 4 3 2 36 36 H 1.08997 * 109.46939 * 270.22881 * 6 5 4 37 37 H 1.08991 * 109.47067 * 30.23226 * 6 5 4 38 38 H 1.09000 * 109.46832 * 150.23057 * 6 5 4 39 39 H 1.08998 * 109.47112 * 324.72413 * 8 7 5 40 40 H 1.09001 * 109.47374 * 204.72930 * 8 7 5 41 41 H 1.08993 * 108.93282 * 143.82587 * 12 11 9 42 42 H 1.09002 * 108.92768 * 25.23905 * 12 11 9 43 43 H 1.09005 * 108.72762 * 164.38601 * 13 12 11 44 44 H 1.09005 * 108.72506 * 46.33927 * 13 12 11 45 45 H 1.08996 * 110.45105 * 207.83506 * 16 14 13 46 46 H 1.08999 * 110.45151 * 330.38865 * 16 14 13 47 47 H 1.09001 * 110.16753 * 252.67583 * 17 16 14 48 48 H 1.09004 * 110.53297 * 130.58397 * 17 16 14 49 49 H 1.09003 * 109.55159 * 270.57584 * 20 11 9 50 50 H 1.09000 * 109.54899 * 30.76591 * 20 11 9 51 51 H 0.97006 * 119.99564 * 5.91424 * 25 24 22 52 52 H 1.08004 * 119.99541 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0063 6 6 5.7787 0.0000 0.0132 7 6 3.5807 -1.1970 0.0010 8 6 4.3341 -2.5020 0.0020 9 6 4.6920 -2.8744 1.4177 10 8 4.3668 -2.1514 2.3357 11 7 5.3735 -4.0108 1.6639 12 6 5.7642 -4.8766 0.5711 13 6 4.7716 -5.9990 0.3463 14 6 4.8555 -7.0891 1.3923 15 1 4.1949 -7.9217 1.1508 16 6 6.3392 -7.5234 1.4556 17 6 6.9681 -6.5806 2.5075 18 6 5.8007 -5.8957 3.1738 19 1 5.8879 -6.1228 4.2363 20 6 5.7318 -4.3846 3.0697 21 7 4.5313 -6.5100 2.7226 22 6 3.3298 -6.5340 3.3790 23 1 3.1059 -5.7840 4.1231 24 6 2.3995 -7.5223 3.0879 25 7 2.8024 -8.6992 2.6576 26 14 0.5758 -7.1823 3.3069 27 1 -0.2017 -8.3902 2.9306 28 1 0.3031 -6.8395 4.7258 29 1 0.1763 -6.0464 2.4377 30 6 2.1981 -1.1969 0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3634 -0.8902 -0.5134 34 1 1.6583 2.1326 0.0004 35 1 4.1204 2.1327 0.0010 36 1 6.1467 0.0019 -1.0128 37 1 6.1397 0.8890 0.5303 38 1 6.1397 -0.8909 0.5270 39 1 5.2450 -2.3961 -0.5872 40 1 3.7094 -3.2826 -0.4321 41 1 6.7407 -5.3071 0.7927 42 1 5.8397 -4.2834 -0.3403 43 1 4.9570 -6.4392 -0.6336 44 1 3.7644 -5.5824 0.3550 45 1 6.4186 -8.5623 1.7755 46 1 6.8183 -7.3845 0.4865 47 1 7.6085 -5.8463 2.0189 48 1 7.5393 -7.1516 3.2396 49 1 6.7005 -3.9552 3.3257 50 1 4.9724 -4.0046 3.7530 51 1 3.7498 -8.9054 2.6253 52 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045839877.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:51 Heat of formation + Delta-G solvation = 16.569756 kcal Electronic energy + Delta-G solvation = -31733.935864 eV Core-core repulsion = 27891.689565 eV Total energy + Delta-G solvation = -3842.246299 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.40597 -39.50881 -38.02547 -34.51919 -34.15570 -32.80136 -32.58763 -31.97873 -29.38871 -29.26802 -28.27317 -26.91230 -25.87177 -24.74998 -23.76738 -22.59448 -21.89665 -20.52583 -19.65507 -19.31318 -18.22171 -17.51013 -16.71643 -16.03496 -15.90153 -15.63690 -14.98612 -14.82598 -14.48519 -14.23871 -13.95186 -13.76188 -13.42786 -13.32792 -13.21482 -13.09833 -12.80319 -12.71516 -12.62522 -12.44956 -12.13358 -11.93272 -11.85826 -11.59799 -11.51626 -11.43184 -11.33319 -11.20977 -10.87062 -10.82614 -10.70886 -10.39003 -10.18631 -10.03907 -10.01612 -9.67904 -9.50814 -9.24885 -8.62914 -8.49342 -8.27960 -8.07318 -6.92956 -6.12323 -3.22212 1.41997 1.50209 3.07827 3.43118 3.49434 3.53119 3.70397 3.86263 4.52983 4.72596 4.81125 4.92721 4.97791 5.05423 5.09103 5.17168 5.21339 5.23764 5.30255 5.37204 5.45571 5.50141 5.53469 5.55597 5.59967 5.61244 5.63787 5.66527 5.77420 5.81896 5.83642 5.93917 5.95927 6.03335 6.08961 6.12316 6.21321 6.25305 6.28514 6.34910 6.48371 6.52037 6.55562 6.64237 6.67417 6.75684 6.80024 6.98098 7.08082 7.12748 7.15986 7.79350 7.95076 8.45790 8.66231 8.95706 9.74978 10.40447 11.17378 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011134 B = 0.004174 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.276824 B = 6707.339823 C = 8418.467425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.077 4.077 6 C -0.113 4.113 7 C -0.054 4.054 8 C -0.103 4.103 9 C 0.516 3.484 10 O -0.542 6.542 11 N -0.589 5.589 12 C 0.107 3.893 13 C -0.149 4.149 14 C 0.143 3.857 15 H 0.093 0.907 16 C -0.132 4.132 17 C -0.117 4.117 18 C 0.127 3.873 19 H 0.041 0.959 20 C 0.122 3.878 21 N -0.574 5.574 22 C -0.317 4.317 23 H 0.059 0.941 24 C -0.022 4.022 25 N -0.909 5.909 26 Si 1.058 2.942 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.294 1.294 30 C -0.102 4.102 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.051 0.949 50 H 0.080 0.920 51 H 0.268 0.732 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.351 13.409 -9.512 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.077 4.077 6 C -0.170 4.170 7 C -0.055 4.055 8 C -0.143 4.143 9 C 0.304 3.696 10 O -0.420 6.420 11 N -0.322 5.322 12 C -0.017 4.017 13 C -0.190 4.190 14 C 0.036 3.964 15 H 0.111 0.889 16 C -0.171 4.171 17 C -0.155 4.155 18 C 0.019 3.981 19 H 0.059 0.941 20 C -0.001 4.001 21 N -0.297 5.297 22 C -0.444 4.444 23 H 0.077 0.923 24 C -0.224 4.224 25 N -0.550 5.550 26 Si 0.888 3.112 27 H -0.211 1.211 28 H -0.220 1.220 29 H -0.222 1.222 30 C -0.120 4.120 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.098 0.902 51 H 0.080 0.920 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.516 13.123 -9.110 16.601 hybrid contribution 1.474 0.611 0.323 1.628 sum 5.990 13.733 -8.786 17.369 Atomic orbital electron populations 1.20771 0.91360 1.02433 1.02369 1.19821 0.95935 0.93052 1.00391 1.20921 0.94117 0.97241 1.01701 1.20891 0.94127 0.97117 1.01580 1.19633 0.95745 0.92564 0.99723 1.20782 0.91644 1.02916 1.01642 1.19172 0.93351 0.93251 0.99695 1.20738 1.01440 0.96147 0.95942 1.20291 0.77638 0.81126 0.90568 1.90677 1.53508 1.51523 1.46274 1.48152 1.55315 1.20833 1.07856 1.21110 0.99506 0.92286 0.88775 1.21983 0.99849 0.97865 0.99276 1.21277 0.93200 0.95461 0.86452 0.88913 1.22764 0.97579 0.99095 0.97612 1.21852 0.96864 0.98339 0.98475 1.20459 0.88395 0.90848 0.98379 0.94065 1.22383 0.99067 0.96802 0.81894 1.44948 1.05465 1.64805 1.14459 1.19568 0.91398 1.10569 1.22889 0.92308 1.25663 1.04757 0.91579 1.00447 1.70793 1.18220 1.18608 1.47373 0.83609 0.76025 0.75406 0.76140 1.21056 1.21950 1.22175 1.20912 0.93400 0.97775 0.99892 0.91214 0.91836 0.91564 0.86455 0.86387 0.91428 0.91667 0.91656 0.88478 0.88226 0.90054 0.91973 0.92585 0.92157 0.92148 0.91981 0.91852 0.91922 0.93062 0.90196 0.92041 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 36.01 0.36 -0.86 16 2 C -0.09 -1.24 5.88 -104.62 -0.62 -1.85 16 3 C -0.12 -1.52 9.70 -39.59 -0.38 -1.90 16 4 C -0.12 -1.50 9.70 -39.58 -0.38 -1.89 16 5 C -0.08 -1.06 5.88 -104.62 -0.62 -1.67 16 6 C -0.11 -1.30 9.22 36.01 0.33 -0.97 16 7 C -0.05 -0.82 4.37 -104.63 -0.46 -1.28 16 8 C -0.10 -1.49 3.63 -29.04 -0.11 -1.60 16 9 C 0.52 9.44 6.89 -10.99 -0.08 9.37 16 10 O -0.54 -11.94 15.69 5.55 0.09 -11.85 16 11 N -0.59 -10.38 2.86 -173.99 -0.50 -10.87 16 12 C 0.11 1.60 4.98 -5.71 -0.03 1.57 16 13 C -0.15 -2.62 5.01 -28.33 -0.14 -2.76 16 14 C 0.14 2.98 3.14 -66.68 -0.21 2.77 16 15 H 0.09 2.26 5.70 -51.93 -0.30 1.97 16 16 C -0.13 -2.20 6.04 -24.97 -0.15 -2.35 16 17 C -0.12 -1.86 5.80 -26.95 -0.16 -2.02 16 18 C 0.13 2.50 2.59 -68.84 -0.18 2.32 16 19 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 20 C 0.12 2.29 6.01 -2.89 -0.02 2.28 16 21 N -0.57 -13.60 2.48 -157.26 -0.39 -13.99 16 22 C -0.32 -8.73 10.10 -15.06 -0.15 -8.89 16 23 H 0.06 1.70 7.97 -52.49 -0.42 1.28 16 24 C -0.02 -0.63 5.16 -17.43 -0.09 -0.72 16 25 N -0.91 -26.46 12.42 55.49 0.69 -25.77 16 26 Si 1.06 25.62 30.00 -169.99 -5.10 20.52 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 C -0.10 -1.54 9.34 -39.58 -0.37 -1.91 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 38 H 0.06 0.83 6.15 -51.93 -0.32 0.51 16 39 H 0.10 1.14 6.27 -51.93 -0.33 0.81 16 40 H 0.10 1.40 8.02 -51.93 -0.42 0.99 16 41 H 0.08 1.13 3.92 -51.93 -0.20 0.92 16 42 H 0.06 0.75 6.20 -51.93 -0.32 0.43 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.06 0.86 7.38 -51.93 -0.38 0.48 16 47 H 0.06 0.86 6.13 -51.93 -0.32 0.54 16 48 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.08 1.76 7.53 -51.93 -0.39 1.37 16 51 H 0.27 7.78 6.79 -40.82 -0.28 7.50 16 52 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 393.81 15.07 5.93 5.93 Total: -1.00 -32.78 393.81 -11.09 -43.87 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -8.37 Total: 4.52 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -3.44 Total: -12.37 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.20 Total: -50.63 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.10 Total: 20.52 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.78 -11.09 -43.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045839877.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.436 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds