Wall clock time and date at job start Wed Apr 1 2020 01:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38255 * 120.00051 * 2 1 4 4 C 1.38210 * 120.00251 * 179.97438 * 3 2 1 5 5 C 1.38259 * 120.00060 * 359.74989 * 4 3 2 6 6 C 1.50700 * 120.00425 * 180.27530 * 5 4 3 7 7 C 1.38218 * 119.99665 * 0.50362 * 5 4 3 8 8 C 1.50694 * 120.00171 * 179.76944 * 7 5 4 9 9 C 1.50698 * 109.47608 * 84.72677 * 8 7 5 10 10 O 1.21289 * 119.99775 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00337 * 180.02562 * 9 8 7 12 12 C 1.44789 * 120.18264 * 0.02562 * 11 9 8 13 13 C 1.51511 * 112.21991 * 264.53500 * 12 11 9 14 14 C 1.51315 * 113.25532 * 285.36353 * 13 12 11 15 15 H 1.08991 * 111.31685 * 185.23420 * 14 13 12 16 16 C 1.54718 * 106.47765 * 307.66593 * 14 13 12 17 17 C 1.54623 * 104.28728 * 88.99010 * 16 14 13 18 18 C 1.50866 * 105.21790 * 11.53649 * 17 16 14 19 19 H 1.09004 * 105.90377 * 122.36240 * 18 17 16 20 20 C 1.49815 * 120.17910 * 179.97438 * 11 9 8 21 21 N 1.48066 * 109.90512 * 8.03799 * 18 17 16 22 22 C 1.36936 * 127.83778 * 155.16520 * 21 18 17 23 23 H 1.07996 * 120.00169 * 23.51596 * 22 21 18 24 24 C 1.38813 * 119.99735 * 203.52143 * 22 21 18 25 25 N 1.31625 * 120.00188 * 28.41342 * 24 22 21 26 26 Si 1.86801 * 120.00229 * 208.41691 * 24 22 21 27 27 H 1.48499 * 109.47299 * 179.97438 * 26 24 22 28 28 H 1.48499 * 109.46901 * 300.00373 * 26 24 22 29 29 H 1.48504 * 109.46689 * 59.99883 * 26 24 22 30 30 C 1.38212 * 120.00216 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47156 * 270.02286 * 1 2 3 32 32 H 1.09003 * 109.46760 * 30.02003 * 1 2 3 33 33 H 1.09000 * 109.47240 * 150.02491 * 1 2 3 34 34 H 1.07999 * 120.00255 * 0.02562 * 3 2 1 35 35 H 1.08002 * 120.00117 * 180.02562 * 4 3 2 36 36 H 1.08997 * 109.46939 * 270.22881 * 6 5 4 37 37 H 1.08991 * 109.47067 * 30.23226 * 6 5 4 38 38 H 1.09000 * 109.46832 * 150.23057 * 6 5 4 39 39 H 1.08998 * 109.47112 * 324.72413 * 8 7 5 40 40 H 1.09001 * 109.47374 * 204.72930 * 8 7 5 41 41 H 1.08993 * 108.93282 * 143.82587 * 12 11 9 42 42 H 1.09002 * 108.92768 * 25.23905 * 12 11 9 43 43 H 1.09005 * 108.72762 * 164.38601 * 13 12 11 44 44 H 1.09005 * 108.72506 * 46.33927 * 13 12 11 45 45 H 1.08996 * 110.45105 * 207.83506 * 16 14 13 46 46 H 1.08999 * 110.45151 * 330.38865 * 16 14 13 47 47 H 1.09001 * 110.16753 * 252.67583 * 17 16 14 48 48 H 1.09004 * 110.53297 * 130.58397 * 17 16 14 49 49 H 1.09003 * 109.55159 * 270.57584 * 20 11 9 50 50 H 1.09000 * 109.54899 * 30.76591 * 20 11 9 51 51 H 0.97006 * 119.99564 * 5.91424 * 25 24 22 52 52 H 1.08004 * 119.99541 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0063 6 6 5.7787 0.0000 0.0132 7 6 3.5807 -1.1970 0.0010 8 6 4.3341 -2.5020 0.0020 9 6 4.6920 -2.8744 1.4177 10 8 4.3668 -2.1514 2.3357 11 7 5.3735 -4.0108 1.6639 12 6 5.7642 -4.8766 0.5711 13 6 4.7716 -5.9990 0.3463 14 6 4.8555 -7.0891 1.3923 15 1 4.1949 -7.9217 1.1508 16 6 6.3392 -7.5234 1.4556 17 6 6.9681 -6.5806 2.5075 18 6 5.8007 -5.8957 3.1738 19 1 5.8879 -6.1228 4.2363 20 6 5.7318 -4.3846 3.0697 21 7 4.5313 -6.5100 2.7226 22 6 3.3298 -6.5340 3.3790 23 1 3.1059 -5.7840 4.1231 24 6 2.3995 -7.5223 3.0879 25 7 2.8024 -8.6992 2.6576 26 14 0.5758 -7.1823 3.3069 27 1 -0.2017 -8.3902 2.9306 28 1 0.3031 -6.8395 4.7258 29 1 0.1763 -6.0464 2.4377 30 6 2.1981 -1.1969 0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3634 -0.8902 -0.5134 34 1 1.6583 2.1326 0.0004 35 1 4.1204 2.1327 0.0010 36 1 6.1467 0.0019 -1.0128 37 1 6.1397 0.8890 0.5303 38 1 6.1397 -0.8909 0.5270 39 1 5.2450 -2.3961 -0.5872 40 1 3.7094 -3.2826 -0.4321 41 1 6.7407 -5.3071 0.7927 42 1 5.8397 -4.2834 -0.3403 43 1 4.9570 -6.4392 -0.6336 44 1 3.7644 -5.5824 0.3550 45 1 6.4186 -8.5623 1.7755 46 1 6.8183 -7.3845 0.4865 47 1 7.6085 -5.8463 2.0189 48 1 7.5393 -7.1516 3.2396 49 1 6.7005 -3.9552 3.3257 50 1 4.9724 -4.0046 3.7530 51 1 3.7498 -8.9054 2.6253 52 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045839877.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:49 Heat of formation + Delta-G solvation = -0.903356 kcal Electronic energy + Delta-G solvation = -31734.693555 eV Core-core repulsion = 27891.689565 eV Total energy + Delta-G solvation = -3843.003990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -41.77775 -40.68916 -39.43142 -36.10798 -35.17314 -34.65160 -33.98934 -33.13796 -31.16047 -30.14853 -29.55078 -28.25867 -27.40426 -25.75945 -25.57296 -23.90900 -23.00982 -21.73809 -21.16613 -20.86240 -19.57821 -19.34127 -18.14356 -17.30917 -17.09743 -16.74487 -16.35919 -16.27608 -15.81900 -15.74232 -15.54104 -15.17657 -14.93040 -14.61953 -14.37174 -14.18619 -14.02844 -14.02355 -13.79272 -13.59197 -13.49683 -13.34094 -12.96148 -12.91690 -12.78915 -12.74932 -12.62165 -12.57373 -12.36402 -12.05500 -11.97575 -11.85517 -11.82897 -11.76900 -11.65221 -11.41160 -11.10447 -10.65910 -10.54088 -9.68977 -9.54732 -9.26868 -8.91017 -8.29786 -5.35802 0.40172 0.47194 1.47943 1.53234 1.66922 1.73375 2.10830 2.55148 2.81179 3.11410 3.48886 3.64551 3.74794 3.82727 3.87103 3.88875 4.00585 4.08295 4.11511 4.13680 4.24872 4.31296 4.33950 4.39170 4.47154 4.54739 4.56566 4.58467 4.66388 4.70041 4.76413 4.78710 4.81386 4.83345 4.87612 4.88831 5.00233 5.05582 5.09100 5.09727 5.19030 5.20900 5.35923 5.37008 5.46779 5.52380 5.59558 5.65737 5.68350 5.72707 5.73377 6.14970 6.33918 6.58427 6.92650 7.26033 7.67196 8.38981 8.97766 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011134 B = 0.004174 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.276824 B = 6707.339823 C = 8418.467425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.105 4.105 3 C -0.125 4.125 4 C -0.124 4.124 5 C -0.089 4.089 6 C -0.110 4.110 7 C -0.076 4.076 8 C -0.092 4.092 9 C 0.510 3.490 10 O -0.589 6.589 11 N -0.590 5.590 12 C 0.105 3.895 13 C -0.141 4.141 14 C 0.131 3.869 15 H 0.050 0.950 16 C -0.121 4.121 17 C -0.106 4.106 18 C 0.129 3.871 19 H 0.014 0.986 20 C 0.127 3.873 21 N -0.599 5.599 22 C -0.319 4.319 23 H 0.030 0.970 24 C -0.066 4.066 25 N -0.930 5.930 26 Si 1.098 2.902 27 H -0.282 1.282 28 H -0.283 1.283 29 H -0.292 1.292 30 C -0.131 4.131 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.132 0.868 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.021 0.979 45 H 0.048 0.952 46 H 0.106 0.894 47 H 0.103 0.897 48 H 0.074 0.926 49 H 0.084 0.916 50 H 0.032 0.968 51 H 0.259 0.741 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.724 15.213 -11.920 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.105 4.105 3 C -0.143 4.143 4 C -0.142 4.142 5 C -0.089 4.089 6 C -0.167 4.167 7 C -0.077 4.077 8 C -0.131 4.131 9 C 0.299 3.701 10 O -0.470 6.470 11 N -0.321 5.321 12 C -0.017 4.017 13 C -0.182 4.182 14 C 0.025 3.975 15 H 0.068 0.932 16 C -0.159 4.159 17 C -0.144 4.144 18 C 0.022 3.978 19 H 0.032 0.968 20 C 0.003 3.997 21 N -0.322 5.322 22 C -0.449 4.449 23 H 0.048 0.952 24 C -0.264 4.264 25 N -0.572 5.572 26 Si 0.924 3.076 27 H -0.208 1.208 28 H -0.209 1.209 29 H -0.219 1.219 30 C -0.149 4.149 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.150 0.850 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.109 0.891 44 H 0.040 0.960 45 H 0.067 0.933 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.093 0.907 49 H 0.102 0.898 50 H 0.051 0.949 51 H 0.069 0.931 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.924 14.916 -11.541 20.091 hybrid contribution 0.728 0.100 1.119 1.339 sum 7.652 15.016 -10.423 19.816 Atomic orbital electron populations 1.20805 0.89908 1.03607 1.02479 1.20150 0.97268 0.92984 1.00134 1.21298 0.94513 0.97866 1.00611 1.21294 0.94459 0.97920 1.00529 1.19996 0.97198 0.92442 0.99280 1.20809 0.89934 1.02728 1.03199 1.19346 0.93424 0.94089 1.00826 1.20712 1.02870 0.96040 0.93506 1.20997 0.76656 0.80693 0.91733 1.90647 1.55189 1.53117 1.48033 1.48270 1.55040 1.21018 1.07819 1.21343 0.99270 0.91629 0.89488 1.21880 0.98713 0.97732 0.99831 1.21410 0.95142 0.95163 0.85829 0.93179 1.22700 0.94634 0.98490 1.00102 1.21841 0.95401 0.98657 0.98475 1.20692 0.88375 0.91313 0.97417 0.96793 1.22152 0.99088 0.96061 0.82403 1.45090 1.05749 1.65284 1.16097 1.19532 0.93705 1.09165 1.22451 0.95239 1.26635 1.07598 0.91359 1.00782 1.70872 1.17582 1.19304 1.49444 0.83059 0.72717 0.75239 0.76589 1.20763 1.20891 1.21939 1.21049 0.94078 0.98084 1.01691 0.91537 0.89483 0.91620 0.83764 0.83692 0.88845 0.90701 0.92970 0.84987 0.88246 0.87596 0.87898 0.89076 0.96048 0.93318 0.87593 0.87910 0.90743 0.89826 0.94882 0.93071 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.36 10.01 71.24 0.71 -1.64 16 2 C -0.11 -2.80 5.88 -19.87 -0.12 -2.92 16 3 C -0.13 -2.90 9.70 22.27 0.22 -2.68 16 4 C -0.12 -2.87 9.70 22.27 0.22 -2.65 16 5 C -0.09 -2.30 5.88 -19.86 -0.12 -2.42 16 6 C -0.11 -2.21 9.22 71.24 0.66 -1.56 16 7 C -0.08 -2.27 4.37 -19.87 -0.09 -2.36 16 8 C -0.09 -2.55 3.63 29.10 0.11 -2.45 16 9 C 0.51 18.52 6.89 87.66 0.60 19.13 16 10 O -0.59 -26.71 15.69 -3.06 -0.05 -26.76 16 11 N -0.59 -20.07 2.86 -822.77 -2.36 -22.43 16 12 C 0.11 2.76 4.98 86.21 0.43 3.19 16 13 C -0.14 -4.73 5.01 29.56 0.15 -4.58 16 14 C 0.13 5.42 3.14 44.61 0.14 5.56 16 15 H 0.05 2.53 5.70 -2.39 -0.01 2.51 16 16 C -0.12 -3.71 6.04 31.73 0.19 -3.52 16 17 C -0.11 -3.04 5.80 30.45 0.18 -2.86 16 18 C 0.13 5.07 2.59 43.54 0.11 5.19 16 19 H 0.01 0.61 8.09 -2.39 -0.02 0.59 16 20 C 0.13 4.78 6.01 85.28 0.51 5.29 16 21 N -0.60 -29.30 2.48 -651.46 -1.62 -30.92 16 22 C -0.32 -18.62 10.10 84.03 0.85 -17.77 16 23 H 0.03 1.85 7.97 -2.91 -0.02 1.82 16 24 C -0.07 -3.85 5.16 84.86 0.44 -3.41 16 25 N -0.93 -56.26 12.42 21.65 0.27 -55.99 16 26 Si 1.10 54.03 30.00 68.60 2.06 56.09 16 27 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 28 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 29 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 30 C -0.13 -4.06 9.34 22.27 0.21 -3.85 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 32 H 0.09 1.39 8.09 -2.39 -0.02 1.37 16 33 H 0.06 1.36 8.09 -2.39 -0.02 1.34 16 34 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.34 8.09 -2.39 -0.02 1.32 16 38 H 0.05 1.19 6.15 -2.39 -0.01 1.17 16 39 H 0.13 2.64 6.27 -2.39 -0.01 2.62 16 40 H 0.10 2.74 8.02 -2.39 -0.02 2.73 16 41 H 0.11 2.31 3.92 -2.39 -0.01 2.30 16 42 H 0.10 1.95 6.20 -2.39 -0.01 1.94 16 43 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 44 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.11 2.36 7.38 -2.39 -0.02 2.34 16 47 H 0.10 2.19 6.13 -2.39 -0.01 2.18 16 48 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 49 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 50 H 0.03 1.54 7.53 -2.39 -0.02 1.52 16 51 H 0.26 15.69 6.79 -92.70 -0.63 15.06 16 52 H 0.11 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -78.79 393.81 4.75 -74.04 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 1.05 Total: 22.27 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 5.40 Total: -16.31 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -3.71 Total: -109.33 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.05 Total: -26.76 kcal Atomic # 14 Polarization: 54.03 SS G_CDS: 2.06 Total: 56.09 kcal Total: -78.79 4.75 -74.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045839877.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.139 kcal (2) G-P(sol) polarization free energy of solvation -78.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.93 seconds