Wall clock time and date at job start Wed Apr 1 2020 01:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38237 * 119.99701 * 2 1 4 4 C 1.38235 * 119.99746 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.99807 * 179.97438 * 4 3 2 6 6 C 1.38232 * 119.99961 * 359.95484 * 4 3 2 7 7 C 1.38230 * 119.99976 * 0.02562 * 6 4 3 8 8 C 1.50701 * 119.99773 * 179.97438 * 7 6 4 9 9 C 1.50706 * 109.47570 * 89.99799 * 8 7 6 10 10 O 1.21280 * 119.99580 * 359.97438 * 9 8 7 11 11 N 1.35479 * 120.00062 * 179.97438 * 9 8 7 12 12 C 1.44437 * 119.17664 * 0.13490 * 11 9 8 13 13 C 1.51320 * 113.92738 * 260.97345 * 12 11 9 14 14 C 1.51260 * 114.09643 * 290.60165 * 13 12 11 15 15 H 1.09460 * 111.01592 * 183.57981 * 14 13 12 16 16 C 1.54209 * 108.43075 * 306.06368 * 14 13 12 17 17 C 1.54073 * 104.52086 * 89.53826 * 16 14 13 18 18 C 1.52004 * 105.37449 * 13.57548 * 17 16 14 19 19 H 1.09692 * 107.92352 * 121.34614 * 18 17 16 20 20 C 1.48939 * 119.17852 * 179.97438 * 11 9 8 21 21 N 1.47820 * 109.61315 * 4.25013 * 18 17 16 22 22 C 1.36998 * 127.29654 * 158.76120 * 21 18 17 23 23 H 1.07996 * 120.00188 * 180.02562 * 22 21 18 24 24 C 1.38817 * 120.00049 * 0.02830 * 22 21 18 25 25 N 1.31620 * 119.99849 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99954 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47357 * 89.99933 * 26 24 22 28 28 H 1.48506 * 109.47176 * 209.99507 * 26 24 22 29 29 H 1.48500 * 109.47247 * 329.99555 * 26 24 22 30 30 C 1.38233 * 119.99823 * 180.23222 * 2 1 3 31 31 H 1.09000 * 109.47120 * 90.00079 * 1 2 3 32 32 H 1.08997 * 109.46903 * 210.00371 * 1 2 3 33 33 H 1.09000 * 109.47032 * 329.99880 * 1 2 3 34 34 H 1.07997 * 120.00082 * 0.02562 * 3 2 1 35 35 H 1.08998 * 109.47717 * 269.97824 * 5 4 3 36 36 H 1.09004 * 109.47128 * 29.98027 * 5 4 3 37 37 H 1.09001 * 109.47028 * 149.97906 * 5 4 3 38 38 H 1.08003 * 119.99676 * 180.02562 * 6 4 3 39 39 H 1.08994 * 109.47523 * 329.99357 * 8 7 6 40 40 H 1.09001 * 109.47365 * 209.99684 * 8 7 6 41 41 H 1.09790 * 108.02094 * 21.00885 * 12 11 9 42 42 H 1.08776 * 109.74042 * 137.69593 * 12 11 9 43 43 H 1.09139 * 108.88117 * 52.29544 * 13 12 11 44 44 H 1.09326 * 108.52147 * 169.55350 * 13 12 11 45 45 H 1.09349 * 110.52337 * 208.37348 * 16 14 13 46 46 H 1.09183 * 110.76674 * 330.28640 * 16 14 13 47 47 H 1.08905 * 110.94908 * 253.53993 * 17 16 14 48 48 H 1.09384 * 110.06999 * 132.22127 * 17 16 14 49 49 H 1.09420 * 109.37743 * 27.54035 * 20 11 9 50 50 H 1.09432 * 109.33291 * 269.11483 * 20 11 9 51 51 H 0.97005 * 120.00023 * 179.97438 * 25 24 22 52 52 H 1.07988 * 120.00431 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3340 2.5023 -0.0011 6 6 4.2717 0.0001 -0.0001 7 6 3.5805 -1.1970 0.0003 8 6 4.3341 -2.5021 0.0001 9 6 4.5859 -2.9370 1.4209 10 8 4.1926 -2.2542 2.3428 11 7 5.2516 -4.0908 1.6683 12 6 5.7146 -4.8888 0.5569 13 6 4.8116 -6.0556 0.2209 14 6 4.8096 -7.1543 1.2606 15 1 4.1914 -7.9982 0.9386 16 6 6.2670 -7.5924 1.5098 17 6 6.7584 -6.6726 2.6439 18 6 5.5052 -6.0224 3.2071 19 1 5.4430 -6.2760 4.2725 20 6 5.4909 -4.5029 3.0794 21 7 4.3119 -6.5843 2.5396 22 6 3.0230 -6.5824 3.0038 23 1 2.2362 -7.0299 2.4147 24 6 2.7282 -6.0052 4.2314 25 7 3.6872 -5.4602 4.9496 26 14 0.9708 -6.0032 4.8647 27 1 0.7315 -7.2314 5.6645 28 1 0.7533 -4.8070 5.7174 29 1 0.0306 -5.9697 3.7157 30 6 2.1982 -1.1971 -0.0049 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.6582 2.1325 0.0004 35 1 4.5156 2.8166 -1.0289 36 1 3.7449 3.2622 0.5125 37 1 5.2864 2.3722 0.5127 38 1 5.3517 0.0002 -0.0001 39 1 5.2862 -2.3719 -0.5141 40 1 3.7448 -3.2619 -0.5133 41 1 5.7736 -4.2393 -0.3263 42 1 6.7197 -5.2521 0.7591 43 1 3.7915 -5.6883 0.0963 44 1 5.1350 -6.4817 -0.7325 45 1 6.3043 -8.6392 1.8237 46 1 6.8718 -7.4541 0.6113 47 1 7.4480 -5.9202 2.2638 48 1 7.2549 -7.2641 3.4185 49 1 4.7029 -4.0904 3.7167 50 1 6.4511 -4.1004 3.4165 51 1 3.4812 -5.0566 5.8073 52 1 1.6583 -2.1324 -0.0091 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045840444.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:58 Heat of formation + Delta-G solvation = 14.694417 kcal Electronic energy + Delta-G solvation = -31629.972040 eV Core-core repulsion = 27787.644421 eV Total energy + Delta-G solvation = -3842.327620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.93 seconds Orbital eigenvalues (eV) -39.99041 -39.23778 -37.74828 -34.22580 -33.39891 -33.29833 -32.87224 -31.57378 -29.38106 -28.55468 -27.22129 -26.59584 -26.55752 -25.63128 -23.72043 -22.23012 -20.84861 -20.60397 -19.52125 -19.23269 -17.97899 -16.98890 -16.30345 -16.14785 -15.73126 -15.23179 -14.81449 -14.67299 -14.36474 -13.98070 -13.94636 -13.78558 -13.25433 -13.18662 -12.95704 -12.81798 -12.71760 -12.50483 -12.42436 -12.28842 -12.03887 -11.86278 -11.55339 -11.40445 -11.39231 -11.21496 -11.14165 -10.92233 -10.82221 -10.77004 -10.74232 -10.67675 -10.16196 -9.87647 -9.63707 -9.54441 -9.41559 -9.00944 -8.62802 -8.35104 -8.33075 -7.63736 -6.83254 -5.66789 -3.04521 1.54457 1.57344 3.38143 3.42885 3.47868 3.51534 3.73073 4.07399 4.50506 4.82114 4.87952 4.91025 5.17548 5.26519 5.27884 5.33787 5.38513 5.41697 5.44714 5.47564 5.55353 5.56923 5.65212 5.66673 5.70763 5.72065 5.73450 5.74430 5.86363 5.90443 5.93895 5.95317 6.14577 6.21196 6.27615 6.31832 6.34337 6.47482 6.49855 6.62028 6.69521 6.72885 6.75016 6.80887 6.84480 7.00477 7.06055 7.22331 7.36812 7.55665 7.71102 7.92433 8.28787 8.33882 9.02398 9.21935 9.81110 10.51657 11.40093 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.004060 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.477260 B = 6894.449077 C = 8241.375597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.083 4.083 3 C -0.127 4.127 4 C -0.086 4.086 5 C -0.111 4.111 6 C -0.112 4.112 7 C -0.047 4.047 8 C -0.103 4.103 9 C 0.509 3.491 10 O -0.535 6.535 11 N -0.587 5.587 12 C 0.119 3.881 13 C -0.147 4.147 14 C 0.152 3.848 15 H 0.058 0.942 16 C -0.126 4.126 17 C -0.130 4.130 18 C 0.157 3.843 19 H 0.103 0.897 20 C 0.119 3.881 21 N -0.581 5.581 22 C -0.213 4.213 23 H 0.076 0.924 24 C -0.005 4.005 25 N -0.916 5.916 26 Si 0.911 3.089 27 H -0.290 1.290 28 H -0.290 1.290 29 H -0.284 1.284 30 C -0.108 4.108 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.055 0.945 49 H 0.124 0.876 50 H 0.022 0.978 51 H 0.253 0.747 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.960 7.349 -13.250 15.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.083 4.083 3 C -0.145 4.145 4 C -0.086 4.086 5 C -0.167 4.167 6 C -0.131 4.131 7 C -0.047 4.047 8 C -0.143 4.143 9 C 0.296 3.704 10 O -0.411 6.411 11 N -0.320 5.320 12 C -0.006 4.006 13 C -0.188 4.188 14 C 0.045 3.955 15 H 0.076 0.924 16 C -0.165 4.165 17 C -0.168 4.168 18 C 0.050 3.950 19 H 0.121 0.879 20 C -0.002 4.002 21 N -0.304 5.304 22 C -0.341 4.341 23 H 0.094 0.906 24 C -0.201 4.201 25 N -0.564 5.564 26 Si 0.742 3.258 27 H -0.218 1.218 28 H -0.216 1.216 29 H -0.210 1.210 30 C -0.126 4.126 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.134 0.866 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.142 0.858 50 H 0.040 0.960 51 H 0.064 0.936 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.591 7.754 -12.513 15.153 hybrid contribution -0.853 -0.110 0.243 0.893 sum 2.738 7.644 -12.270 14.714 Atomic orbital electron populations 1.20772 0.91429 1.02831 1.01915 1.19809 0.95848 0.93036 0.99607 1.20794 0.93472 0.97228 1.03039 1.19771 0.93782 0.95015 1.00075 1.20746 0.99927 0.94202 1.01846 1.20771 0.99276 0.91462 1.01544 1.19319 0.93518 0.93748 0.98126 1.20749 1.01189 0.95706 0.96628 1.20434 0.78143 0.81645 0.90166 1.90684 1.50239 1.54066 1.46154 1.48125 1.55440 1.20511 1.07884 1.20657 0.97953 0.93138 0.88824 1.21996 1.00317 0.97793 0.98704 1.21050 0.92784 0.93557 0.88135 0.92405 1.22504 0.97040 0.99057 0.97853 1.22211 0.98509 0.98379 0.97710 1.20922 0.84095 0.89786 1.00174 0.87912 1.23158 1.00657 0.97154 0.79261 1.44913 1.03559 1.65778 1.16135 1.18940 0.82734 1.31603 1.00814 0.90597 1.24650 0.97534 1.00550 0.97363 1.69700 1.29983 1.43072 1.13673 0.86129 0.84089 0.77001 0.78593 1.21791 1.21640 1.20996 1.20869 0.93520 0.97622 1.00597 0.91450 0.91418 0.91774 0.86584 0.91522 0.91792 0.91659 0.86588 0.88819 0.88504 0.92616 0.91455 0.92450 0.92936 0.92490 0.92290 0.92541 0.92606 0.85816 0.95957 0.93622 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 36.01 0.36 -0.95 16 2 C -0.08 -1.20 5.88 -104.62 -0.62 -1.82 16 3 C -0.13 -1.72 9.36 -39.58 -0.37 -2.10 16 4 C -0.09 -1.18 5.88 -104.63 -0.62 -1.79 16 5 C -0.11 -1.13 10.01 36.00 0.36 -0.77 16 6 C -0.11 -1.68 9.36 -39.59 -0.37 -2.05 16 7 C -0.05 -0.76 4.37 -104.62 -0.46 -1.21 16 8 C -0.10 -1.60 4.20 -29.03 -0.12 -1.73 16 9 C 0.51 10.52 7.67 -10.66 -0.08 10.43 16 10 O -0.53 -13.47 15.54 5.56 0.09 -13.38 16 11 N -0.59 -11.78 2.87 -173.79 -0.50 -12.28 16 12 C 0.12 1.90 4.87 -5.99 -0.03 1.87 16 13 C -0.15 -2.42 5.06 -28.46 -0.14 -2.56 16 14 C 0.15 2.87 3.90 -67.01 -0.26 2.61 16 15 H 0.06 1.09 8.18 -51.67 -0.42 0.67 16 16 C -0.13 -2.02 5.98 -25.54 -0.15 -2.17 16 17 C -0.13 -2.29 5.71 -26.68 -0.15 -2.45 16 18 C 0.16 3.52 2.22 -67.97 -0.15 3.37 16 19 H 0.10 2.69 6.28 -51.54 -0.32 2.37 16 20 C 0.12 2.75 5.43 -2.95 -0.02 2.73 16 21 N -0.58 -13.76 2.54 -156.20 -0.40 -14.15 16 22 C -0.21 -5.71 10.37 -15.03 -0.16 -5.87 16 23 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 24 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 25 N -0.92 -25.95 8.18 55.49 0.45 -25.50 16 26 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 30 C -0.11 -1.75 9.36 -39.58 -0.37 -2.12 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 33 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 34 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 37 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 38 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 39 H 0.09 1.19 7.30 -51.93 -0.38 0.81 16 40 H 0.10 1.41 8.03 -51.93 -0.42 0.99 16 41 H 0.06 0.73 5.91 -51.48 -0.30 0.43 16 42 H 0.07 1.01 5.03 -52.06 -0.26 0.75 16 43 H 0.06 1.06 8.15 -51.85 -0.42 0.64 16 44 H 0.05 0.69 8.17 -51.74 -0.42 0.27 16 45 H 0.06 0.89 8.17 -51.73 -0.42 0.47 16 46 H 0.06 0.79 7.60 -51.83 -0.39 0.39 16 47 H 0.06 0.91 6.36 -51.98 -0.33 0.58 16 48 H 0.06 0.95 8.17 -51.71 -0.42 0.52 16 49 H 0.12 3.46 5.22 -51.69 -0.27 3.19 16 50 H 0.02 0.49 8.18 -51.68 -0.42 0.06 16 51 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 52 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 394.83 15.07 5.95 5.95 Total: -1.00 -32.01 394.83 -11.43 -43.43 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -8.56 Total: 5.18 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -3.44 Total: -6.80 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.44 Total: -51.93 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.09 Total: -13.38 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.01 -11.43 -43.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045840444.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.127 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.93 seconds