Wall clock time and date at job start Wed Apr 1 2020 02:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47106 * 2 1 4 4 C 1.38232 * 120.00039 * 89.99823 * 3 2 1 5 5 C 1.38240 * 119.99898 * 179.97438 * 4 3 2 6 6 C 1.38227 * 119.99950 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99810 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47371 * 90.00031 * 7 6 5 9 9 O 1.21286 * 119.99591 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00411 * 180.02562 * 8 7 6 11 11 C 1.44898 * 120.23556 * 359.97438 * 10 8 7 12 12 C 1.51657 * 112.60578 * 265.58110 * 11 10 8 13 13 C 1.51504 * 113.13041 * 285.37304 * 12 11 10 14 14 H 1.09000 * 111.52387 * 184.33059 * 13 12 11 15 15 C 1.54612 * 107.63474 * 307.03138 * 13 12 11 16 16 C 1.54344 * 103.01470 * 81.50503 * 15 13 12 17 17 C 1.52275 * 104.70517 * 23.93648 * 16 15 13 18 18 H 1.09002 * 108.72709 * 113.10003 * 17 16 15 19 19 C 1.53039 * 112.67316 * 233.68385 * 17 16 15 20 20 N 1.47913 * 109.57121 * 354.45288 * 17 16 15 21 21 C 1.36943 * 127.30031 * 164.41395 * 20 17 16 22 22 H 1.08000 * 120.00122 * 180.02562 * 21 20 17 23 23 C 1.38806 * 119.99659 * 0.02910 * 21 20 17 24 24 N 1.31621 * 120.00593 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99925 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.46909 * 60.00204 * 25 23 21 27 27 H 1.48495 * 109.47534 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47451 * 300.00063 * 25 23 21 29 29 C 1.38231 * 120.00406 * 0.25382 * 6 5 4 30 30 C 1.38236 * 119.99901 * 270.02350 * 3 2 1 31 31 H 1.08994 * 109.47337 * 60.00037 * 1 2 3 32 32 H 1.09007 * 109.46782 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47578 * 299.99893 * 1 2 3 34 34 H 1.09002 * 109.47578 * 240.00107 * 2 1 3 35 35 H 1.08994 * 109.47337 * 119.99962 * 2 1 3 36 36 H 1.08001 * 119.99992 * 0.02562 * 4 3 2 37 37 H 1.07997 * 119.99670 * 180.02562 * 5 4 3 38 38 H 1.09005 * 109.47375 * 329.99913 * 7 6 5 39 39 H 1.09004 * 109.47073 * 209.99839 * 7 6 5 40 40 H 1.09003 * 108.85276 * 144.77611 * 11 10 8 41 41 H 1.08995 * 108.85745 * 26.38754 * 11 10 8 42 42 H 1.09001 * 108.75476 * 164.43043 * 12 11 10 43 43 H 1.09003 * 108.74956 * 46.30798 * 12 11 10 44 44 H 1.09006 * 110.70123 * 323.12054 * 15 13 12 45 45 H 1.08998 * 110.85650 * 199.96217 * 15 13 12 46 46 H 1.09004 * 110.38857 * 265.13112 * 16 15 13 47 47 H 1.08999 * 110.48930 * 142.79189 * 16 15 13 48 48 H 1.09006 * 109.59745 * 186.01508 * 19 17 16 49 49 H 1.09000 * 109.60350 * 306.47646 * 19 17 16 50 50 H 0.96997 * 120.00278 * 180.02562 * 24 23 21 51 51 H 1.07999 * 120.00289 * 179.72846 * 29 6 5 52 52 H 1.07995 * 120.00358 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7239 3.3756 1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4566 5.4480 0.0000 8 6 4.9637 5.4481 0.0000 9 8 5.5701 4.3977 0.0005 10 7 5.6376 6.6153 0.0006 11 6 4.9183 7.8731 0.0005 12 6 4.7231 8.4330 -1.3953 13 6 5.9880 9.0271 -1.9805 14 1 5.8017 9.4886 -2.9503 15 6 6.5405 10.0496 -0.9609 16 6 7.2976 9.1601 0.0480 17 6 7.6443 7.8993 -0.7324 18 1 8.7264 7.8492 -0.8534 19 6 7.1687 6.6235 -0.0337 20 7 7.0201 7.9585 -2.0721 21 6 7.3202 7.1860 -3.1623 22 1 6.7864 7.3306 -4.0900 23 6 8.3103 6.2171 -3.0749 24 7 8.9611 6.0411 -1.9444 25 14 8.7192 5.1628 -4.5617 26 1 9.1671 6.0338 -5.6780 27 1 9.8041 4.2116 -4.2109 28 1 7.5119 4.4054 -4.9787 29 6 2.7185 3.3776 -1.1971 30 6 2.2622 2.0726 -1.1972 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.0830 1.5632 2.1324 37 1 2.9043 3.8846 2.1324 38 1 3.0933 5.9619 0.8900 39 1 3.0933 5.9618 -0.8901 40 1 5.4747 8.5971 0.5959 41 1 3.9411 7.7202 0.4585 42 1 3.9569 9.2074 -1.3583 43 1 4.3773 7.6321 -2.0489 44 1 5.7263 10.5825 -0.4698 45 1 7.2216 10.7502 -1.4440 46 1 6.6570 8.9177 0.8960 47 1 8.2056 9.6575 0.3889 48 1 7.5336 5.7516 -0.5767 49 1 7.5457 6.6043 0.9888 50 1 9.6532 5.3643 -1.8835 51 1 2.8943 3.8881 -2.1324 52 1 2.0814 1.5638 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045856554.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:36 Heat of formation + Delta-G solvation = 19.821487 kcal Electronic energy + Delta-G solvation = -31369.480388 eV Core-core repulsion = 27527.375094 eV Total energy + Delta-G solvation = -3842.105293 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.47429 -40.48233 -39.29684 -35.75241 -35.49380 -34.73078 -33.08145 -32.00945 -31.81898 -31.27325 -29.00107 -27.85984 -27.35867 -25.53203 -24.26889 -23.65362 -23.15430 -21.66089 -21.19097 -20.95417 -19.59120 -18.79350 -17.73054 -17.24073 -16.89555 -16.72458 -16.65699 -16.18722 -15.93598 -15.69778 -15.53490 -14.76118 -14.64028 -14.51854 -14.42068 -14.19663 -14.14648 -13.78893 -13.63922 -13.44282 -13.14439 -12.98852 -12.92309 -12.86515 -12.71318 -12.63021 -12.56435 -12.52716 -12.27659 -12.06819 -12.01948 -11.69995 -11.66262 -11.50979 -11.41834 -11.29197 -10.86702 -10.63512 -10.24383 -9.80435 -9.38661 -9.28719 -8.75530 -7.77292 -5.11320 0.40491 0.51822 1.39109 1.42694 1.47025 1.86597 2.30774 2.49297 2.88410 3.36799 3.63769 3.72186 3.86542 3.92857 3.96101 4.04498 4.12059 4.15842 4.16723 4.22818 4.30930 4.44778 4.48451 4.53280 4.55800 4.58595 4.60782 4.73593 4.75891 4.77720 4.85797 4.93660 4.97413 5.04376 5.07928 5.15950 5.17979 5.20750 5.22287 5.28749 5.37201 5.38429 5.42259 5.51048 5.51186 5.62173 5.70222 5.71807 5.75699 5.88665 6.06560 6.13929 6.29461 6.86725 7.16300 7.49688 7.82447 8.53238 9.26494 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012276 B = 0.003551 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.320071 B = 7883.973363 C = 9215.661358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.092 4.092 4 C -0.124 4.124 5 C -0.114 4.114 6 C -0.080 4.080 7 C -0.088 4.088 8 C 0.499 3.501 9 O -0.601 6.601 10 N -0.597 5.597 11 C 0.082 3.918 12 C -0.141 4.141 13 C 0.136 3.864 14 H 0.058 0.942 15 C -0.113 4.113 16 C -0.136 4.136 17 C 0.171 3.829 18 H 0.047 0.953 19 C 0.125 3.875 20 N -0.603 5.603 21 C -0.212 4.212 22 H 0.073 0.927 23 C -0.062 4.062 24 N -0.931 5.931 25 Si 0.958 3.042 26 H -0.275 1.275 27 H -0.300 1.300 28 H -0.295 1.295 29 C -0.124 4.124 30 C -0.129 4.129 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.142 0.858 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.027 0.973 44 H 0.107 0.893 45 H 0.059 0.941 46 H 0.096 0.904 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.028 0.972 50 H 0.240 0.760 51 H 0.109 0.891 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.703 1.544 8.467 19.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 C -0.092 4.092 4 C -0.142 4.142 5 C -0.132 4.132 6 C -0.081 4.081 7 C -0.127 4.127 8 C 0.288 3.712 9 O -0.483 6.483 10 N -0.329 5.329 11 C -0.040 4.040 12 C -0.181 4.181 13 C 0.030 3.970 14 H 0.076 0.924 15 C -0.152 4.152 16 C -0.173 4.173 17 C 0.064 3.936 18 H 0.065 0.935 19 C 0.004 3.996 20 N -0.327 5.327 21 C -0.341 4.341 22 H 0.091 0.909 23 C -0.255 4.255 24 N -0.581 5.581 25 Si 0.789 3.211 26 H -0.201 1.201 27 H -0.226 1.226 28 H -0.222 1.222 29 C -0.143 4.143 30 C -0.147 4.147 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.160 0.840 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.046 0.954 44 H 0.125 0.875 45 H 0.077 0.923 46 H 0.114 0.886 47 H 0.086 0.914 48 H 0.098 0.902 49 H 0.046 0.954 50 H 0.050 0.950 51 H 0.128 0.872 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.219 0.876 8.360 19.161 hybrid contribution 1.089 -1.003 -1.332 1.992 sum -16.130 -0.127 7.027 17.595 Atomic orbital electron populations 1.21709 0.93563 1.02491 1.02027 1.20579 0.97054 0.91070 1.03347 1.20189 0.98912 0.97325 0.92820 1.21249 0.99979 0.94540 0.98431 1.21187 0.98975 0.95615 0.97438 1.19515 0.98919 0.95693 0.93935 1.20704 0.90326 0.95381 1.06285 1.21142 0.90749 0.83370 0.75934 1.90646 1.71660 1.33225 1.52742 1.49377 1.07608 1.05696 1.70244 1.21737 0.97931 0.86400 0.97935 1.21949 0.99027 1.00443 0.96683 1.21541 0.89244 0.89071 0.97101 0.92404 1.22558 1.00103 0.96431 0.96085 1.22589 1.00834 0.95347 0.98530 1.20777 0.97150 0.91205 0.84477 0.93515 1.23769 0.75856 1.03073 0.96938 1.45199 1.39874 1.39767 1.07827 1.19121 1.14114 1.10671 0.90192 0.90922 1.25245 1.00271 1.00877 0.99091 1.69965 1.26957 1.36584 1.24640 0.85439 0.76708 0.78761 0.80162 1.20076 1.22606 1.22198 1.21129 0.99666 0.95914 0.97557 1.21172 1.00517 0.94406 0.98637 0.93040 0.90934 0.92458 0.90953 0.90188 0.83987 0.84977 0.85296 0.87606 0.87102 0.88670 0.88003 0.95363 0.87497 0.92266 0.88616 0.91393 0.90175 0.95404 0.95018 0.87241 0.85193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.89 71.98 0.71 -1.40 16 2 C -0.08 -1.55 6.06 29.85 0.18 -1.36 16 3 C -0.09 -2.34 5.13 -19.87 -0.10 -2.44 16 4 C -0.12 -3.13 9.70 22.27 0.22 -2.92 16 5 C -0.11 -3.21 9.70 22.27 0.22 -2.99 16 6 C -0.08 -2.53 4.37 -19.87 -0.09 -2.62 16 7 C -0.09 -2.60 4.33 29.10 0.13 -2.47 16 8 C 0.50 20.73 7.70 87.66 0.68 21.41 16 9 O -0.60 -31.73 15.78 -3.05 -0.05 -31.77 16 10 N -0.60 -23.49 2.96 -810.09 -2.40 -25.89 16 11 C 0.08 2.28 4.98 86.24 0.43 2.71 16 12 C -0.14 -4.09 5.15 29.66 0.15 -3.93 16 13 C 0.14 4.76 4.05 44.60 0.18 4.94 16 14 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 15 C -0.11 -3.10 6.10 31.60 0.19 -2.91 16 16 C -0.14 -4.27 5.76 30.81 0.18 -4.09 16 17 C 0.17 7.65 2.38 44.49 0.11 7.75 16 18 H 0.05 2.52 6.57 -2.39 -0.02 2.51 16 19 C 0.13 5.96 5.51 85.06 0.47 6.43 16 20 N -0.60 -28.56 2.57 -646.20 -1.66 -30.22 16 21 C -0.21 -11.66 10.31 84.03 0.87 -10.79 16 22 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 23 C -0.06 -3.57 5.36 84.86 0.45 -3.11 16 24 N -0.93 -55.68 8.03 21.65 0.17 -55.50 16 25 Si 0.96 48.41 29.55 68.60 2.03 50.44 16 26 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 27 H -0.30 -15.46 7.11 99.48 0.71 -14.75 16 28 H -0.29 -15.04 7.11 99.48 0.71 -14.33 16 29 C -0.12 -4.04 9.70 22.27 0.22 -3.83 16 30 C -0.13 -3.69 9.70 22.27 0.22 -3.47 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 1.31 8.09 -2.39 -0.02 1.29 16 35 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 36 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 37 H 0.13 3.18 8.06 -2.91 -0.02 3.15 16 38 H 0.13 2.80 7.34 -2.38 -0.02 2.78 16 39 H 0.11 2.90 8.05 -2.38 -0.02 2.88 16 40 H 0.11 2.75 3.46 -2.39 -0.01 2.74 16 41 H 0.10 1.95 6.25 -2.39 -0.01 1.94 16 42 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.03 0.98 8.14 -2.39 -0.02 0.97 16 44 H 0.11 2.01 7.90 -2.38 -0.02 1.99 16 45 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.10 2.58 4.94 -2.38 -0.01 2.57 16 47 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.08 4.80 5.09 -2.38 -0.01 4.78 16 49 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 51 H 0.11 3.60 8.06 -2.91 -0.02 3.57 16 52 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -76.52 393.56 4.39 -72.13 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.90 Total: 25.90 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 5.40 Total: -5.09 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -3.89 Total: -111.62 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.05 Total: -31.77 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 2.03 Total: 50.44 kcal Total: -76.52 4.39 -72.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045856554.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.952 kcal (2) G-P(sol) polarization free energy of solvation -76.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds