Wall clock time and date at job start Wed Apr 1 2020 02:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 110.88623 * 2 1 4 4 C 1.34777 * 119.99894 * 62.42745 * 3 2 1 5 5 O 1.21281 * 119.99998 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99839 * 179.72271 * 4 3 2 7 7 C 1.51592 * 108.49459 * 305.14406 * 6 4 3 8 8 C 1.53180 * 110.93201 * 170.57174 * 7 6 4 9 9 C 1.51461 * 108.41932 * 85.61224 * 8 7 6 10 10 C 1.38384 * 119.53012 * 109.35279 * 9 8 7 11 11 C 1.38293 * 119.62041 * 179.97438 * 10 9 8 12 12 C 1.38252 * 120.05453 * 0.02562 * 11 10 9 13 13 C 1.38291 * 120.05936 * 359.95133 * 12 11 10 14 14 C 1.37045 * 120.14760 * 289.30246 * 9 8 7 15 15 C 1.51464 * 120.15747 * 359.97438 * 14 9 8 16 16 C 1.51597 * 108.48729 * 180.27733 * 6 4 3 17 17 C 1.55162 * 111.03528 * 236.10221 * 2 1 3 18 18 C 1.54327 * 102.94003 * 206.41197 * 17 2 1 19 19 N 1.47021 * 107.27190 * 22.18527 * 18 17 2 20 20 C 1.36934 * 125.64658 * 181.02283 * 19 18 17 21 21 H 1.08008 * 120.00172 * 173.94738 * 20 19 18 22 22 C 1.38810 * 120.00270 * 353.94968 * 20 19 18 23 23 N 1.31620 * 120.00080 * 6.83105 * 22 20 19 24 24 Si 1.86807 * 120.00170 * 186.82650 * 22 20 19 25 25 H 1.48499 * 109.46866 * 94.98812 * 24 22 20 26 26 H 1.48498 * 109.47052 * 214.98455 * 24 22 20 27 27 H 1.48501 * 109.46826 * 334.98534 * 24 22 20 28 28 C 1.47426 * 108.70500 * 1.06682 * 19 18 17 29 29 H 1.09000 * 109.46749 * 60.69825 * 1 2 3 30 30 H 1.09006 * 109.46930 * 180.69796 * 1 2 3 31 31 H 1.08994 * 109.46774 * 300.69845 * 1 2 3 32 32 H 0.97003 * 120.00203 * 242.42868 * 3 2 1 33 33 H 1.08998 * 108.42453 * 62.64174 * 6 4 3 34 34 H 1.08996 * 109.18469 * 290.96796 * 7 6 4 35 35 H 1.09002 * 109.18045 * 50.21113 * 7 6 4 36 36 H 1.09006 * 109.65048 * 325.93816 * 8 7 6 37 37 H 1.08998 * 109.66286 * 205.29474 * 8 7 6 38 38 H 1.08004 * 120.18760 * 359.97438 * 10 9 8 39 39 H 1.08000 * 119.97178 * 180.02562 * 11 10 9 40 40 H 1.08005 * 119.97073 * 179.97438 * 12 11 10 41 41 H 1.08010 * 120.19181 * 180.02562 * 13 12 11 42 42 H 1.09000 * 109.63773 * 311.04594 * 15 14 9 43 43 H 1.08999 * 109.63969 * 190.42608 * 15 14 9 44 44 H 1.08994 * 109.18989 * 309.78502 * 16 6 4 45 45 H 1.09003 * 109.18692 * 69.03738 * 16 6 4 46 46 H 1.09004 * 110.71599 * 324.76816 * 17 2 1 47 47 H 1.08994 * 110.72755 * 88.04603 * 17 2 1 48 48 H 1.08998 * 109.87726 * 262.77211 * 18 17 2 49 49 H 1.08997 * 109.88658 * 141.60699 * 18 17 2 50 50 H 0.96999 * 120.00148 * 180.02562 * 23 22 20 51 51 H 1.09004 * 110.36457 * 217.02989 * 28 19 18 52 52 H 1.09002 * 110.36754 * 94.70547 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7878 2.1909 1.0346 5 8 1.1177 1.7975 1.9659 6 6 2.3303 3.5969 1.0376 7 6 3.8335 3.5326 0.8525 8 6 4.4156 4.9293 0.6138 9 6 4.6776 5.5748 1.9587 10 6 5.9814 5.7560 2.3859 11 6 6.2227 6.3457 3.6133 12 6 5.1655 6.7503 4.4069 13 6 3.8648 6.5670 3.9744 14 6 3.6297 5.9769 2.7450 15 6 2.2042 5.7783 2.2730 16 6 1.8844 4.2815 2.3145 17 6 2.0870 -0.8077 -1.2021 18 6 3.4683 -1.2732 -0.6953 19 7 3.4275 -1.2420 0.7740 20 6 4.4643 -1.5651 1.6082 21 1 4.3666 -1.4169 2.6736 22 6 5.6409 -2.0830 1.0846 23 7 5.8128 -2.1385 -0.2191 24 14 6.9806 -2.7011 2.2304 25 1 6.8347 -4.1671 2.4170 26 1 8.3112 -2.4073 1.6401 27 1 6.8608 -2.0203 3.5447 28 6 2.0853 -0.8063 1.2005 29 1 -0.3633 0.5030 -0.8962 30 1 -0.3633 -1.0277 0.0125 31 1 -0.3633 0.5246 0.8836 32 1 2.5885 1.6832 -0.7447 33 1 1.9025 4.1329 0.1904 34 1 4.2864 3.1034 1.7462 35 1 4.0621 2.8983 -0.0039 36 1 3.7031 5.5321 0.0507 37 1 5.3500 4.8472 0.0586 38 1 6.8056 5.4386 1.7643 39 1 7.2380 6.4902 3.9521 40 1 5.3555 7.2103 5.3655 41 1 3.0372 6.8827 4.5925 42 1 2.1016 6.1471 1.2524 43 1 1.5221 6.3170 2.9307 44 1 0.8095 4.1481 2.4361 45 1 2.3988 3.8286 3.1622 46 1 1.4481 -1.6633 -1.4209 47 1 2.1930 -0.1698 -2.0795 48 1 4.2432 -0.5985 -1.0591 49 1 3.6666 -2.2884 -1.0392 50 1 6.6348 -2.5007 -0.5850 51 1 2.1554 -0.1715 2.0839 52 1 1.4523 -1.6704 1.4025 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046433249.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:54 Heat of formation + Delta-G solvation = -2.236295 kcal Electronic energy + Delta-G solvation = -31217.072804 eV Core-core repulsion = 27374.011014 eV Total energy + Delta-G solvation = -3843.061790 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 7.86 seconds Orbital eigenvalues (eV) -40.54690 -39.55195 -37.54332 -35.90710 -33.95683 -33.12731 -32.12478 -31.23717 -29.91452 -29.53580 -28.63979 -26.25944 -25.61793 -24.01253 -23.64451 -22.52978 -21.66851 -20.32437 -20.12251 -19.68972 -18.89642 -17.30753 -16.76875 -16.48710 -15.58732 -15.33912 -15.13551 -14.91309 -14.62717 -14.34433 -13.91982 -13.79376 -13.74331 -13.45385 -13.14342 -13.03399 -12.83526 -12.68584 -12.39028 -12.12189 -11.98631 -11.88425 -11.71446 -11.70109 -11.60558 -11.44803 -10.98473 -10.89970 -10.84786 -10.70067 -10.65257 -10.43818 -10.33119 -10.31399 -10.04383 -9.95891 -9.62513 -9.10494 -8.80978 -8.59918 -8.56639 -8.46562 -6.75723 -5.69469 -2.99705 1.35227 1.35482 3.03861 3.42088 3.48089 3.49553 3.57424 3.73474 4.53559 4.53697 4.65120 4.78825 4.87061 4.89639 4.94911 5.02063 5.13158 5.22378 5.30269 5.39840 5.41899 5.46376 5.49699 5.55988 5.58753 5.64182 5.69817 5.71662 5.73934 5.77045 5.97259 6.03062 6.04760 6.12139 6.16091 6.17863 6.19661 6.33269 6.35967 6.38398 6.43028 6.47423 6.49797 6.58579 6.67654 6.72116 6.87876 6.99372 7.20912 7.54696 7.61940 7.82953 7.98677 8.29148 8.68242 9.26495 9.86874 10.53702 11.43040 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009574 B = 0.003908 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.769673 B = 7163.300268 C = 9133.210309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.156 3.844 3 N -0.702 5.702 4 C 0.517 3.483 5 O -0.541 6.541 6 C -0.100 4.100 7 C -0.107 4.107 8 C -0.078 4.078 9 C -0.076 4.076 10 C -0.114 4.114 11 C -0.125 4.125 12 C -0.126 4.126 13 C -0.118 4.118 14 C -0.077 4.077 15 C -0.079 4.079 16 C -0.094 4.094 17 C -0.147 4.147 18 C 0.178 3.822 19 N -0.602 5.602 20 C -0.220 4.220 21 H 0.075 0.925 22 C -0.008 4.008 23 N -0.922 5.922 24 Si 0.906 3.094 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.132 3.868 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.396 0.604 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.041 0.959 49 H 0.045 0.955 50 H 0.250 0.750 51 H 0.055 0.945 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.276 18.354 -0.441 19.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.069 3.931 3 N -0.352 5.352 4 C 0.303 3.697 5 O -0.419 6.419 6 C -0.121 4.121 7 C -0.145 4.145 8 C -0.115 4.115 9 C -0.076 4.076 10 C -0.132 4.132 11 C -0.143 4.143 12 C -0.144 4.144 13 C -0.136 4.136 14 C -0.077 4.077 15 C -0.116 4.116 16 C -0.132 4.132 17 C -0.186 4.186 18 C 0.053 3.947 19 N -0.328 5.328 20 C -0.349 4.349 21 H 0.093 0.907 22 C -0.203 4.203 23 N -0.571 5.571 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C 0.005 3.995 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.230 0.770 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.059 0.941 49 H 0.063 0.937 50 H 0.061 0.939 51 H 0.073 0.927 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.539 17.957 0.208 19.111 hybrid contribution 1.257 -0.328 0.234 1.320 sum -5.282 17.629 0.442 18.408 Atomic orbital electron populations 1.21982 0.94567 1.02044 1.02109 1.21464 0.92408 0.81109 0.98097 1.45840 1.54143 1.12629 1.22595 1.20530 0.79967 0.87180 0.81988 1.90634 1.39686 1.76668 1.34869 1.20891 0.96988 0.93811 1.00418 1.21289 0.92990 0.96499 1.03732 1.20833 1.01709 0.95433 0.93501 1.19667 0.92774 0.98390 0.96801 1.21167 0.96211 0.99282 0.96581 1.21123 0.98922 0.99435 0.94845 1.21106 0.92854 1.00777 0.99654 1.21107 0.96789 0.99882 0.95824 1.19668 0.95336 0.98191 0.94553 1.20838 0.92309 0.96820 1.01627 1.21071 1.02142 0.93099 0.96901 1.23223 1.00525 0.98890 0.95920 1.21139 0.89878 0.99848 0.83793 1.44424 1.07563 1.79122 1.01708 1.19053 0.91925 1.34440 0.89442 0.90702 1.24752 0.98084 1.01566 0.95940 1.69959 1.26330 1.51376 1.09400 0.86171 0.81359 0.78935 0.79830 1.21677 1.21848 1.20705 1.21875 0.87468 0.94822 0.95313 0.93251 0.91979 0.91094 0.76968 0.89388 0.90744 0.90607 0.90638 0.90590 0.85980 0.86373 0.86443 0.86187 0.90731 0.90904 0.90509 0.91097 0.90992 0.91881 0.94096 0.93656 0.93931 0.92671 0.95932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.62 37.16 0.32 -1.96 16 2 C 0.16 2.75 0.82 -129.67 -0.11 2.65 16 3 N -0.70 -11.16 4.95 -45.63 -0.23 -11.38 16 4 C 0.52 8.34 6.53 -10.98 -0.07 8.27 16 5 O -0.54 -10.45 12.47 5.56 0.07 -10.38 16 6 C -0.10 -1.23 2.02 -93.19 -0.19 -1.42 16 7 C -0.11 -1.36 4.86 -27.35 -0.13 -1.50 16 8 C -0.08 -0.81 5.47 -27.42 -0.15 -0.96 16 9 C -0.08 -0.89 4.98 -104.63 -0.52 -1.41 16 10 C -0.11 -1.32 9.69 -39.51 -0.38 -1.71 16 11 C -0.13 -1.36 10.05 -39.56 -0.40 -1.76 16 12 C -0.13 -1.33 10.05 -39.56 -0.40 -1.72 16 13 C -0.12 -1.28 9.69 -39.51 -0.38 -1.66 16 14 C -0.08 -0.88 4.98 -104.63 -0.52 -1.40 16 15 C -0.08 -0.78 5.46 -27.45 -0.15 -0.93 16 16 C -0.09 -1.15 4.32 -27.38 -0.12 -1.27 16 17 C -0.15 -2.60 5.99 -24.89 -0.15 -2.75 16 18 C 0.18 4.19 5.37 -3.06 -0.02 4.18 16 19 N -0.60 -15.46 3.39 -170.07 -0.58 -16.04 16 20 C -0.22 -6.27 10.26 -15.06 -0.15 -6.42 16 21 H 0.08 2.13 7.84 -52.48 -0.41 1.72 16 22 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 23 N -0.92 -26.88 10.36 55.49 0.58 -26.30 16 24 Si 0.91 22.52 29.56 -169.99 -5.02 17.50 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 28 C 0.13 2.93 6.11 -2.53 -0.02 2.92 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 31 H 0.07 1.18 6.45 -51.93 -0.34 0.85 16 32 H 0.40 5.54 7.42 -40.82 -0.30 5.24 16 33 H 0.09 0.88 7.82 -51.93 -0.41 0.47 16 34 H 0.07 1.17 7.85 -51.93 -0.41 0.77 16 35 H 0.08 0.98 6.86 -51.93 -0.36 0.62 16 36 H 0.08 0.67 6.90 -51.93 -0.36 0.31 16 37 H 0.08 0.74 7.91 -51.93 -0.41 0.33 16 38 H 0.12 1.26 7.97 -52.48 -0.42 0.84 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 40 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 41 H 0.12 1.07 7.97 -52.48 -0.42 0.65 16 42 H 0.07 0.65 6.90 -51.93 -0.36 0.29 16 43 H 0.07 0.63 7.91 -51.93 -0.41 0.22 16 44 H 0.08 0.96 7.68 -51.93 -0.40 0.57 16 45 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 46 H 0.07 1.20 8.04 -51.93 -0.42 0.79 16 47 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 48 H 0.04 1.04 7.55 -51.93 -0.39 0.65 16 49 H 0.05 1.20 7.37 -51.93 -0.38 0.82 16 50 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 51 H 0.06 1.33 6.32 -51.93 -0.33 1.01 16 52 H 0.02 0.51 8.03 -51.93 -0.42 0.10 16 LS Contribution 394.21 15.07 5.94 5.94 Total: -1.00 -32.46 394.21 -11.46 -43.91 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -8.58 Total: 5.94 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -3.63 Total: -9.18 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.23 Total: -53.73 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.07 Total: -10.38 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.46 -11.46 -43.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046433249.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.679 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.86 seconds