Wall clock time and date at job start Wed Apr 1 2020 03:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.46811 * 2 1 4 4 C 1.38252 * 119.99819 * 265.18466 * 3 2 1 5 5 C 1.38214 * 119.99953 * 180.23228 * 4 3 2 6 6 C 1.38261 * 119.99604 * 359.81731 * 5 4 3 7 7 C 1.38204 * 120.00280 * 359.97438 * 6 5 4 8 8 C 1.38210 * 119.99813 * 85.00248 * 3 2 1 9 9 C 1.50704 * 120.00351 * 359.97438 * 8 3 2 10 10 H 1.09004 * 115.55776 * 334.04081 * 9 8 3 11 11 C 1.53065 * 117.49388 * 188.33077 * 9 8 3 12 12 C 1.52995 * 117.49908 * 119.72691 * 9 8 3 13 13 H 1.09007 * 117.49994 * 359.97438 * 12 9 8 14 14 C 1.50698 * 117.49878 * 214.97900 * 12 9 8 15 15 O 1.21281 * 120.00002 * 0.09406 * 14 12 9 16 16 N 1.34782 * 119.99972 * 180.08596 * 14 12 9 17 17 C 1.46499 * 119.99645 * 179.97438 * 16 14 12 18 18 C 1.53006 * 110.88689 * 59.30521 * 17 16 14 19 19 C 1.55154 * 111.03617 * 183.20536 * 17 16 14 20 20 C 1.54326 * 102.94329 * 82.58584 * 19 17 16 21 21 N 1.47024 * 107.26637 * 22.19553 * 20 19 17 22 22 C 1.36940 * 125.64510 * 181.02231 * 21 20 19 23 23 H 1.07997 * 119.99779 * 180.02562 * 22 21 20 24 24 C 1.38814 * 120.00041 * 0.04137 * 22 21 20 25 25 N 1.31618 * 119.99891 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 119.99858 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47509 * 60.00191 * 26 24 22 28 28 H 1.48506 * 109.47028 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47084 * 299.99722 * 26 24 22 30 30 C 1.47418 * 108.70570 * 1.05952 * 21 20 19 31 31 H 1.09003 * 109.46814 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47079 * 299.99552 * 1 2 3 33 33 H 1.08999 * 109.47366 * 59.99956 * 1 2 3 34 34 H 1.09003 * 109.47556 * 240.00216 * 2 1 3 35 35 H 1.08999 * 109.47366 * 120.00044 * 2 1 3 36 36 H 1.07999 * 120.00217 * 0.02562 * 4 3 2 37 37 H 1.08001 * 120.00530 * 179.78994 * 5 4 3 38 38 H 1.08006 * 119.99733 * 179.97438 * 6 5 4 39 39 H 1.08005 * 120.00434 * 179.97438 * 7 6 5 40 40 H 1.08999 * 117.51475 * 145.03456 * 11 9 8 41 41 H 1.09003 * 117.49786 * 359.97438 * 11 9 8 42 42 H 0.96990 * 119.99843 * 0.02562 * 16 14 12 43 43 H 1.09001 * 109.47002 * 297.56695 * 18 17 16 44 44 H 1.08993 * 109.46955 * 57.57132 * 18 17 16 45 45 H 1.09000 * 109.47050 * 177.56961 * 18 17 16 46 46 H 1.08997 * 110.72608 * 200.95393 * 19 17 16 47 47 H 1.08999 * 110.72184 * 324.22683 * 19 17 16 48 48 H 1.08996 * 109.88725 * 262.77774 * 20 19 17 49 49 H 1.09001 * 110.00798 * 141.67758 * 20 19 17 50 50 H 0.97001 * 120.00016 * 180.02562 * 25 24 22 51 51 H 1.09003 * 110.36751 * 217.03565 * 30 21 20 52 52 H 1.08999 * 110.46166 * 94.75728 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3574 2.0391 -1.1931 5 6 2.8226 3.3406 -1.1927 6 6 2.9592 4.0255 0.0005 7 6 2.6300 3.4089 1.1928 8 6 2.1642 2.1072 1.1924 9 6 1.8054 1.4348 2.4926 10 1 1.0701 0.6334 2.4203 11 6 1.7852 2.3014 3.7542 12 6 2.9106 1.2872 3.5401 13 1 3.8975 1.6759 3.2888 14 6 2.8993 0.0449 4.3931 15 8 2.0363 -0.7922 4.2340 16 7 3.8485 -0.1359 5.3329 17 6 3.8371 -1.3433 6.1625 18 6 3.9440 -2.6007 5.2972 19 6 4.9683 -1.3007 7.2235 20 6 4.3507 -0.4495 8.3531 21 7 2.8898 -0.5201 8.2038 22 6 1.9747 0.1168 8.9988 23 1 0.9184 0.0005 8.8063 24 6 2.4047 0.9123 10.0521 25 7 3.6920 1.0539 10.2868 26 14 1.1563 1.7804 11.1370 27 1 0.2773 0.7734 11.7838 28 1 1.8666 2.5617 12.1813 29 1 0.3328 2.6970 10.3083 30 6 2.5733 -1.3906 7.0570 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.2510 1.5040 -2.1251 37 1 3.0798 3.8225 -2.1244 38 1 3.3231 5.0424 0.0009 39 1 2.7371 3.9438 2.1250 40 1 1.0367 2.0701 4.5120 41 1 2.0320 3.3573 3.6434 42 1 4.5385 0.5337 5.4603 43 1 3.0778 -2.6632 4.6385 44 1 4.8534 -2.5533 4.6983 45 1 3.9769 -3.4814 5.9386 46 1 5.2009 -2.3041 7.5799 47 1 5.8581 -0.8179 6.8195 48 1 4.6832 0.5845 8.2622 49 1 4.6438 -0.8491 9.3239 50 1 3.9925 1.6094 11.0230 51 1 1.7101 -1.0048 6.5146 52 1 2.3844 -2.4101 7.3932 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046578039.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:41 Heat of formation + Delta-G solvation = 30.442416 kcal Electronic energy + Delta-G solvation = -30405.172796 eV Core-core repulsion = 26563.528060 eV Total energy + Delta-G solvation = -3841.644735 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.44832 -39.53577 -37.66477 -36.00491 -34.33399 -33.87517 -31.86974 -30.72195 -29.93245 -29.45790 -28.65675 -25.67533 -24.81212 -24.00782 -23.89513 -23.34101 -21.17993 -20.66128 -20.21221 -19.71289 -18.97952 -17.45834 -16.91804 -16.43761 -15.74314 -15.48917 -15.13559 -14.71510 -14.62032 -14.27791 -14.15888 -13.96005 -13.67021 -13.61624 -13.32901 -13.19420 -12.80659 -12.59956 -12.28254 -12.08357 -11.95554 -11.88630 -11.82257 -11.76716 -11.64781 -11.50210 -11.00746 -10.90161 -10.88563 -10.85493 -10.61659 -10.41119 -10.34489 -10.31276 -10.09145 -9.95969 -9.63715 -9.25244 -8.92060 -8.62323 -8.58794 -8.48316 -6.77902 -5.68916 -3.00653 1.14730 1.23411 2.83478 3.36630 3.42007 3.46204 3.47396 3.62810 4.07173 4.49368 4.52547 4.62373 4.67960 4.81140 4.84716 4.91373 5.02769 5.03379 5.14507 5.26277 5.26591 5.37571 5.39411 5.41849 5.44929 5.50683 5.64185 5.69372 5.75290 5.75561 5.85761 5.88415 5.92668 6.03388 6.05096 6.05892 6.16162 6.17133 6.19244 6.35441 6.38602 6.40551 6.42462 6.56556 6.57498 6.71055 6.83891 6.85426 7.17635 7.56411 7.58578 7.81804 7.97518 8.28386 8.65008 9.25546 9.85753 10.52114 11.43071 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.002819 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.982881 B = 9930.911025 C =10751.496198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.070 4.070 4 C -0.118 4.118 5 C -0.124 4.124 6 C -0.124 4.124 7 C -0.117 4.117 8 C -0.046 4.046 9 C -0.089 4.089 10 H 0.129 0.871 11 C -0.142 4.142 12 C -0.173 4.173 13 H 0.120 0.880 14 C 0.547 3.453 15 O -0.542 6.542 16 N -0.696 5.696 17 C 0.157 3.843 18 C -0.149 4.149 19 C -0.147 4.147 20 C 0.178 3.822 21 N -0.602 5.602 22 C -0.221 4.221 23 H 0.075 0.925 24 C -0.010 4.010 25 N -0.925 5.925 26 Si 0.910 3.090 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C 0.133 3.867 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.398 0.602 43 H 0.073 0.927 44 H 0.048 0.952 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.045 0.955 49 H 0.043 0.957 50 H 0.251 0.749 51 H 0.052 0.948 52 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.477 1.796 -22.160 22.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.070 4.070 4 C -0.136 4.136 5 C -0.142 4.142 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.046 4.046 9 C -0.108 4.108 10 H 0.147 0.853 11 C -0.179 4.179 12 C -0.194 4.194 13 H 0.138 0.862 14 C 0.333 3.667 15 O -0.420 6.420 16 N -0.345 5.345 17 C 0.070 3.930 18 C -0.208 4.208 19 C -0.186 4.186 20 C 0.053 3.947 21 N -0.329 5.329 22 C -0.350 4.350 23 H 0.093 0.907 24 C -0.205 4.205 25 N -0.573 5.573 26 Si 0.741 3.259 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.213 1.213 30 C 0.006 3.994 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.232 0.768 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.082 0.918 48 H 0.063 0.937 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.070 0.930 52 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.872 1.322 -22.046 22.102 hybrid contribution -0.071 0.989 0.784 1.264 sum 0.801 2.311 -21.261 21.401 Atomic orbital electron populations 1.21740 0.94612 1.01892 1.02086 1.20593 0.96364 0.92525 1.03215 1.19739 0.98643 0.96259 0.92353 1.21005 1.00121 0.95192 0.97329 1.21107 1.00214 0.94882 0.97997 1.21089 1.00677 0.99888 0.92510 1.21099 0.99371 0.94599 0.98431 1.19029 0.99024 0.93683 0.92913 1.21133 1.00650 1.01991 0.87000 0.85289 1.23134 0.99509 0.96181 0.99095 1.22335 0.96633 0.98334 1.02143 0.86228 1.19394 0.81148 0.86271 0.79903 1.90628 1.36920 1.44727 1.69704 1.45718 1.30279 1.22938 1.35604 1.21475 0.98155 0.83848 0.89489 1.22000 1.02233 0.96385 1.00182 1.23227 0.96492 1.01716 0.97130 1.21145 0.83193 0.96808 0.93555 1.44423 1.01986 1.54602 1.31844 1.19004 0.88027 1.21379 1.06558 0.90712 1.24755 0.96182 1.00544 0.99044 1.69937 1.11965 1.43269 1.32127 0.86219 0.80162 0.79376 0.80149 1.21235 1.21656 1.21266 1.21858 0.95043 0.94279 0.88201 0.92274 0.92222 0.92866 0.91316 0.90094 0.86218 0.86313 0.86190 0.85756 0.87407 0.87661 0.76776 0.90768 0.93246 0.91992 0.90936 0.91804 0.93693 0.93868 0.93843 0.93004 0.95843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.74 37.16 0.36 -1.00 16 2 C -0.09 -0.89 5.38 -27.88 -0.15 -1.04 16 3 C -0.07 -0.74 5.13 -104.62 -0.54 -1.28 16 4 C -0.12 -1.12 9.68 -39.58 -0.38 -1.50 16 5 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 6 C -0.12 -1.14 10.05 -39.59 -0.40 -1.54 16 7 C -0.12 -1.20 9.30 -39.59 -0.37 -1.57 16 8 C -0.05 -0.52 5.61 -104.62 -0.59 -1.11 16 9 C -0.09 -1.10 4.66 -91.74 -0.43 -1.53 16 10 H 0.13 1.75 5.47 -51.93 -0.28 1.47 16 11 C -0.14 -1.77 9.57 -26.70 -0.26 -2.03 16 12 C -0.17 -2.27 5.82 -91.78 -0.53 -2.80 16 13 H 0.12 1.36 8.14 -51.93 -0.42 0.93 16 14 C 0.55 8.99 6.99 -10.98 -0.08 8.91 16 15 O -0.54 -10.31 13.10 5.56 0.07 -10.24 16 16 N -0.70 -11.40 5.18 -45.62 -0.24 -11.64 16 17 C 0.16 2.79 0.82 -129.67 -0.11 2.69 16 18 C -0.15 -2.32 8.53 37.16 0.32 -2.00 16 19 C -0.15 -2.62 5.98 -24.90 -0.15 -2.77 16 20 C 0.18 4.20 5.37 -3.06 -0.02 4.18 16 21 N -0.60 -15.43 3.39 -170.08 -0.58 -16.01 16 22 C -0.22 -6.26 10.28 -15.06 -0.15 -6.41 16 23 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 24 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 25 N -0.92 -26.95 10.31 55.49 0.57 -26.38 16 26 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 C 0.13 2.93 6.13 -2.53 -0.02 2.92 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.61 7.16 -51.93 -0.37 0.24 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 35 H 0.08 0.92 6.95 -51.93 -0.36 0.56 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.12 1.14 6.02 -52.48 -0.32 0.82 16 40 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.11 1.10 6.18 -51.93 -0.32 0.78 16 42 H 0.40 5.87 8.50 -40.82 -0.35 5.53 16 43 H 0.07 1.25 6.31 -51.93 -0.33 0.92 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 46 H 0.07 1.21 8.01 -51.93 -0.42 0.80 16 47 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 48 H 0.04 1.16 7.38 -51.93 -0.38 0.77 16 49 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 50 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 51 H 0.05 1.23 6.59 -51.93 -0.34 0.89 16 52 H 0.02 0.53 8.03 -51.93 -0.42 0.11 16 LS Contribution 406.79 15.07 6.13 6.13 Total: -1.00 -31.86 406.79 -11.50 -43.36 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -8.46 Total: 7.21 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -3.97 Total: -9.75 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.24 Total: -54.03 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.07 Total: -10.24 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.86 -11.50 -43.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046578039.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.799 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds