Wall clock time and date at job start Wed Apr 1 2020 03:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.46811 * 2 1 4 4 C 1.38252 * 119.99819 * 265.18466 * 3 2 1 5 5 C 1.38214 * 119.99953 * 180.23228 * 4 3 2 6 6 C 1.38261 * 119.99604 * 359.81731 * 5 4 3 7 7 C 1.38204 * 120.00280 * 359.97438 * 6 5 4 8 8 C 1.38210 * 119.99813 * 85.00248 * 3 2 1 9 9 C 1.50704 * 120.00351 * 359.97438 * 8 3 2 10 10 H 1.09004 * 115.55776 * 334.04081 * 9 8 3 11 11 C 1.53065 * 117.49388 * 188.33077 * 9 8 3 12 12 C 1.52995 * 117.49908 * 119.72691 * 9 8 3 13 13 H 1.09007 * 117.49994 * 359.97438 * 12 9 8 14 14 C 1.50698 * 117.49878 * 214.97900 * 12 9 8 15 15 O 1.21281 * 120.00002 * 0.09406 * 14 12 9 16 16 N 1.34782 * 119.99972 * 180.08596 * 14 12 9 17 17 C 1.46499 * 119.99645 * 179.97438 * 16 14 12 18 18 C 1.53006 * 110.88689 * 59.30521 * 17 16 14 19 19 C 1.55154 * 111.03617 * 183.20536 * 17 16 14 20 20 C 1.54326 * 102.94329 * 82.58584 * 19 17 16 21 21 N 1.47024 * 107.26637 * 22.19553 * 20 19 17 22 22 C 1.36940 * 125.64510 * 181.02231 * 21 20 19 23 23 H 1.07997 * 119.99779 * 180.02562 * 22 21 20 24 24 C 1.38814 * 120.00041 * 0.04137 * 22 21 20 25 25 N 1.31618 * 119.99891 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 119.99858 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47509 * 60.00191 * 26 24 22 28 28 H 1.48506 * 109.47028 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47084 * 299.99722 * 26 24 22 30 30 C 1.47418 * 108.70570 * 1.05952 * 21 20 19 31 31 H 1.09003 * 109.46814 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47079 * 299.99552 * 1 2 3 33 33 H 1.08999 * 109.47366 * 59.99956 * 1 2 3 34 34 H 1.09003 * 109.47556 * 240.00216 * 2 1 3 35 35 H 1.08999 * 109.47366 * 120.00044 * 2 1 3 36 36 H 1.07999 * 120.00217 * 0.02562 * 4 3 2 37 37 H 1.08001 * 120.00530 * 179.78994 * 5 4 3 38 38 H 1.08006 * 119.99733 * 179.97438 * 6 5 4 39 39 H 1.08005 * 120.00434 * 179.97438 * 7 6 5 40 40 H 1.08999 * 117.51475 * 145.03456 * 11 9 8 41 41 H 1.09003 * 117.49786 * 359.97438 * 11 9 8 42 42 H 0.96990 * 119.99843 * 0.02562 * 16 14 12 43 43 H 1.09001 * 109.47002 * 297.56695 * 18 17 16 44 44 H 1.08993 * 109.46955 * 57.57132 * 18 17 16 45 45 H 1.09000 * 109.47050 * 177.56961 * 18 17 16 46 46 H 1.08997 * 110.72608 * 200.95393 * 19 17 16 47 47 H 1.08999 * 110.72184 * 324.22683 * 19 17 16 48 48 H 1.08996 * 109.88725 * 262.77774 * 20 19 17 49 49 H 1.09001 * 110.00798 * 141.67758 * 20 19 17 50 50 H 0.97001 * 120.00016 * 180.02562 * 25 24 22 51 51 H 1.09003 * 110.36751 * 217.03565 * 30 21 20 52 52 H 1.08999 * 110.46166 * 94.75728 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3574 2.0391 -1.1931 5 6 2.8226 3.3406 -1.1927 6 6 2.9592 4.0255 0.0005 7 6 2.6300 3.4089 1.1928 8 6 2.1642 2.1072 1.1924 9 6 1.8054 1.4348 2.4926 10 1 1.0701 0.6334 2.4203 11 6 1.7852 2.3014 3.7542 12 6 2.9106 1.2872 3.5401 13 1 3.8975 1.6759 3.2888 14 6 2.8993 0.0449 4.3931 15 8 2.0363 -0.7922 4.2340 16 7 3.8485 -0.1359 5.3329 17 6 3.8371 -1.3433 6.1625 18 6 3.9440 -2.6007 5.2972 19 6 4.9683 -1.3007 7.2235 20 6 4.3507 -0.4495 8.3531 21 7 2.8898 -0.5201 8.2038 22 6 1.9747 0.1168 8.9988 23 1 0.9184 0.0005 8.8063 24 6 2.4047 0.9123 10.0521 25 7 3.6920 1.0539 10.2868 26 14 1.1563 1.7804 11.1370 27 1 0.2773 0.7734 11.7838 28 1 1.8666 2.5617 12.1813 29 1 0.3328 2.6970 10.3083 30 6 2.5733 -1.3906 7.0570 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.2510 1.5040 -2.1251 37 1 3.0798 3.8225 -2.1244 38 1 3.3231 5.0424 0.0009 39 1 2.7371 3.9438 2.1250 40 1 1.0367 2.0701 4.5120 41 1 2.0320 3.3573 3.6434 42 1 4.5385 0.5337 5.4603 43 1 3.0778 -2.6632 4.6385 44 1 4.8534 -2.5533 4.6983 45 1 3.9769 -3.4814 5.9386 46 1 5.2009 -2.3041 7.5799 47 1 5.8581 -0.8179 6.8195 48 1 4.6832 0.5845 8.2622 49 1 4.6438 -0.8491 9.3239 50 1 3.9925 1.6094 11.0230 51 1 1.7101 -1.0048 6.5146 52 1 2.3844 -2.4101 7.3932 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046578039.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:37 Heat of formation + Delta-G solvation = 13.781586 kcal Electronic energy + Delta-G solvation = -30405.895263 eV Core-core repulsion = 26563.528060 eV Total energy + Delta-G solvation = -3842.367203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.92 seconds Orbital eigenvalues (eV) -41.56332 -40.62451 -39.08480 -37.17842 -35.62614 -35.07452 -33.62492 -31.85425 -31.30174 -30.35511 -30.19011 -27.52799 -26.02527 -25.22387 -24.79994 -24.58911 -22.28292 -21.95970 -21.51585 -20.80457 -20.43059 -18.99132 -18.38367 -17.45556 -17.07178 -16.66530 -16.55580 -16.04601 -15.91259 -15.62505 -15.49720 -15.20254 -14.73623 -14.68552 -14.37884 -14.22670 -14.06785 -13.89623 -13.59390 -13.53926 -13.39580 -13.13436 -13.12086 -12.81882 -12.76120 -12.72658 -12.66876 -12.29080 -12.13536 -12.06528 -11.97631 -11.82297 -11.76069 -11.69769 -11.55827 -11.44255 -11.32739 -10.71279 -10.60863 -9.96526 -9.65302 -9.37771 -8.86990 -7.86106 -5.19874 0.39195 0.51646 1.43081 1.45618 1.52143 1.58162 2.19227 2.47769 2.71059 3.11321 3.31787 3.51005 3.59332 3.70405 3.75627 3.85602 3.92475 3.96799 4.04399 4.13436 4.15707 4.19215 4.27190 4.34784 4.50455 4.63307 4.63727 4.65956 4.68597 4.70549 4.74676 4.83553 4.86092 4.91291 4.93607 4.97783 5.02148 5.08243 5.09721 5.13329 5.17736 5.27465 5.35660 5.38230 5.41592 5.64354 5.64840 5.66110 5.70779 5.78265 5.80864 6.15143 6.19453 6.67364 7.11115 7.34871 7.76894 8.41467 9.23507 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.002819 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.982881 B = 9930.911025 C =10751.496198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.083 4.083 4 C -0.124 4.124 5 C -0.124 4.124 6 C -0.128 4.128 7 C -0.125 4.125 8 C -0.064 4.064 9 C -0.076 4.076 10 H 0.110 0.890 11 C -0.142 4.142 12 C -0.174 4.174 13 H 0.143 0.857 14 C 0.541 3.459 15 O -0.572 6.572 16 N -0.695 5.695 17 C 0.167 3.833 18 C -0.140 4.140 19 C -0.129 4.129 20 C 0.186 3.814 21 N -0.619 5.619 22 C -0.243 4.243 23 H 0.067 0.933 24 C -0.058 4.058 25 N -0.945 5.945 26 Si 0.973 3.027 27 H -0.281 1.281 28 H -0.289 1.289 29 H -0.280 1.280 30 C 0.130 3.870 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.083 0.917 41 H 0.130 0.870 42 H 0.407 0.593 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.097 0.903 48 H 0.018 0.982 49 H 0.008 0.992 50 H 0.248 0.752 51 H 0.027 0.973 52 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.571 2.623 -24.357 24.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 C -0.083 4.083 4 C -0.141 4.141 5 C -0.141 4.141 6 C -0.146 4.146 7 C -0.143 4.143 8 C -0.064 4.064 9 C -0.095 4.095 10 H 0.128 0.872 11 C -0.180 4.180 12 C -0.195 4.195 13 H 0.161 0.839 14 C 0.329 3.671 15 O -0.453 6.453 16 N -0.345 5.345 17 C 0.080 3.920 18 C -0.198 4.198 19 C -0.167 4.167 20 C 0.061 3.939 21 N -0.346 5.346 22 C -0.372 4.372 23 H 0.085 0.915 24 C -0.251 4.251 25 N -0.594 5.594 26 Si 0.802 3.198 27 H -0.207 1.207 28 H -0.215 1.215 29 H -0.206 1.206 30 C 0.004 3.996 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.156 0.844 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.150 0.850 40 H 0.102 0.898 41 H 0.148 0.852 42 H 0.243 0.757 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.109 0.891 47 H 0.115 0.885 48 H 0.036 0.964 49 H 0.026 0.974 50 H 0.057 0.943 51 H 0.046 0.954 52 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 1.973 2.142 -24.263 24.437 hybrid contribution -0.471 0.725 1.442 1.681 sum 1.502 2.867 -22.821 23.050 Atomic orbital electron populations 1.21713 0.94459 1.02088 1.01786 1.20553 0.96495 0.92487 1.02863 1.19884 0.99118 0.96488 0.92795 1.21268 0.99666 0.95701 0.97513 1.21465 0.99036 0.94632 0.98997 1.21398 1.00118 1.00890 0.92177 1.21259 0.99370 0.94214 0.99452 1.19008 1.00613 0.94420 0.92325 1.20984 0.99566 1.01246 0.87704 0.87230 1.23159 0.98619 0.97426 0.98755 1.22337 0.98045 0.96979 1.02162 0.83916 1.19956 0.80409 0.86905 0.79856 1.90614 1.37977 1.46066 1.70594 1.45727 1.30675 1.22903 1.35214 1.21339 0.95412 0.85683 0.89572 1.21915 1.02735 0.95303 0.99841 1.23102 0.97074 1.01837 0.94707 1.20936 0.82466 0.96225 0.94262 1.44662 1.02650 1.54754 1.32487 1.19266 0.88462 1.21999 1.07441 0.91471 1.25514 0.98041 1.01339 1.00251 1.70138 1.13365 1.43591 1.32299 0.85237 0.78043 0.78254 0.78305 1.20727 1.21481 1.20579 1.21956 0.96608 0.93173 0.87859 0.91865 0.93814 0.91766 0.89786 0.92225 0.84359 0.83825 0.84068 0.84978 0.89840 0.85228 0.75691 0.92369 0.90712 0.90759 0.89129 0.88486 0.96375 0.97375 0.94293 0.95419 0.96004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.74 71.98 0.70 -1.96 16 2 C -0.09 -1.68 5.38 29.85 0.16 -1.52 16 3 C -0.08 -1.67 5.13 -19.87 -0.10 -1.77 16 4 C -0.12 -2.04 9.68 22.27 0.22 -1.82 16 5 C -0.12 -1.82 10.05 22.27 0.22 -1.59 16 6 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 7 C -0.13 -2.34 9.30 22.27 0.21 -2.13 16 8 C -0.06 -1.38 5.61 -19.86 -0.11 -1.49 16 9 C -0.08 -1.91 4.66 -11.52 -0.05 -1.96 16 10 H 0.11 3.17 5.47 -2.39 -0.01 3.16 16 11 C -0.14 -3.59 9.57 30.62 0.29 -3.29 16 12 C -0.17 -4.52 5.82 -11.54 -0.07 -4.59 16 13 H 0.14 3.01 8.14 -2.38 -0.02 2.99 16 14 C 0.54 17.94 6.99 87.66 0.61 18.55 16 15 O -0.57 -22.51 13.10 -3.03 -0.04 -22.55 16 16 N -0.70 -22.37 5.18 -416.64 -2.16 -24.53 16 17 C 0.17 5.81 0.82 5.00 0.00 5.81 16 18 C -0.14 -4.08 8.53 71.98 0.61 -3.47 16 19 C -0.13 -4.39 5.98 31.78 0.19 -4.20 16 20 C 0.19 8.93 5.37 86.73 0.47 9.39 16 21 N -0.62 -32.63 3.39 -692.00 -2.35 -34.98 16 22 C -0.24 -14.14 10.28 84.03 0.86 -13.27 16 23 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 24 C -0.06 -3.35 5.49 84.86 0.47 -2.88 16 25 N -0.95 -56.33 10.31 21.65 0.22 -56.11 16 26 Si 0.97 46.65 29.55 68.60 2.03 48.67 16 27 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 28 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 29 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 30 C 0.13 5.88 6.13 86.86 0.53 6.41 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.04 0.93 7.16 -2.39 -0.02 0.92 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.33 8.05 -2.39 -0.02 1.31 16 35 H 0.06 1.40 6.95 -2.39 -0.02 1.38 16 36 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 38 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 39 H 0.13 2.15 6.02 -2.91 -0.02 2.13 16 40 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.13 2.57 6.18 -2.39 -0.01 2.56 16 42 H 0.41 11.52 8.50 -92.72 -0.79 10.73 16 43 H 0.06 1.92 6.31 -2.39 -0.02 1.91 16 44 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.07 1.99 8.11 -2.39 -0.02 1.97 16 46 H 0.09 2.81 8.01 -2.39 -0.02 2.79 16 47 H 0.10 2.71 8.07 -2.39 -0.02 2.69 16 48 H 0.02 0.95 7.38 -2.39 -0.02 0.93 16 49 H 0.01 0.44 7.50 -2.39 -0.02 0.42 16 50 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 51 H 0.03 1.37 6.59 -2.39 -0.02 1.35 16 52 H 0.02 1.00 8.03 -2.39 -0.02 0.98 16 Total: -1.00 -71.51 406.79 3.27 -68.24 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.13 Total: 28.84 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: 5.44 Total: -7.58 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -4.28 Total: -115.63 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.04 Total: -22.55 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -71.51 3.27 -68.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046578039.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.023 kcal (2) G-P(sol) polarization free energy of solvation -71.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.92 seconds