Wall clock time and date at job start Wed Apr 1 2020 03:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47344 * 2 1 4 4 C 1.38256 * 120.00079 * 264.99821 * 3 2 1 5 5 C 1.38216 * 119.99689 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.00131 * 0.02562 * 5 4 3 7 7 C 1.38212 * 119.99711 * 0.25806 * 6 5 4 8 8 C 1.38212 * 119.99617 * 85.02558 * 3 2 1 9 9 C 1.50706 * 119.99947 * 0.02562 * 8 3 2 10 10 H 1.08994 * 115.54822 * 334.27737 * 9 8 3 11 11 C 1.53005 * 117.49628 * 188.60818 * 9 8 3 12 12 C 1.53004 * 117.49932 * 119.98651 * 9 8 3 13 13 H 1.08997 * 117.49503 * 359.97438 * 12 9 8 14 14 C 1.50690 * 117.49740 * 214.97567 * 12 9 8 15 15 O 1.21281 * 120.00100 * 0.02562 * 14 12 9 16 16 N 1.34784 * 119.99817 * 179.97438 * 14 12 9 17 17 C 1.46497 * 119.99737 * 180.02562 * 16 14 12 18 18 C 1.53001 * 110.88594 * 303.87972 * 17 16 14 19 19 C 1.55161 * 111.00366 * 179.97438 * 17 16 14 20 20 C 1.54317 * 102.94370 * 277.42798 * 19 17 16 21 21 N 1.47026 * 107.27081 * 337.80682 * 20 19 17 22 22 C 1.36939 * 125.64700 * 178.89659 * 21 20 19 23 23 H 1.07994 * 119.99786 * 174.87733 * 22 21 20 24 24 C 1.38814 * 120.00008 * 354.87908 * 22 21 20 25 25 N 1.31617 * 119.99945 * 7.06966 * 24 22 21 26 26 Si 1.86797 * 119.99897 * 187.06236 * 24 22 21 27 27 H 1.48504 * 109.46757 * 94.98790 * 26 24 22 28 28 H 1.48490 * 109.47487 * 214.98615 * 26 24 22 29 29 H 1.48504 * 109.47262 * 334.99159 * 26 24 22 30 30 C 1.47425 * 108.70098 * 358.93994 * 21 20 19 31 31 H 1.08997 * 109.47347 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47012 * 300.00181 * 1 2 3 33 33 H 1.09011 * 109.47041 * 59.99425 * 1 2 3 34 34 H 1.09007 * 109.46898 * 240.00107 * 2 1 3 35 35 H 1.08997 * 109.46801 * 120.00701 * 2 1 3 36 36 H 1.07994 * 120.00248 * 0.02562 * 4 3 2 37 37 H 1.07998 * 119.99933 * 180.02562 * 5 4 3 38 38 H 1.07996 * 119.99898 * 179.97438 * 6 5 4 39 39 H 1.08003 * 120.00050 * 179.72250 * 7 6 5 40 40 H 1.08998 * 117.49978 * 359.97438 * 11 9 8 41 41 H 1.09000 * 117.49466 * 144.99531 * 11 9 8 42 42 H 0.96996 * 119.99780 * 359.97438 * 16 14 12 43 43 H 1.09001 * 109.47239 * 59.30542 * 18 17 16 44 44 H 1.09004 * 109.47126 * 179.30612 * 18 17 16 45 45 H 1.09002 * 109.46995 * 299.29782 * 18 17 16 46 46 H 1.09008 * 110.71788 * 35.79321 * 19 17 16 47 47 H 1.09002 * 110.72086 * 158.88322 * 19 17 16 48 48 H 1.09007 * 109.88140 * 97.21921 * 20 19 17 49 49 H 1.08996 * 109.88571 * 218.38419 * 20 19 17 50 50 H 0.97001 * 120.00094 * 180.02562 * 25 24 22 51 51 H 1.08997 * 110.36254 * 265.28937 * 30 21 20 52 52 H 1.09000 * 110.36653 * 142.97241 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3613 2.0377 -1.1928 5 6 2.8215 3.3410 -1.1927 6 6 2.9535 4.0275 0.0001 7 6 2.6303 3.4087 1.1930 8 6 2.1649 2.1068 1.1925 9 6 1.8075 1.4338 2.4927 10 1 1.0757 0.6294 2.4200 11 6 1.7814 2.3009 3.7531 12 6 2.9122 1.2920 3.5418 13 1 3.8975 1.6851 3.2914 14 6 2.9055 0.0505 4.3958 15 8 2.0457 -0.7901 4.2370 16 7 3.8556 -0.1263 5.3353 17 6 3.8494 -1.3336 6.1651 18 6 2.5112 -1.4904 6.8900 19 6 5.0299 -1.3226 7.1719 20 6 6.2113 -1.8408 6.3250 21 7 5.6429 -2.5947 5.1980 22 6 6.3595 -3.1999 4.2003 23 1 5.8528 -3.8013 3.4601 24 6 7.7371 -3.0404 4.1404 25 7 8.3715 -2.4260 5.1163 26 14 8.6906 -3.6981 2.6749 27 1 8.8772 -2.6128 1.6785 28 1 10.0173 -4.1883 3.1271 29 1 7.9352 -4.8156 2.0539 30 6 4.1736 -2.5903 5.3195 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5140 -0.8900 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 2.2577 1.5017 -2.1245 37 1 3.0780 3.8231 -2.1245 38 1 3.3136 5.0457 0.0002 39 1 2.7377 3.9434 2.1252 40 1 2.0231 3.3579 3.6419 41 1 1.0324 2.0667 4.5096 42 1 4.5438 0.5454 5.4614 43 1 1.7062 -1.5520 6.1577 44 1 2.5272 -2.4004 7.4898 45 1 2.3468 -0.6303 7.5393 46 1 5.2246 -0.3104 7.5268 47 1 4.8293 -1.9913 8.0089 48 1 6.7963 -1.0003 5.9513 49 1 6.8413 -2.4944 6.9282 50 1 9.3341 -2.3142 5.0743 51 1 3.8327 -3.4903 5.8312 52 1 3.7119 -2.5147 4.3350 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046578043.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:52 Heat of formation + Delta-G solvation = 30.674993 kcal Electronic energy + Delta-G solvation = -30571.240085 eV Core-core repulsion = 26729.605435 eV Total energy + Delta-G solvation = -3841.634650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.43924 -39.51300 -37.67784 -36.02589 -34.25977 -33.86645 -31.87509 -30.68540 -29.93927 -29.40029 -28.66131 -25.67087 -24.79410 -23.99801 -23.83738 -23.37770 -21.14829 -20.63464 -20.21290 -19.71858 -18.99720 -17.46428 -16.89447 -16.42561 -15.70477 -15.47440 -15.11847 -14.75175 -14.61708 -14.30383 -14.02420 -13.90521 -13.68697 -13.55975 -13.33156 -13.25004 -12.77105 -12.57267 -12.29511 -11.99610 -11.91531 -11.89363 -11.84911 -11.79435 -11.65338 -11.45773 -10.95804 -10.90801 -10.88304 -10.84478 -10.60389 -10.45002 -10.35088 -10.29327 -10.05567 -9.98261 -9.66100 -9.22941 -8.85651 -8.62644 -8.53438 -8.46916 -6.77999 -5.70500 -3.00975 1.20868 1.30317 2.80022 3.41203 3.43189 3.47462 3.48934 3.60820 4.03570 4.50130 4.52841 4.66589 4.72786 4.79415 4.86866 4.90794 5.04102 5.11378 5.13454 5.32348 5.33847 5.39036 5.41861 5.43443 5.50655 5.52948 5.59270 5.64630 5.74376 5.80159 5.89023 5.91694 5.94318 5.99836 6.04652 6.10892 6.16700 6.19098 6.23186 6.38966 6.41445 6.42526 6.44840 6.56238 6.63354 6.71332 6.82500 6.91876 7.16925 7.54863 7.59363 7.81977 7.97231 8.27795 8.63921 9.25013 9.85366 10.51879 11.41959 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009414 B = 0.003502 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.521979 B = 7992.912242 C = 9465.763002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.066 4.066 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.125 4.125 7 C -0.117 4.117 8 C -0.049 4.049 9 C -0.085 4.085 10 H 0.130 0.870 11 C -0.148 4.148 12 C -0.173 4.173 13 H 0.123 0.877 14 C 0.547 3.453 15 O -0.542 6.542 16 N -0.696 5.696 17 C 0.157 3.843 18 C -0.152 4.152 19 C -0.147 4.147 20 C 0.177 3.823 21 N -0.603 5.603 22 C -0.222 4.222 23 H 0.076 0.924 24 C -0.007 4.007 25 N -0.922 5.922 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.281 1.281 30 C 0.134 3.866 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.399 0.601 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.047 0.953 49 H 0.041 0.959 50 H 0.251 0.749 51 H 0.024 0.976 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.350 13.596 -4.848 20.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.130 4.130 3 C -0.066 4.066 4 C -0.136 4.136 5 C -0.141 4.141 6 C -0.143 4.143 7 C -0.135 4.135 8 C -0.049 4.049 9 C -0.103 4.103 10 H 0.147 0.853 11 C -0.185 4.185 12 C -0.194 4.194 13 H 0.141 0.859 14 C 0.333 3.667 15 O -0.420 6.420 16 N -0.345 5.345 17 C 0.070 3.930 18 C -0.210 4.210 19 C -0.186 4.186 20 C 0.052 3.948 21 N -0.329 5.329 22 C -0.351 4.351 23 H 0.094 0.906 24 C -0.203 4.203 25 N -0.570 5.570 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.206 1.206 30 C 0.007 3.993 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.233 0.767 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.082 0.918 47 H 0.091 0.909 48 H 0.065 0.935 49 H 0.060 0.940 50 H 0.061 0.939 51 H 0.042 0.958 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.719 12.932 -5.003 20.222 hybrid contribution 1.278 0.065 -0.732 1.474 sum -13.441 12.997 -5.734 19.557 Atomic orbital electron populations 1.21727 0.94690 1.01845 1.01856 1.20616 0.96212 0.92523 1.03627 1.19743 0.98348 0.96185 0.92358 1.21028 0.99942 0.95149 0.97434 1.21109 1.00060 0.94852 0.98033 1.21067 1.00781 0.99882 0.92536 1.21036 0.99629 0.94583 0.98279 1.18993 0.99315 0.93686 0.92869 1.21099 1.00632 1.01587 0.87009 0.85270 1.23101 0.99488 0.96314 0.99584 1.22381 0.96787 0.98024 1.02208 0.85911 1.19384 0.81327 0.86356 0.79642 1.90617 1.38166 1.44475 1.68781 1.45724 1.29856 1.22595 1.36290 1.21478 0.94841 0.85695 0.90937 1.22030 0.97666 1.01061 1.00251 1.23224 0.96539 1.00990 0.97799 1.21155 0.90560 0.95589 0.87503 1.44441 0.99196 1.62382 1.26894 1.19061 0.89301 1.23614 1.03089 0.90605 1.24762 0.96329 1.00961 0.98279 1.69961 1.07674 1.48133 1.31255 0.86159 0.79484 0.78248 0.82328 1.21729 1.21796 1.20646 1.21864 0.86445 0.93118 0.97894 0.92262 0.92416 0.92916 0.91125 0.89920 0.86139 0.86288 0.86230 0.85933 0.87724 0.87881 0.76702 0.90378 0.92032 0.93297 0.91792 0.90935 0.93522 0.94040 0.93892 0.95821 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.74 37.16 0.36 -1.09 16 2 C -0.09 -1.08 5.38 -27.88 -0.15 -1.23 16 3 C -0.07 -0.80 5.13 -104.63 -0.54 -1.34 16 4 C -0.12 -1.28 9.68 -39.58 -0.38 -1.66 16 5 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 6 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 7 C -0.12 -1.25 9.29 -39.58 -0.37 -1.62 16 8 C -0.05 -0.58 5.61 -104.62 -0.59 -1.17 16 9 C -0.08 -1.04 4.66 -91.76 -0.43 -1.47 16 10 H 0.13 1.74 5.47 -51.93 -0.28 1.46 16 11 C -0.15 -1.52 9.56 -26.73 -0.26 -1.78 16 12 C -0.17 -2.26 5.82 -91.77 -0.53 -2.80 16 13 H 0.12 1.57 8.14 -51.93 -0.42 1.14 16 14 C 0.55 8.96 6.99 -10.99 -0.08 8.88 16 15 O -0.54 -10.24 13.11 5.56 0.07 -10.16 16 16 N -0.70 -11.42 5.18 -45.63 -0.24 -11.66 16 17 C 0.16 2.80 0.83 -129.67 -0.11 2.69 16 18 C -0.15 -2.35 8.52 37.16 0.32 -2.03 16 19 C -0.15 -2.62 5.97 -24.90 -0.15 -2.77 16 20 C 0.18 4.18 5.37 -3.07 -0.02 4.16 16 21 N -0.60 -15.53 3.39 -170.08 -0.58 -16.11 16 22 C -0.22 -6.33 10.27 -15.06 -0.15 -6.49 16 23 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 24 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 25 N -0.92 -26.98 10.36 55.49 0.57 -26.40 16 26 Si 0.91 22.51 29.56 -169.99 -5.02 17.49 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 30 C 0.13 2.96 6.17 -2.53 -0.02 2.94 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.59 7.18 -51.93 -0.37 0.22 16 33 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 35 H 0.08 1.13 6.94 -51.93 -0.36 0.77 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 39 H 0.12 1.09 6.03 -52.48 -0.32 0.77 16 40 H 0.10 0.86 6.18 -51.93 -0.32 0.54 16 41 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.40 5.96 8.51 -40.82 -0.35 5.61 16 43 H 0.08 1.32 6.01 -51.93 -0.31 1.01 16 44 H 0.06 0.90 8.13 -51.93 -0.42 0.47 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.99 8.09 -51.92 -0.42 0.57 16 47 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 48 H 0.05 1.20 7.30 -51.93 -0.38 0.82 16 49 H 0.04 1.09 7.61 -51.93 -0.40 0.70 16 50 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 51 H 0.02 0.53 8.03 -51.93 -0.42 0.11 16 52 H 0.05 1.19 6.86 -51.93 -0.36 0.84 16 LS Contribution 406.94 15.07 6.13 6.13 Total: -1.00 -32.18 406.94 -11.50 -43.68 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -8.47 Total: 7.37 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -3.97 Total: -10.34 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.24 Total: -54.17 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.07 Total: -10.16 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.18 -11.50 -43.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046578043.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.354 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds