Wall clock time and date at job start Wed Apr 1 2020 03:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47344 * 2 1 4 4 C 1.38256 * 120.00079 * 264.99821 * 3 2 1 5 5 C 1.38216 * 119.99689 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.00131 * 0.02562 * 5 4 3 7 7 C 1.38212 * 119.99711 * 0.25806 * 6 5 4 8 8 C 1.38212 * 119.99617 * 85.02558 * 3 2 1 9 9 C 1.50706 * 119.99947 * 0.02562 * 8 3 2 10 10 H 1.08994 * 115.54822 * 334.27737 * 9 8 3 11 11 C 1.53005 * 117.49628 * 188.60818 * 9 8 3 12 12 C 1.53004 * 117.49932 * 119.98651 * 9 8 3 13 13 H 1.08997 * 117.49503 * 359.97438 * 12 9 8 14 14 C 1.50690 * 117.49740 * 214.97567 * 12 9 8 15 15 O 1.21281 * 120.00100 * 0.02562 * 14 12 9 16 16 N 1.34784 * 119.99817 * 179.97438 * 14 12 9 17 17 C 1.46497 * 119.99737 * 180.02562 * 16 14 12 18 18 C 1.53001 * 110.88594 * 303.87972 * 17 16 14 19 19 C 1.55161 * 111.00366 * 179.97438 * 17 16 14 20 20 C 1.54317 * 102.94370 * 277.42798 * 19 17 16 21 21 N 1.47026 * 107.27081 * 337.80682 * 20 19 17 22 22 C 1.36939 * 125.64700 * 178.89659 * 21 20 19 23 23 H 1.07994 * 119.99786 * 174.87733 * 22 21 20 24 24 C 1.38814 * 120.00008 * 354.87908 * 22 21 20 25 25 N 1.31617 * 119.99945 * 7.06966 * 24 22 21 26 26 Si 1.86797 * 119.99897 * 187.06236 * 24 22 21 27 27 H 1.48504 * 109.46757 * 94.98790 * 26 24 22 28 28 H 1.48490 * 109.47487 * 214.98615 * 26 24 22 29 29 H 1.48504 * 109.47262 * 334.99159 * 26 24 22 30 30 C 1.47425 * 108.70098 * 358.93994 * 21 20 19 31 31 H 1.08997 * 109.47347 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47012 * 300.00181 * 1 2 3 33 33 H 1.09011 * 109.47041 * 59.99425 * 1 2 3 34 34 H 1.09007 * 109.46898 * 240.00107 * 2 1 3 35 35 H 1.08997 * 109.46801 * 120.00701 * 2 1 3 36 36 H 1.07994 * 120.00248 * 0.02562 * 4 3 2 37 37 H 1.07998 * 119.99933 * 180.02562 * 5 4 3 38 38 H 1.07996 * 119.99898 * 179.97438 * 6 5 4 39 39 H 1.08003 * 120.00050 * 179.72250 * 7 6 5 40 40 H 1.08998 * 117.49978 * 359.97438 * 11 9 8 41 41 H 1.09000 * 117.49466 * 144.99531 * 11 9 8 42 42 H 0.96996 * 119.99780 * 359.97438 * 16 14 12 43 43 H 1.09001 * 109.47239 * 59.30542 * 18 17 16 44 44 H 1.09004 * 109.47126 * 179.30612 * 18 17 16 45 45 H 1.09002 * 109.46995 * 299.29782 * 18 17 16 46 46 H 1.09008 * 110.71788 * 35.79321 * 19 17 16 47 47 H 1.09002 * 110.72086 * 158.88322 * 19 17 16 48 48 H 1.09007 * 109.88140 * 97.21921 * 20 19 17 49 49 H 1.08996 * 109.88571 * 218.38419 * 20 19 17 50 50 H 0.97001 * 120.00094 * 180.02562 * 25 24 22 51 51 H 1.08997 * 110.36254 * 265.28937 * 30 21 20 52 52 H 1.09000 * 110.36653 * 142.97241 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3613 2.0377 -1.1928 5 6 2.8215 3.3410 -1.1927 6 6 2.9535 4.0275 0.0001 7 6 2.6303 3.4087 1.1930 8 6 2.1649 2.1068 1.1925 9 6 1.8075 1.4338 2.4927 10 1 1.0757 0.6294 2.4200 11 6 1.7814 2.3009 3.7531 12 6 2.9122 1.2920 3.5418 13 1 3.8975 1.6851 3.2914 14 6 2.9055 0.0505 4.3958 15 8 2.0457 -0.7901 4.2370 16 7 3.8556 -0.1263 5.3353 17 6 3.8494 -1.3336 6.1651 18 6 2.5112 -1.4904 6.8900 19 6 5.0299 -1.3226 7.1719 20 6 6.2113 -1.8408 6.3250 21 7 5.6429 -2.5947 5.1980 22 6 6.3595 -3.1999 4.2003 23 1 5.8528 -3.8013 3.4601 24 6 7.7371 -3.0404 4.1404 25 7 8.3715 -2.4260 5.1163 26 14 8.6906 -3.6981 2.6749 27 1 8.8772 -2.6128 1.6785 28 1 10.0173 -4.1883 3.1271 29 1 7.9352 -4.8156 2.0539 30 6 4.1736 -2.5903 5.3195 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5140 -0.8900 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 2.2577 1.5017 -2.1245 37 1 3.0780 3.8231 -2.1245 38 1 3.3136 5.0457 0.0002 39 1 2.7377 3.9434 2.1252 40 1 2.0231 3.3579 3.6419 41 1 1.0324 2.0667 4.5096 42 1 4.5438 0.5454 5.4614 43 1 1.7062 -1.5520 6.1577 44 1 2.5272 -2.4004 7.4898 45 1 2.3468 -0.6303 7.5393 46 1 5.2246 -0.3104 7.5268 47 1 4.8293 -1.9913 8.0089 48 1 6.7963 -1.0003 5.9513 49 1 6.8413 -2.4944 6.9282 50 1 9.3341 -2.3142 5.0743 51 1 3.8327 -3.4903 5.8312 52 1 3.7119 -2.5147 4.3350 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046578043.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:46 Heat of formation + Delta-G solvation = 13.611623 kcal Electronic energy + Delta-G solvation = -30571.980008 eV Core-core repulsion = 26729.605435 eV Total energy + Delta-G solvation = -3842.374573 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 6.07 seconds Orbital eigenvalues (eV) -41.55641 -40.62673 -39.09573 -37.16992 -35.61781 -35.10147 -33.63048 -31.86238 -31.31669 -30.36165 -30.20661 -27.53684 -25.99421 -25.23022 -24.78703 -24.61249 -22.25397 -21.99095 -21.52993 -20.81143 -20.43161 -19.00207 -18.36260 -17.47249 -17.06619 -16.68519 -16.58201 -16.11523 -15.84425 -15.59733 -15.58265 -14.99260 -14.93888 -14.74674 -14.41328 -14.16805 -14.08388 -13.91979 -13.66648 -13.46768 -13.39014 -13.11794 -13.08659 -12.85777 -12.78168 -12.73512 -12.66047 -12.30264 -12.13910 -12.05140 -11.99218 -11.83973 -11.74779 -11.71771 -11.56928 -11.45747 -11.34190 -10.71606 -10.56084 -9.96016 -9.66506 -9.38053 -8.88108 -7.89239 -5.21584 0.38600 0.50218 1.41306 1.42426 1.51503 1.59436 2.23002 2.45870 2.69194 3.10083 3.28966 3.52202 3.62122 3.69475 3.75530 3.86720 3.91685 3.95516 4.04417 4.12876 4.19064 4.21949 4.28731 4.31367 4.46589 4.62336 4.62740 4.64113 4.68462 4.69148 4.75944 4.83757 4.85933 4.91523 4.95925 4.97289 5.01730 5.07669 5.08572 5.11754 5.18355 5.25835 5.34935 5.37444 5.41464 5.62792 5.63670 5.63929 5.69947 5.77780 5.79318 6.14040 6.17892 6.68350 7.09545 7.35551 7.75156 8.39963 9.21073 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009414 B = 0.003502 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.521979 B = 7992.912242 C = 9465.763002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 C -0.087 4.087 4 C -0.129 4.129 5 C -0.126 4.126 6 C -0.128 4.128 7 C -0.122 4.122 8 C -0.065 4.065 9 C -0.089 4.089 10 H 0.110 0.890 11 C -0.116 4.116 12 C -0.186 4.186 13 H 0.127 0.873 14 C 0.542 3.458 15 O -0.572 6.572 16 N -0.696 5.696 17 C 0.168 3.832 18 C -0.141 4.141 19 C -0.129 4.129 20 C 0.185 3.815 21 N -0.620 5.620 22 C -0.244 4.244 23 H 0.067 0.933 24 C -0.054 4.054 25 N -0.942 5.942 26 Si 0.969 3.031 27 H -0.287 1.287 28 H -0.289 1.289 29 H -0.274 1.274 30 C 0.131 3.869 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.133 0.867 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.134 0.866 41 H 0.107 0.893 42 H 0.407 0.593 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.097 0.903 47 H 0.091 0.909 48 H 0.020 0.980 49 H 0.007 0.993 50 H 0.248 0.752 51 H 0.023 0.977 52 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.973 15.989 -4.873 22.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 C -0.087 4.087 4 C -0.147 4.147 5 C -0.144 4.144 6 C -0.146 4.146 7 C -0.140 4.140 8 C -0.065 4.065 9 C -0.108 4.108 10 H 0.128 0.872 11 C -0.153 4.153 12 C -0.207 4.207 13 H 0.144 0.856 14 C 0.330 3.670 15 O -0.453 6.453 16 N -0.345 5.345 17 C 0.080 3.920 18 C -0.200 4.200 19 C -0.167 4.167 20 C 0.060 3.940 21 N -0.347 5.347 22 C -0.374 4.374 23 H 0.085 0.915 24 C -0.248 4.248 25 N -0.591 5.591 26 Si 0.798 3.202 27 H -0.215 1.215 28 H -0.215 1.215 29 H -0.199 1.199 30 C 0.005 3.995 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.150 0.850 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.160 0.840 40 H 0.152 0.848 41 H 0.125 0.875 42 H 0.242 0.758 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.115 0.885 47 H 0.109 0.891 48 H 0.038 0.962 49 H 0.025 0.975 50 H 0.058 0.942 51 H 0.041 0.959 52 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -15.360 15.338 -5.020 22.280 hybrid contribution 1.466 -0.723 -0.782 1.812 sum -13.894 14.614 -5.802 20.983 Atomic orbital electron populations 1.21677 0.93600 1.02082 1.02146 1.20552 0.97227 0.92710 1.02248 1.19890 0.99376 0.96222 0.93222 1.21255 1.00027 0.95908 0.97487 1.21455 0.99175 0.94489 0.99275 1.21433 1.00002 1.01015 0.92154 1.21296 0.99096 0.94017 0.99593 1.19083 1.00418 0.94536 0.92485 1.21016 0.99744 1.01964 0.88065 0.87237 1.23239 0.97208 0.96998 0.97864 1.22296 0.97839 0.97730 1.02831 0.85557 1.19945 0.80599 0.87017 0.79452 1.90604 1.39366 1.45756 1.69542 1.45738 1.30194 1.22198 1.36407 1.21340 0.96228 0.84214 0.90180 1.21942 0.95178 1.02843 1.00001 1.23096 0.93493 1.02988 0.97107 1.20952 0.92336 0.93661 0.87075 1.44683 1.00761 1.62227 1.27002 1.19305 0.90062 1.24102 1.03886 0.91512 1.25488 0.97025 1.01608 1.00672 1.70148 1.07543 1.48927 1.32473 0.85200 0.78009 0.77785 0.79230 1.21454 1.21494 1.19937 1.21966 0.84408 0.95657 0.97487 0.92058 0.92942 0.91672 0.90753 0.92912 0.84953 0.83989 0.83709 0.84000 0.84834 0.87463 0.75769 0.91919 0.90966 0.90587 0.88456 0.89089 0.96202 0.97521 0.94245 0.95924 0.95788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.74 71.98 0.70 -2.14 16 2 C -0.09 -2.20 5.38 29.85 0.16 -2.04 16 3 C -0.09 -2.09 5.13 -19.87 -0.10 -2.20 16 4 C -0.13 -2.67 9.68 22.27 0.22 -2.46 16 5 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 6 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 7 C -0.12 -2.35 9.29 22.27 0.21 -2.14 16 8 C -0.07 -1.52 5.61 -19.86 -0.11 -1.64 16 9 C -0.09 -2.18 4.66 -11.53 -0.05 -2.23 16 10 H 0.11 3.10 5.47 -2.39 -0.01 3.09 16 11 C -0.12 -2.16 9.56 30.60 0.29 -1.87 16 12 C -0.19 -4.76 5.82 -11.54 -0.07 -4.83 16 13 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 14 C 0.54 17.80 6.99 87.65 0.61 18.41 16 15 O -0.57 -22.20 13.11 -3.03 -0.04 -22.24 16 16 N -0.70 -22.41 5.18 -416.66 -2.16 -24.57 16 17 C 0.17 5.82 0.83 5.00 0.00 5.83 16 18 C -0.14 -4.10 8.52 71.98 0.61 -3.49 16 19 C -0.13 -4.38 5.97 31.78 0.19 -4.19 16 20 C 0.18 8.88 5.37 86.73 0.47 9.35 16 21 N -0.62 -32.92 3.39 -692.00 -2.35 -35.27 16 22 C -0.24 -14.38 10.27 84.03 0.86 -13.52 16 23 H 0.07 3.93 7.84 -2.91 -0.02 3.90 16 24 C -0.05 -3.15 5.48 84.86 0.46 -2.68 16 25 N -0.94 -56.38 10.36 21.65 0.22 -56.15 16 26 Si 0.97 47.06 29.56 68.60 2.03 49.08 16 27 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 28 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 29 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 30 C 0.13 5.94 6.17 86.85 0.54 6.48 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.12 7.18 -2.39 -0.02 1.10 16 33 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.07 1.68 8.05 -2.38 -0.02 1.66 16 35 H 0.05 1.58 6.94 -2.39 -0.02 1.56 16 36 H 0.13 2.29 8.06 -2.91 -0.02 2.26 16 37 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 38 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 39 H 0.14 2.04 6.03 -2.91 -0.02 2.02 16 40 H 0.13 1.71 6.18 -2.39 -0.01 1.69 16 41 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.41 11.70 8.51 -92.71 -0.79 10.91 16 43 H 0.06 2.06 6.01 -2.39 -0.01 2.04 16 44 H 0.07 1.94 8.13 -2.39 -0.02 1.92 16 45 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.10 2.71 8.09 -2.38 -0.02 2.69 16 47 H 0.09 2.81 8.04 -2.39 -0.02 2.79 16 48 H 0.02 1.05 7.30 -2.38 -0.02 1.03 16 49 H 0.01 0.36 7.61 -2.39 -0.02 0.34 16 50 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 51 H 0.02 1.03 8.03 -2.39 -0.02 1.02 16 52 H 0.02 1.20 6.86 -2.39 -0.02 1.18 16 Total: -1.00 -72.70 406.94 3.27 -69.43 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.13 Total: 29.09 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 5.44 Total: -9.37 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -4.28 Total: -116.00 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.04 Total: -22.24 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.08 kcal Total: -72.70 3.27 -69.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046578043.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.041 kcal (2) G-P(sol) polarization free energy of solvation -72.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.07 seconds