Wall clock time and date at job start Wed Apr 1 2020 03:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47034 * 2 1 4 4 C 1.38256 * 119.99506 * 265.01780 * 3 2 1 5 5 C 1.38222 * 119.99851 * 179.97438 * 4 3 2 6 6 C 1.38251 * 119.99839 * 359.95946 * 5 4 3 7 7 C 1.38218 * 119.99993 * 359.79066 * 6 5 4 8 8 C 1.38205 * 120.00188 * 84.99870 * 3 2 1 9 9 C 1.50701 * 120.00066 * 0.02562 * 8 3 2 10 10 C 1.50704 * 109.47141 * 85.00194 * 9 8 3 11 11 O 1.21290 * 119.99744 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00165 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00198 * 180.02562 * 12 10 9 14 14 H 1.09005 * 109.17703 * 34.54928 * 13 12 10 15 15 C 1.57457 * 109.83917 * 153.66606 * 13 12 10 16 16 C 1.53970 * 108.08266 * 174.91683 * 15 13 12 17 17 H 1.09002 * 112.99812 * 169.26516 * 16 15 13 18 18 C 1.55431 * 107.19885 * 294.65863 * 16 15 13 19 19 C 1.55168 * 100.35455 * 73.65866 * 18 16 15 20 20 H 1.08996 * 112.48412 * 162.66676 * 19 18 16 21 21 C 1.52988 * 109.32529 * 275.00041 * 13 12 10 22 22 N 1.47787 * 104.25640 * 40.54440 * 19 18 16 23 23 C 1.36937 * 125.85500 * 153.49810 * 22 19 18 24 24 H 1.07996 * 120.00155 * 0.03014 * 23 22 19 25 25 C 1.38814 * 119.99892 * 180.02562 * 23 22 19 26 26 N 1.31615 * 120.00043 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 119.99797 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47323 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47398 * 120.00153 * 27 25 23 30 30 H 1.48502 * 109.46588 * 240.00140 * 27 25 23 31 31 C 1.47081 * 108.29001 * 333.54340 * 22 19 18 32 32 H 1.08996 * 109.46959 * 60.00284 * 1 2 3 33 33 H 1.08998 * 109.47036 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46980 * 300.00248 * 1 2 3 35 35 H 1.08995 * 109.47189 * 239.99473 * 2 1 3 36 36 H 1.09004 * 109.46866 * 119.99441 * 2 1 3 37 37 H 1.08001 * 120.00458 * 359.97438 * 4 3 2 38 38 H 1.07992 * 120.00019 * 179.97438 * 5 4 3 39 39 H 1.08003 * 120.00243 * 180.02562 * 6 5 4 40 40 H 1.08002 * 120.00227 * 180.25166 * 7 6 5 41 41 H 1.08996 * 109.47101 * 325.00286 * 9 8 3 42 42 H 1.08997 * 109.47200 * 204.99908 * 9 8 3 43 43 H 0.97006 * 119.99892 * 359.97438 * 12 10 9 44 44 H 1.09005 * 109.73572 * 55.46902 * 15 13 12 45 45 H 1.09004 * 110.16581 * 294.61278 * 15 13 12 46 46 H 1.08999 * 111.23001 * 191.43461 * 18 16 15 47 47 H 1.08999 * 111.23373 * 315.87637 * 18 16 15 48 48 H 1.09000 * 109.53895 * 64.74808 * 21 13 12 49 49 H 1.09002 * 109.59634 * 304.56173 * 21 13 12 50 50 H 0.96999 * 119.99651 * 180.02562 * 26 25 23 51 51 H 1.08998 * 109.97960 * 241.73400 * 31 22 19 52 52 H 1.09003 * 110.01081 * 120.47325 * 31 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3607 2.0378 -1.1929 5 6 2.8209 3.3412 -1.1930 6 6 2.9520 4.0281 -0.0004 7 6 2.6188 3.4129 1.1917 8 6 2.1643 2.1072 1.1923 9 6 1.8064 1.4345 2.4925 10 6 2.9861 0.6380 2.9874 11 8 4.0160 0.6180 2.3469 12 7 2.8965 -0.0531 4.1410 13 6 4.0434 -0.8270 4.6223 14 1 4.9635 -0.3062 4.3570 15 6 3.9750 -0.9653 6.1893 16 6 5.1221 -1.8892 6.6380 17 1 5.2669 -1.8945 7.7184 18 6 4.8321 -3.2995 6.0525 19 6 5.1724 -3.0565 4.5582 20 1 5.3275 -3.9854 4.0096 21 6 4.0352 -2.2075 3.9631 22 7 6.3852 -2.2126 4.5938 23 6 7.3439 -2.1447 3.6184 24 1 7.2481 -2.7429 2.7244 25 6 8.4390 -1.3069 3.7788 26 7 8.5560 -0.5781 4.8685 27 14 9.7465 -1.2137 2.4478 28 1 9.3838 -2.1249 1.3328 29 1 9.8378 0.1788 1.9401 30 1 11.0579 -1.6214 3.0130 31 6 6.3863 -1.4591 5.8569 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 2.2577 1.5015 -2.1246 38 1 3.0779 3.8230 -2.1247 39 1 3.3112 5.0466 -0.0004 40 1 2.7173 3.9508 2.1230 41 1 0.9582 0.7682 2.3355 42 1 1.5426 2.1905 3.2321 43 1 2.0727 -0.0374 4.6530 44 1 3.0194 -1.4024 6.4789 45 1 4.0887 0.0122 6.6582 46 1 5.4892 -4.0512 6.4899 47 1 3.7844 -3.5720 6.1796 48 1 4.1849 -2.0995 2.8889 49 1 3.0791 -2.6964 4.1504 50 1 9.3211 0.0076 4.9803 51 1 6.3515 -0.3890 5.6522 52 1 7.2798 -1.6987 6.4334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047096743.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:23 Heat of formation + Delta-G solvation = -14.127332 kcal Electronic energy + Delta-G solvation = -31222.526089 eV Core-core repulsion = 27378.948665 eV Total energy + Delta-G solvation = -3843.577425 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.51666 -40.75093 -39.52569 -35.95073 -35.21496 -34.67456 -33.53759 -32.33346 -31.34249 -30.42116 -29.91292 -28.15730 -27.19482 -24.89941 -24.75223 -23.62975 -22.65788 -21.67171 -21.27738 -21.01215 -20.06537 -18.93205 -17.99673 -17.54968 -17.14623 -16.99433 -16.56011 -16.11529 -15.96819 -15.57918 -15.36202 -15.07779 -14.69883 -14.51588 -14.33348 -14.12027 -13.96235 -13.85763 -13.77667 -13.45170 -13.38292 -13.25239 -13.01890 -12.98920 -12.80020 -12.66034 -12.63279 -12.51003 -12.17538 -12.12017 -11.87599 -11.71137 -11.64692 -11.56706 -11.35906 -11.17254 -10.95237 -10.72254 -10.68824 -9.90029 -9.69754 -9.47536 -8.82624 -7.84481 -5.15399 0.42413 0.50322 1.35547 1.39325 1.47046 1.77945 2.31095 2.47004 2.91368 3.34317 3.65589 3.66844 3.82700 3.84272 3.86327 3.98658 4.07939 4.09314 4.19327 4.27782 4.33658 4.37743 4.48384 4.49846 4.52128 4.55228 4.61814 4.65804 4.69405 4.72088 4.75106 4.80990 4.85955 5.01859 5.07630 5.11382 5.16078 5.21256 5.22754 5.30625 5.35731 5.39582 5.48224 5.49350 5.51813 5.57811 5.60766 5.69904 5.74250 5.78448 5.85487 6.14296 6.23098 6.74806 7.14022 7.49280 7.82873 8.46430 9.25760 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010261 B = 0.003830 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.136103 B = 7309.297855 C = 8739.836440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 C -0.079 4.079 4 C -0.135 4.135 5 C -0.127 4.127 6 C -0.138 4.138 7 C -0.123 4.123 8 C -0.080 4.080 9 C -0.094 4.094 10 C 0.502 3.498 11 O -0.581 6.581 12 N -0.712 5.712 13 C 0.152 3.848 14 H 0.041 0.959 15 C -0.096 4.096 16 C -0.109 4.109 17 H 0.108 0.892 18 C -0.109 4.109 19 C 0.139 3.861 20 H 0.059 0.941 21 C -0.119 4.119 22 N -0.615 5.615 23 C -0.225 4.225 24 H 0.069 0.931 25 C -0.065 4.065 26 N -0.948 5.948 27 Si 0.962 3.038 28 H -0.270 1.270 29 H -0.301 1.301 30 H -0.285 1.285 31 C 0.190 3.810 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.133 0.867 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.415 0.585 44 H 0.106 0.894 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.109 0.891 48 H 0.016 0.984 49 H 0.088 0.912 50 H 0.242 0.758 51 H 0.002 0.998 52 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.583 3.110 -2.208 23.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.125 4.125 3 C -0.079 4.079 4 C -0.153 4.153 5 C -0.145 4.145 6 C -0.156 4.156 7 C -0.141 4.141 8 C -0.080 4.080 9 C -0.133 4.133 10 C 0.289 3.711 11 O -0.460 6.460 12 N -0.365 5.365 13 C 0.047 3.953 14 H 0.059 0.941 15 C -0.134 4.134 16 C -0.129 4.129 17 H 0.126 0.874 18 C -0.147 4.147 19 C 0.033 3.967 20 H 0.077 0.923 21 C -0.160 4.160 22 N -0.339 5.339 23 C -0.354 4.354 24 H 0.087 0.913 25 C -0.258 4.258 26 N -0.599 5.599 27 Si 0.792 3.208 28 H -0.195 1.195 29 H -0.229 1.229 30 H -0.211 1.211 31 C 0.065 3.935 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.151 0.849 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.252 0.748 44 H 0.124 0.876 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.127 0.873 48 H 0.035 0.965 49 H 0.106 0.894 50 H 0.052 0.948 51 H 0.020 0.980 52 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -22.661 3.187 -2.712 23.044 hybrid contribution 1.595 0.499 -0.820 1.861 sum -21.066 3.686 -3.532 21.676 Atomic orbital electron populations 1.21721 0.92322 1.02709 1.02728 1.20562 0.97853 0.91878 1.02202 1.19958 0.98604 0.96346 0.93022 1.21275 1.00367 0.95727 0.97921 1.21414 0.99313 0.94880 0.98919 1.21374 1.00577 1.01044 0.92599 1.21273 0.98905 0.94973 0.98989 1.19387 1.00376 0.94249 0.93991 1.20777 0.96305 1.00479 0.95740 1.21224 0.89622 0.79375 0.80829 1.90821 1.33515 1.64193 1.57498 1.45923 1.17108 1.49554 1.23879 1.21584 0.88090 0.91332 0.94266 0.94079 1.22620 0.99462 0.99815 0.91486 1.22801 0.94669 0.95748 0.99653 0.87416 1.22908 1.02296 0.95850 0.93608 1.21875 0.85823 0.92529 0.96515 0.92317 1.22361 0.99526 0.96181 0.97909 1.44852 1.22344 1.48284 1.18419 1.19319 0.99087 1.19602 0.97420 0.91289 1.25438 1.00912 0.99719 0.99718 1.70165 1.30758 1.31095 1.27838 0.85225 0.79631 0.76766 0.79157 1.19502 1.22889 1.21140 1.21034 0.93656 0.93258 0.85531 0.92075 0.91124 0.91606 0.91447 0.92745 0.84875 0.84162 0.84451 0.85335 0.85361 0.85442 0.74761 0.87557 0.91776 0.91989 0.87323 0.96499 0.89370 0.94845 0.97984 0.98201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.72 71.98 0.70 -1.45 16 2 C -0.09 -2.02 5.38 29.85 0.16 -1.86 16 3 C -0.08 -2.11 5.13 -19.87 -0.10 -2.21 16 4 C -0.14 -3.39 9.68 22.27 0.22 -3.17 16 5 C -0.13 -3.03 10.05 22.27 0.22 -2.81 16 6 C -0.14 -3.40 10.05 22.27 0.22 -3.17 16 7 C -0.12 -3.26 9.68 22.27 0.22 -3.04 16 8 C -0.08 -2.13 4.37 -19.87 -0.09 -2.22 16 9 C -0.09 -2.05 5.16 29.10 0.15 -1.90 16 10 C 0.50 16.37 6.99 87.66 0.61 16.99 16 11 O -0.58 -27.42 15.68 -3.06 -0.05 -27.47 16 12 N -0.71 -19.66 5.09 -435.12 -2.21 -21.87 16 13 C 0.15 5.49 2.16 46.56 0.10 5.59 16 14 H 0.04 2.13 5.41 -2.38 -0.01 2.12 16 15 C -0.10 -2.69 5.28 32.50 0.17 -2.52 16 16 C -0.11 -3.68 4.27 -9.05 -0.04 -3.72 16 17 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 18 C -0.11 -3.33 6.19 32.17 0.20 -3.13 16 19 C 0.14 5.63 4.25 45.79 0.19 5.82 16 20 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 21 C -0.12 -4.33 5.31 30.89 0.16 -4.17 16 22 N -0.61 -32.57 2.41 -664.47 -1.60 -34.16 16 23 C -0.22 -13.61 10.29 84.03 0.87 -12.75 16 24 H 0.07 4.14 7.83 -2.91 -0.02 4.11 16 25 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 26 N -0.95 -61.06 10.35 21.65 0.22 -60.84 16 27 Si 0.96 50.67 29.55 68.60 2.03 52.69 16 28 H -0.27 -13.59 7.11 99.48 0.71 -12.88 16 29 H -0.30 -16.21 7.11 99.48 0.71 -15.50 16 30 H -0.28 -14.49 7.11 99.48 0.71 -13.79 16 31 C 0.19 9.55 4.09 86.85 0.36 9.90 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.89 6.80 -2.39 -0.02 0.87 16 35 H 0.07 1.56 8.05 -2.39 -0.02 1.54 16 36 H 0.05 1.45 6.42 -2.38 -0.02 1.44 16 37 H 0.13 2.78 8.06 -2.91 -0.02 2.75 16 38 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 39 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 40 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 41 H 0.13 2.04 5.62 -2.39 -0.01 2.03 16 42 H 0.13 1.99 8.05 -2.39 -0.02 1.97 16 43 H 0.42 7.10 8.65 -92.70 -0.80 6.29 16 44 H 0.11 1.97 8.03 -2.38 -0.02 1.95 16 45 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 46 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 47 H 0.11 2.36 7.83 -2.39 -0.02 2.34 16 48 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.09 2.41 8.03 -2.39 -0.02 2.39 16 50 H 0.24 15.24 8.31 -92.71 -0.77 14.47 16 51 H 0.00 0.12 6.17 -2.39 -0.01 0.10 16 52 H 0.00 -0.02 7.40 -2.39 -0.02 -0.03 16 Total: -1.00 -86.34 399.77 3.29 -83.05 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.11 Total: 21.99 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 4.79 Total: -13.40 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -3.59 Total: -116.87 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.05 Total: -27.47 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.03 Total: 52.69 kcal Total: -86.34 3.29 -83.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047096743.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.924 kcal (2) G-P(sol) polarization free energy of solvation -86.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds