Wall clock time and date at job start Wed Apr 1 2020 03:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50708 * 109.47183 * 2 1 4 4 C 1.38261 * 119.99727 * 269.98396 * 3 2 1 5 5 C 1.38216 * 119.99512 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.00074 * 359.84846 * 5 4 3 7 7 C 1.38212 * 119.99765 * 0.40243 * 6 5 4 8 8 C 1.50701 * 119.99719 * 179.80805 * 7 6 5 9 9 C 1.50704 * 109.47141 * 269.72801 * 8 7 6 10 10 O 1.21290 * 119.99744 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00165 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00198 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.32448 * 34.64094 * 12 11 9 14 14 C 1.57457 * 109.83917 * 153.66606 * 12 11 9 15 15 C 1.53970 * 108.08266 * 174.91683 * 14 12 11 16 16 H 1.09002 * 112.99812 * 169.26516 * 15 14 12 17 17 C 1.55431 * 107.19885 * 294.65863 * 15 14 12 18 18 C 1.55168 * 100.35455 * 73.65866 * 17 15 14 19 19 H 1.08996 * 112.48412 * 162.66676 * 18 17 15 20 20 C 1.52988 * 109.32529 * 275.00041 * 12 11 9 21 21 N 1.47787 * 104.25640 * 40.54440 * 18 17 15 22 22 C 1.36937 * 125.85500 * 153.49810 * 21 18 17 23 23 H 1.07996 * 120.00155 * 0.03014 * 22 21 18 24 24 C 1.38814 * 119.99892 * 180.02562 * 22 21 18 25 25 N 1.31615 * 120.00043 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99797 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47323 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47398 * 120.00153 * 26 24 22 29 29 H 1.48502 * 109.46588 * 240.00140 * 26 24 22 30 30 C 1.47081 * 108.29001 * 333.54340 * 21 18 17 31 31 C 1.38211 * 119.99971 * 89.99743 * 3 2 1 32 32 H 1.08997 * 109.47187 * 59.99706 * 1 2 3 33 33 H 1.08998 * 109.47298 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46871 * 299.99852 * 1 2 3 35 35 H 1.08998 * 109.47225 * 240.00397 * 2 1 3 36 36 H 1.08996 * 109.47875 * 119.99999 * 2 1 3 37 37 H 1.08000 * 120.00277 * 359.97438 * 4 3 2 38 38 H 1.08000 * 119.99473 * 180.02562 * 5 4 3 39 39 H 1.07997 * 119.99600 * 180.20877 * 6 5 4 40 40 H 1.08996 * 109.47101 * 149.72893 * 8 7 6 41 41 H 1.08997 * 109.47200 * 29.72515 * 8 7 6 42 42 H 0.97006 * 119.99892 * 359.97438 * 11 9 8 43 43 H 1.09005 * 109.73572 * 55.46902 * 14 12 11 44 44 H 1.09004 * 110.16581 * 294.61278 * 14 12 11 45 45 H 1.08999 * 111.23001 * 191.43461 * 17 15 14 46 46 H 1.08999 * 111.23373 * 315.87637 * 17 15 14 47 47 H 1.09000 * 109.53895 * 64.74808 * 20 12 11 48 48 H 1.09002 * 109.59634 * 304.56173 * 20 12 11 49 49 H 0.96999 * 119.99651 * 180.02562 * 25 24 22 50 50 H 1.08998 * 109.97960 * 241.73400 * 30 21 18 51 51 H 1.09003 * 110.01081 * 120.47325 * 30 21 18 52 52 H 1.07998 * 119.99633 * 359.97438 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2631 2.0725 -1.1974 5 6 2.7233 3.3758 -1.1974 6 6 2.9499 4.0289 0.0000 7 6 2.7242 3.3756 1.1969 8 6 2.9753 4.0860 2.5021 9 6 4.3984 3.8485 2.9376 10 8 5.1359 3.1688 2.2555 11 7 4.8512 4.3905 4.0854 12 6 6.2347 4.1600 4.5085 13 1 6.8773 4.1110 3.6294 14 6 6.7203 5.3495 5.4187 15 6 8.1265 5.0064 5.9436 16 1 8.6173 5.8498 6.4294 17 6 7.9816 3.7664 6.8695 18 6 7.7461 2.6551 5.8125 19 1 7.9142 1.6558 6.2138 20 6 6.3172 2.8360 5.2704 21 7 8.6820 2.9891 4.7186 22 6 9.2241 2.1015 3.8278 23 1 8.9743 1.0527 3.8907 24 6 10.0946 2.5498 2.8439 25 7 10.3994 3.8279 2.7675 26 14 10.8336 1.3391 1.6283 27 1 10.3358 -0.0279 1.9264 28 1 10.4391 1.7200 0.2483 29 1 12.3138 1.3625 1.7443 30 6 8.9322 4.4381 4.7514 31 6 2.2627 2.0724 1.1969 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 2.0837 1.5631 -2.1327 38 1 2.9032 3.8849 -2.1327 39 1 3.3063 5.0483 0.0000 40 1 2.2941 3.7024 3.2615 41 1 2.8091 5.1553 2.3716 42 1 4.2613 4.9338 4.6311 43 1 6.0369 5.4729 6.2589 44 1 6.7615 6.2727 4.8405 45 1 8.8963 3.5865 7.4344 46 1 7.1234 3.8679 7.5338 47 1 6.0756 2.0128 4.5980 48 1 5.6112 2.8473 6.1008 49 1 11.0074 4.1412 2.0797 50 1 8.5941 4.8955 3.8216 51 1 9.9955 4.6298 4.8952 52 1 2.0822 1.5634 2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047098782.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:27 Heat of formation + Delta-G solvation = -16.530888 kcal Electronic energy + Delta-G solvation = -30577.735830 eV Core-core repulsion = 26734.054180 eV Total energy + Delta-G solvation = -3843.681651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.44521 -40.63550 -39.62486 -35.97948 -35.31859 -34.67724 -33.38157 -32.33350 -31.35056 -30.43527 -29.91367 -28.14654 -27.19443 -24.89532 -24.81447 -23.65568 -22.72711 -21.69751 -21.24905 -20.90867 -20.03979 -18.92938 -17.98013 -17.54891 -17.20811 -16.79179 -16.55248 -16.13989 -15.97853 -15.62247 -15.39564 -15.06607 -14.72366 -14.55781 -14.37211 -14.11965 -13.99104 -13.80597 -13.79027 -13.46269 -13.38289 -13.25315 -13.01725 -12.95219 -12.81304 -12.63862 -12.60872 -12.51003 -12.16233 -12.11995 -11.87333 -11.71736 -11.65343 -11.64756 -11.36303 -11.17494 -10.95641 -10.72515 -10.68780 -9.90463 -9.68897 -9.50312 -8.82438 -7.84299 -5.15239 0.41395 0.49688 1.35890 1.39688 1.47486 1.77987 2.30779 2.47238 2.90827 3.34349 3.65422 3.67076 3.81038 3.82693 3.86151 3.97088 4.07680 4.17317 4.21170 4.28412 4.36461 4.38762 4.48938 4.49509 4.54900 4.56068 4.59214 4.64744 4.67760 4.69311 4.78108 4.80791 4.85757 5.00447 5.07193 5.11146 5.17981 5.20592 5.22083 5.30454 5.35586 5.36827 5.47835 5.49295 5.51606 5.55458 5.65215 5.69814 5.71167 5.78353 5.85431 6.13489 6.23157 6.74802 7.14108 7.49280 7.82927 8.46543 9.25848 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010317 B = 0.003343 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.379942 B = 8374.674460 C = 9766.798268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.086 4.086 3 C -0.092 4.092 4 C -0.133 4.133 5 C -0.127 4.127 6 C -0.131 4.131 7 C -0.075 4.075 8 C -0.090 4.090 9 C 0.500 3.500 10 O -0.585 6.585 11 N -0.712 5.712 12 C 0.151 3.849 13 H 0.041 0.959 14 C -0.096 4.096 15 C -0.110 4.110 16 H 0.108 0.892 17 C -0.108 4.108 18 C 0.139 3.861 19 H 0.059 0.941 20 C -0.119 4.119 21 N -0.614 5.614 22 C -0.225 4.225 23 H 0.069 0.931 24 C -0.066 4.066 25 N -0.948 5.948 26 Si 0.963 3.037 27 H -0.270 1.270 28 H -0.301 1.301 29 H -0.285 1.285 30 C 0.190 3.810 31 C -0.121 4.121 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.125 0.875 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.416 0.584 43 H 0.106 0.894 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.108 0.892 47 H 0.015 0.985 48 H 0.088 0.912 49 H 0.242 0.758 50 H 0.002 0.998 51 H 0.000 1.000 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.349 2.687 3.617 23.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.150 4.150 5 C -0.145 4.145 6 C -0.149 4.149 7 C -0.075 4.075 8 C -0.129 4.129 9 C 0.287 3.713 10 O -0.464 6.464 11 N -0.364 5.364 12 C 0.046 3.954 13 H 0.060 0.940 14 C -0.134 4.134 15 C -0.129 4.129 16 H 0.126 0.874 17 C -0.146 4.146 18 C 0.032 3.968 19 H 0.077 0.923 20 C -0.160 4.160 21 N -0.338 5.338 22 C -0.355 4.355 23 H 0.087 0.913 24 C -0.259 4.259 25 N -0.598 5.598 26 Si 0.793 3.207 27 H -0.195 1.195 28 H -0.229 1.229 29 H -0.211 1.211 30 C 0.065 3.935 31 C -0.139 4.139 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.253 0.747 43 H 0.124 0.876 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.127 0.873 47 H 0.034 0.966 48 H 0.106 0.894 49 H 0.052 0.948 50 H 0.020 0.980 51 H 0.018 0.982 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -22.689 2.190 2.964 22.986 hybrid contribution 1.062 -0.501 -1.242 1.709 sum -21.628 1.689 1.722 21.762 Atomic orbital electron populations 1.21694 0.93248 1.02485 1.02161 1.20587 0.97319 0.91401 1.03027 1.20162 0.98888 0.97112 0.93079 1.21278 1.00447 0.95117 0.98207 1.21371 0.99256 0.95440 0.98457 1.21225 1.00285 1.00796 0.92631 1.19546 0.98569 0.94805 0.94604 1.20725 0.92083 1.04075 0.96009 1.21325 0.90529 0.78850 0.80582 1.90821 1.59853 1.40416 1.55295 1.45913 1.13494 1.53274 1.23701 1.21587 0.81517 0.94912 0.97359 0.94044 1.22620 0.96199 0.95523 0.99030 1.22805 0.95872 0.98328 0.95899 0.87398 1.22905 1.02358 0.93540 0.95836 1.21879 0.88686 0.97509 0.88716 0.92309 1.22366 0.98610 0.96045 0.99005 1.44837 1.51857 1.04002 1.33114 1.19325 1.19508 0.89904 1.06777 0.91294 1.25451 1.01507 0.97762 1.01131 1.70166 1.39880 1.13643 1.36125 0.85210 0.77951 0.78822 0.78697 1.19510 1.22868 1.21146 1.21038 0.95231 0.83239 0.94000 1.21057 1.00354 0.94209 0.98256 0.92426 0.91107 0.92650 0.90595 0.91379 0.84546 0.84530 0.85711 0.84973 0.85232 0.74668 0.87573 0.91751 0.91976 0.87342 0.96560 0.89373 0.94845 0.97961 0.98182 0.85747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.89 71.98 0.71 -1.35 16 2 C -0.09 -1.67 6.06 29.85 0.18 -1.49 16 3 C -0.09 -2.29 5.13 -19.86 -0.10 -2.39 16 4 C -0.13 -3.21 9.70 22.27 0.22 -2.99 16 5 C -0.13 -3.20 10.05 22.27 0.22 -2.98 16 6 C -0.13 -3.54 9.70 22.27 0.22 -3.32 16 7 C -0.07 -2.00 4.37 -19.87 -0.09 -2.08 16 8 C -0.09 -1.90 5.83 29.10 0.17 -1.73 16 9 C 0.50 16.29 7.79 87.66 0.68 16.97 16 10 O -0.58 -27.76 15.69 -3.06 -0.05 -27.81 16 11 N -0.71 -19.62 5.09 -435.12 -2.21 -21.83 16 12 C 0.15 5.47 2.16 46.56 0.10 5.57 16 13 H 0.04 2.16 5.41 -2.38 -0.01 2.14 16 14 C -0.10 -2.70 5.28 32.50 0.17 -2.52 16 15 C -0.11 -3.70 4.27 -9.05 -0.04 -3.74 16 16 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 17 C -0.11 -3.34 6.19 32.17 0.20 -3.14 16 18 C 0.14 5.63 4.25 45.79 0.19 5.83 16 19 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 20 C -0.12 -4.38 5.31 30.89 0.16 -4.21 16 21 N -0.61 -32.54 2.41 -664.47 -1.60 -34.14 16 22 C -0.23 -13.68 10.29 84.03 0.87 -12.82 16 23 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 24 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 25 N -0.95 -61.01 10.35 21.65 0.22 -60.79 16 26 Si 0.96 50.67 29.55 68.60 2.03 52.70 16 27 H -0.27 -13.58 7.11 99.48 0.71 -12.87 16 28 H -0.30 -16.17 7.11 99.48 0.71 -15.46 16 29 H -0.28 -14.48 7.11 99.48 0.71 -13.78 16 30 C 0.19 9.54 4.09 86.85 0.36 9.89 16 31 C -0.12 -3.18 9.36 22.27 0.21 -2.97 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.08 1.37 8.09 -2.39 -0.02 1.35 16 36 H 0.07 1.35 8.09 -2.39 -0.02 1.33 16 37 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 38 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 39 H 0.12 3.03 8.06 -2.91 -0.02 3.00 16 40 H 0.13 1.88 8.09 -2.39 -0.02 1.87 16 41 H 0.13 1.94 8.08 -2.39 -0.02 1.92 16 42 H 0.42 7.03 8.65 -92.70 -0.80 6.22 16 43 H 0.11 1.98 8.03 -2.38 -0.02 1.96 16 44 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 45 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.11 2.37 7.83 -2.39 -0.02 2.35 16 47 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.09 2.43 8.03 -2.39 -0.02 2.41 16 49 H 0.24 15.23 8.31 -92.71 -0.77 14.46 16 50 H 0.00 0.13 6.17 -2.39 -0.01 0.12 16 51 H 0.00 0.00 7.40 -2.39 -0.02 -0.02 16 52 H 0.12 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -86.62 406.98 3.39 -83.24 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.10 Total: 21.69 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: 4.90 Total: -13.06 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -3.59 Total: -116.76 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.05 Total: -27.81 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.03 Total: 52.70 kcal Total: -86.62 3.39 -83.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047098782.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.704 kcal (2) G-P(sol) polarization free energy of solvation -86.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds