Wall clock time and date at job start Wed Apr 1 2020 03:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.46819 * 2 1 4 4 C 1.38257 * 119.99787 * 90.00655 * 3 2 1 5 5 C 1.38210 * 119.99650 * 180.02562 * 4 3 2 6 6 C 1.38254 * 120.00544 * 359.95169 * 5 4 3 7 7 C 1.38216 * 119.99684 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00075 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.46875 * 89.99714 * 8 7 6 10 10 O 1.21283 * 120.00405 * 0.02562 * 9 8 7 11 11 N 1.34782 * 120.00026 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99963 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.32443 * 51.08240 * 12 11 9 14 14 C 1.52627 * 109.39766 * 291.49985 * 12 11 9 15 15 C 1.53972 * 108.85307 * 295.56005 * 14 12 11 16 16 H 1.09005 * 113.66965 * 168.18205 * 15 14 12 17 17 C 1.55424 * 106.41903 * 293.44958 * 15 14 12 18 18 C 1.55410 * 100.24951 * 73.22030 * 17 15 14 19 19 H 1.09001 * 112.47715 * 162.86365 * 18 17 15 20 20 C 1.52989 * 109.32468 * 170.72498 * 12 11 9 21 21 N 1.47796 * 104.13478 * 40.83305 * 18 17 15 22 22 C 1.36933 * 125.85373 * 153.48406 * 21 18 17 23 23 H 1.07996 * 120.00568 * 15.45941 * 22 21 18 24 24 C 1.38816 * 119.99396 * 195.46328 * 22 21 18 25 25 N 1.31622 * 119.99761 * 204.57144 * 24 22 21 26 26 Si 1.86796 * 119.99968 * 24.85207 * 24 22 21 27 27 H 1.48497 * 109.47182 * 274.90589 * 26 24 22 28 28 H 1.48496 * 109.47670 * 34.90997 * 26 24 22 29 29 H 1.48511 * 109.47301 * 154.91038 * 26 24 22 30 30 C 1.47076 * 108.28168 * 333.21466 * 21 18 17 31 31 C 1.38213 * 119.99979 * 270.16359 * 3 2 1 32 32 H 1.09000 * 109.47419 * 59.99632 * 1 2 3 33 33 H 1.08994 * 109.47018 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47025 * 299.99793 * 1 2 3 35 35 H 1.09003 * 109.47025 * 240.00207 * 2 1 3 36 36 H 1.08994 * 109.46991 * 120.00405 * 2 1 3 37 37 H 1.07995 * 120.00087 * 359.97438 * 4 3 2 38 38 H 1.08006 * 119.99669 * 179.97438 * 5 4 3 39 39 H 1.07999 * 120.00423 * 179.97438 * 6 5 4 40 40 H 1.09003 * 109.47093 * 330.00650 * 8 7 6 41 41 H 1.08992 * 109.47350 * 210.00048 * 8 7 6 42 42 H 0.96993 * 119.99603 * 0.02562 * 11 9 8 43 43 H 1.09004 * 109.86601 * 175.57184 * 14 12 11 44 44 H 1.08994 * 109.25756 * 55.19229 * 14 12 11 45 45 H 1.08999 * 111.23471 * 191.15595 * 17 15 14 46 46 H 1.09001 * 111.23394 * 315.55890 * 17 15 14 47 47 H 1.09001 * 109.53115 * 305.11503 * 20 12 11 48 48 H 1.08999 * 109.59595 * 184.92708 * 20 12 11 49 49 H 0.96998 * 119.99884 * 5.38066 * 25 24 22 50 50 H 1.08997 * 109.97910 * 120.69999 * 30 21 18 51 51 H 1.08999 * 109.97522 * 241.97944 * 30 21 18 52 52 H 1.07994 * 120.00319 * 0.05198 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2628 2.0725 1.1974 5 6 2.7229 3.3758 1.1973 6 6 2.9537 4.0275 0.0001 7 6 2.7247 3.3755 -1.1969 8 6 2.9756 4.0860 -2.5020 9 6 4.3994 3.8509 -2.9362 10 8 5.1376 3.1727 -2.2535 11 7 4.8522 4.3934 -4.0839 12 6 6.2362 4.1643 -4.5063 13 1 6.4484 3.0954 -4.4824 14 6 7.1835 4.8866 -3.5522 15 6 6.9461 6.4034 -3.6688 16 1 7.4302 6.9838 -2.8833 17 6 7.4000 6.8104 -5.0985 18 6 6.2367 6.2133 -5.9384 19 1 6.1913 6.6314 -6.9440 20 6 6.4232 4.6859 -5.9324 21 7 5.0266 6.5166 -5.1459 22 6 3.7595 6.6676 -5.6427 23 1 3.5265 6.3267 -6.6406 24 6 2.7745 7.2589 -4.8635 25 7 1.5061 6.9912 -5.0913 26 14 3.2488 8.4407 -3.4968 27 1 3.5601 7.6729 -2.2644 28 1 4.4433 9.2207 -3.9091 29 1 2.1199 9.3681 -3.2303 30 6 5.4158 6.6221 -3.7315 31 6 2.2594 2.0736 -1.1970 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8899 37 1 2.0825 1.5635 2.1326 38 1 2.9026 3.8850 2.1327 39 1 3.3128 5.0460 0.0001 40 1 2.8074 5.1551 -2.3719 41 1 2.2957 3.7010 -3.2619 42 1 4.2618 4.9354 -4.6302 43 1 8.2170 4.6576 -3.8124 44 1 6.9814 4.5626 -2.5313 45 1 7.4509 7.8942 -5.2030 46 1 8.3516 6.3464 -5.3577 47 1 5.6842 4.2259 -6.5884 48 1 7.4254 4.4397 -6.2832 49 1 1.2624 6.3225 -5.7504 50 1 5.1652 7.6115 -3.3491 51 1 4.9060 5.8564 -3.1469 52 1 2.0761 1.5657 -2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047098783.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:33 Heat of formation + Delta-G solvation = 52.719311 kcal Electronic energy + Delta-G solvation = -32054.872547 eV Core-core repulsion = 28214.193810 eV Total energy + Delta-G solvation = -3840.678737 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.03946 -39.39832 -37.88531 -34.33823 -33.82484 -33.28497 -32.12782 -31.11019 -30.88819 -29.37812 -28.49505 -26.82738 -25.21765 -23.84824 -23.14553 -22.30100 -21.57904 -20.61358 -20.01931 -19.25663 -18.84439 -17.57893 -16.72591 -16.29036 -15.71041 -15.61407 -15.31665 -14.80888 -14.51442 -14.28637 -13.84372 -13.67194 -13.53353 -13.36020 -13.17137 -12.94036 -12.80015 -12.61607 -12.31803 -12.21540 -12.07810 -11.90645 -11.83313 -11.61428 -11.60465 -11.40890 -11.15911 -11.08902 -10.89159 -10.87141 -10.66439 -10.57262 -10.33145 -9.97571 -9.72417 -9.49891 -9.26128 -9.10615 -8.64550 -8.51047 -8.31579 -7.74135 -7.15869 -6.54978 -3.47076 1.61425 1.66424 3.31302 3.32743 3.44874 3.61430 3.84214 4.23052 4.44028 4.80466 4.82130 4.89751 5.04207 5.09984 5.12376 5.22528 5.27611 5.29183 5.33321 5.36128 5.50209 5.59480 5.64745 5.66253 5.69315 5.71946 5.74956 5.80990 5.85643 5.89985 5.95249 5.98652 6.08894 6.09711 6.12702 6.14407 6.29830 6.34312 6.35291 6.37236 6.42499 6.55632 6.59120 6.70877 6.73304 6.74996 6.79832 6.88996 6.93928 7.27444 7.34671 7.57114 8.14533 8.52203 8.81650 9.09478 9.33860 10.05972 10.91156 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.004053 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.211794 B = 6906.670008 C = 7710.879528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.085 4.085 4 C -0.126 4.126 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.044 4.044 8 C -0.107 4.107 9 C 0.504 3.496 10 O -0.562 6.562 11 N -0.702 5.702 12 C 0.161 3.839 13 H 0.062 0.938 14 C -0.124 4.124 15 C -0.103 4.103 16 H 0.081 0.919 17 C -0.131 4.131 18 C 0.149 3.851 19 H 0.072 0.928 20 C -0.138 4.138 21 N -0.602 5.602 22 C -0.351 4.351 23 H 0.083 0.917 24 C -0.001 4.001 25 N -0.902 5.902 26 Si 1.052 2.948 27 H -0.292 1.292 28 H -0.292 1.292 29 H -0.299 1.299 30 C 0.094 3.906 31 C -0.104 4.104 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.438 0.562 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.267 0.733 50 H 0.015 0.985 51 H 0.075 0.925 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.511 -8.506 6.409 11.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.085 4.085 4 C -0.144 4.144 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.044 4.044 8 C -0.147 4.147 9 C 0.290 3.710 10 O -0.442 6.442 11 N -0.369 5.369 12 C 0.056 3.944 13 H 0.080 0.920 14 C -0.163 4.163 15 C -0.121 4.121 16 H 0.100 0.900 17 C -0.169 4.169 18 C 0.042 3.958 19 H 0.090 0.910 20 C -0.178 4.178 21 N -0.330 5.330 22 C -0.477 4.477 23 H 0.100 0.900 24 C -0.204 4.204 25 N -0.540 5.540 26 Si 0.885 3.115 27 H -0.220 1.220 28 H -0.220 1.220 29 H -0.227 1.227 30 C -0.031 4.031 31 C -0.122 4.122 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.293 0.707 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.077 0.923 50 H 0.032 0.968 51 H 0.093 0.907 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.220 -7.912 7.892 11.945 hybrid contribution 0.545 -0.421 -1.464 1.618 sum 4.764 -8.333 6.429 11.553 Atomic orbital electron populations 1.21751 0.94909 1.01363 1.02323 1.20504 0.95998 0.92946 1.02536 1.19762 0.99687 0.95945 0.93142 1.20882 1.01384 0.95076 0.97102 1.21010 0.99926 0.94931 0.97650 1.21005 0.99738 1.00043 0.92026 1.19367 0.97088 0.94009 0.93966 1.20702 0.95359 1.03055 0.95555 1.20421 0.89131 0.79443 0.81975 1.90612 1.58368 1.40217 1.54974 1.47750 1.13814 1.51414 1.23952 1.20498 0.82419 0.97973 0.93519 0.91976 1.22009 0.98493 0.94759 1.01018 1.22519 0.96639 0.95860 0.97128 0.90039 1.23090 0.97785 1.00297 0.95746 1.21711 0.86825 0.91958 0.95301 0.91009 1.22445 1.00819 0.99180 0.95313 1.45330 1.03801 1.82891 1.00957 1.20098 0.83569 1.40914 1.03168 0.89974 1.25854 0.92746 0.99852 1.01989 1.70911 1.16277 1.33232 1.33601 0.83968 0.73766 0.77723 0.76072 1.22000 1.21950 1.22708 1.22590 0.93592 0.98777 0.88107 1.20814 0.99887 0.94071 0.97407 0.92419 0.92682 0.92640 0.91218 0.91347 0.86690 0.86405 0.86361 0.87697 0.88200 0.70703 0.91827 0.90819 0.91842 0.91575 0.91875 0.91584 0.92259 0.96819 0.90735 0.86560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.89 37.16 0.37 -1.06 16 2 C -0.08 -0.91 6.06 -27.88 -0.17 -1.08 16 3 C -0.09 -1.19 5.13 -104.62 -0.54 -1.73 16 4 C -0.13 -1.70 9.70 -39.58 -0.38 -2.09 16 5 C -0.12 -1.68 10.05 -39.59 -0.40 -2.07 16 6 C -0.11 -1.83 9.70 -39.58 -0.38 -2.21 16 7 C -0.04 -0.77 4.37 -104.62 -0.46 -1.22 16 8 C -0.11 -2.01 5.80 -29.04 -0.17 -2.18 16 9 C 0.50 10.08 6.00 -10.98 -0.07 10.02 16 10 O -0.56 -12.16 14.69 5.56 0.08 -12.08 16 11 N -0.70 -13.78 2.78 -54.00 -0.15 -13.93 16 12 C 0.16 2.82 2.73 -68.13 -0.19 2.63 16 13 H 0.06 1.09 8.06 -51.93 -0.42 0.67 16 14 C -0.12 -2.06 5.14 -26.42 -0.14 -2.19 16 15 C -0.10 -1.77 4.33 -87.92 -0.38 -2.15 16 16 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 17 C -0.13 -2.08 6.20 -24.16 -0.15 -2.23 16 18 C 0.15 2.68 4.30 -65.48 -0.28 2.40 16 19 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 20 C -0.14 -2.21 5.42 -26.28 -0.14 -2.36 16 21 N -0.60 -12.97 1.61 -161.23 -0.26 -13.23 16 22 C -0.35 -8.70 8.59 -15.06 -0.13 -8.83 16 23 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 24 C 0.00 -0.02 5.43 -17.43 -0.09 -0.11 16 25 N -0.90 -24.97 13.70 55.49 0.76 -24.21 16 26 Si 1.05 25.20 24.76 -169.99 -4.21 20.99 16 27 H -0.29 -6.64 6.85 56.52 0.39 -6.26 16 28 H -0.29 -6.94 6.86 56.52 0.39 -6.55 16 29 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 30 C 0.09 1.95 3.69 -2.83 -0.01 1.94 16 31 C -0.10 -1.65 9.36 -39.58 -0.37 -2.02 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 36 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 37 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 39 H 0.12 1.92 8.06 -52.49 -0.42 1.49 16 40 H 0.10 2.11 7.97 -51.93 -0.41 1.69 16 41 H 0.10 1.79 8.08 -51.93 -0.42 1.37 16 42 H 0.44 9.33 3.97 -40.82 -0.16 9.17 16 43 H 0.06 0.90 7.97 -51.93 -0.41 0.49 16 44 H 0.07 1.36 6.69 -51.93 -0.35 1.01 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.07 0.88 7.76 -51.93 -0.40 0.48 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.07 0.88 8.01 -51.93 -0.42 0.47 16 49 H 0.27 7.29 8.73 -40.82 -0.36 6.94 16 50 H 0.01 0.32 3.45 -51.93 -0.18 0.14 16 51 H 0.08 1.63 3.71 -61.27 -0.23 1.40 16 52 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -28.40 388.12 -10.50 -38.90 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -8.50 Total: 14.25 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -4.08 Total: -16.54 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.35 Total: -51.38 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.08 Total: -12.08 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -4.21 Total: 20.99 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -28.40 -10.50 -38.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047098783.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.623 kcal (2) G-P(sol) polarization free energy of solvation -28.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds