Wall clock time and date at job start Wed Apr 1 2020 03:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.46819 * 2 1 4 4 C 1.38257 * 119.99787 * 90.00655 * 3 2 1 5 5 C 1.38210 * 119.99650 * 180.02562 * 4 3 2 6 6 C 1.38254 * 120.00544 * 359.95169 * 5 4 3 7 7 C 1.38216 * 119.99684 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00075 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.46875 * 89.99714 * 8 7 6 10 10 O 1.21283 * 120.00405 * 0.02562 * 9 8 7 11 11 N 1.34782 * 120.00026 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99963 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.32443 * 51.08240 * 12 11 9 14 14 C 1.52627 * 109.39766 * 291.49985 * 12 11 9 15 15 C 1.53972 * 108.85307 * 295.56005 * 14 12 11 16 16 H 1.09005 * 113.66965 * 168.18205 * 15 14 12 17 17 C 1.55424 * 106.41903 * 293.44958 * 15 14 12 18 18 C 1.55410 * 100.24951 * 73.22030 * 17 15 14 19 19 H 1.09001 * 112.47715 * 162.86365 * 18 17 15 20 20 C 1.52989 * 109.32468 * 170.72498 * 12 11 9 21 21 N 1.47796 * 104.13478 * 40.83305 * 18 17 15 22 22 C 1.36933 * 125.85373 * 153.48406 * 21 18 17 23 23 H 1.07996 * 120.00568 * 15.45941 * 22 21 18 24 24 C 1.38816 * 119.99396 * 195.46328 * 22 21 18 25 25 N 1.31622 * 119.99761 * 204.57144 * 24 22 21 26 26 Si 1.86796 * 119.99968 * 24.85207 * 24 22 21 27 27 H 1.48497 * 109.47182 * 274.90589 * 26 24 22 28 28 H 1.48496 * 109.47670 * 34.90997 * 26 24 22 29 29 H 1.48511 * 109.47301 * 154.91038 * 26 24 22 30 30 C 1.47076 * 108.28168 * 333.21466 * 21 18 17 31 31 C 1.38213 * 119.99979 * 270.16359 * 3 2 1 32 32 H 1.09000 * 109.47419 * 59.99632 * 1 2 3 33 33 H 1.08994 * 109.47018 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47025 * 299.99793 * 1 2 3 35 35 H 1.09003 * 109.47025 * 240.00207 * 2 1 3 36 36 H 1.08994 * 109.46991 * 120.00405 * 2 1 3 37 37 H 1.07995 * 120.00087 * 359.97438 * 4 3 2 38 38 H 1.08006 * 119.99669 * 179.97438 * 5 4 3 39 39 H 1.07999 * 120.00423 * 179.97438 * 6 5 4 40 40 H 1.09003 * 109.47093 * 330.00650 * 8 7 6 41 41 H 1.08992 * 109.47350 * 210.00048 * 8 7 6 42 42 H 0.96993 * 119.99603 * 0.02562 * 11 9 8 43 43 H 1.09004 * 109.86601 * 175.57184 * 14 12 11 44 44 H 1.08994 * 109.25756 * 55.19229 * 14 12 11 45 45 H 1.08999 * 111.23471 * 191.15595 * 17 15 14 46 46 H 1.09001 * 111.23394 * 315.55890 * 17 15 14 47 47 H 1.09001 * 109.53115 * 305.11503 * 20 12 11 48 48 H 1.08999 * 109.59595 * 184.92708 * 20 12 11 49 49 H 0.96998 * 119.99884 * 5.38066 * 25 24 22 50 50 H 1.08997 * 109.97910 * 120.69999 * 30 21 18 51 51 H 1.08999 * 109.97522 * 241.97944 * 30 21 18 52 52 H 1.07994 * 120.00319 * 0.05198 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2628 2.0725 1.1974 5 6 2.7229 3.3758 1.1973 6 6 2.9537 4.0275 0.0001 7 6 2.7247 3.3755 -1.1969 8 6 2.9756 4.0860 -2.5020 9 6 4.3994 3.8509 -2.9362 10 8 5.1376 3.1727 -2.2535 11 7 4.8522 4.3934 -4.0839 12 6 6.2362 4.1643 -4.5063 13 1 6.4484 3.0954 -4.4824 14 6 7.1835 4.8866 -3.5522 15 6 6.9461 6.4034 -3.6688 16 1 7.4302 6.9838 -2.8833 17 6 7.4000 6.8104 -5.0985 18 6 6.2367 6.2133 -5.9384 19 1 6.1913 6.6314 -6.9440 20 6 6.4232 4.6859 -5.9324 21 7 5.0266 6.5166 -5.1459 22 6 3.7595 6.6676 -5.6427 23 1 3.5265 6.3267 -6.6406 24 6 2.7745 7.2589 -4.8635 25 7 1.5061 6.9912 -5.0913 26 14 3.2488 8.4407 -3.4968 27 1 3.5601 7.6729 -2.2644 28 1 4.4433 9.2207 -3.9091 29 1 2.1199 9.3681 -3.2303 30 6 5.4158 6.6221 -3.7315 31 6 2.2594 2.0736 -1.1970 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8899 37 1 2.0825 1.5635 2.1326 38 1 2.9026 3.8850 2.1327 39 1 3.3128 5.0460 0.0001 40 1 2.8074 5.1551 -2.3719 41 1 2.2957 3.7010 -3.2619 42 1 4.2618 4.9354 -4.6302 43 1 8.2170 4.6576 -3.8124 44 1 6.9814 4.5626 -2.5313 45 1 7.4509 7.8942 -5.2030 46 1 8.3516 6.3464 -5.3577 47 1 5.6842 4.2259 -6.5884 48 1 7.4254 4.4397 -6.2832 49 1 1.2624 6.3225 -5.7504 50 1 5.1652 7.6115 -3.3491 51 1 4.9060 5.8564 -3.1469 52 1 2.0761 1.5657 -2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047098783.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:32 Heat of formation + Delta-G solvation = 39.760565 kcal Electronic energy + Delta-G solvation = -32055.434480 eV Core-core repulsion = 28214.193810 eV Total energy + Delta-G solvation = -3841.240670 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.53933 -40.63593 -39.36121 -35.72025 -35.27834 -34.84507 -33.44593 -32.83400 -32.30328 -30.46644 -29.90212 -28.19594 -26.84933 -24.85872 -24.80460 -23.61071 -22.81012 -22.01525 -21.43245 -20.72807 -20.29913 -19.45589 -18.28432 -17.49192 -17.28332 -17.00262 -16.62302 -16.15472 -15.94685 -15.77854 -15.35219 -15.23284 -14.72145 -14.67853 -14.44795 -14.21850 -14.13696 -13.96142 -13.77576 -13.66414 -13.50728 -13.21747 -13.13177 -12.95241 -12.89017 -12.67303 -12.60888 -12.50876 -12.47288 -12.15287 -11.98140 -11.70174 -11.64989 -11.58308 -11.32296 -11.09262 -10.95395 -10.67165 -10.58645 -9.69884 -9.50942 -9.32750 -8.97071 -8.61233 -5.45627 0.42063 0.48817 1.38266 1.45712 1.65390 1.72213 2.46736 2.48246 2.93582 3.04786 3.30728 3.67745 3.69362 3.79480 3.83074 3.87906 3.97959 4.13048 4.19706 4.23708 4.25473 4.27419 4.32706 4.36244 4.47609 4.50288 4.56201 4.58621 4.67150 4.68044 4.73744 4.76668 4.83347 4.92406 4.97135 4.99650 5.04540 5.07980 5.13144 5.15564 5.18456 5.21016 5.35549 5.38959 5.40861 5.43371 5.54707 5.67373 5.68429 5.71542 5.83557 6.12865 6.14815 6.79941 6.91539 7.44592 7.47234 8.15105 8.86239 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.004053 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.211794 B = 6906.670008 C = 7710.879528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.085 4.085 4 C -0.124 4.124 5 C -0.116 4.116 6 C -0.135 4.135 7 C -0.067 4.067 8 C -0.101 4.101 9 C 0.505 3.495 10 O -0.578 6.578 11 N -0.706 5.706 12 C 0.152 3.848 13 H 0.063 0.937 14 C -0.115 4.115 15 C -0.099 4.099 16 H 0.100 0.900 17 C -0.117 4.117 18 C 0.138 3.862 19 H 0.072 0.928 20 C -0.126 4.126 21 N -0.613 5.613 22 C -0.324 4.324 23 H 0.061 0.939 24 C -0.040 4.040 25 N -0.937 5.937 26 Si 1.082 2.918 27 H -0.283 1.283 28 H -0.286 1.286 29 H -0.312 1.312 30 C 0.085 3.915 31 C -0.122 4.122 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.429 0.571 43 H 0.100 0.900 44 H 0.051 0.949 45 H 0.061 0.939 46 H 0.106 0.894 47 H 0.049 0.951 48 H 0.107 0.893 49 H 0.258 0.742 50 H -0.003 1.003 51 H 0.062 0.938 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.998 -9.842 7.622 14.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.085 4.085 4 C -0.142 4.142 5 C -0.134 4.134 6 C -0.153 4.153 7 C -0.068 4.068 8 C -0.140 4.140 9 C 0.291 3.709 10 O -0.460 6.460 11 N -0.371 5.371 12 C 0.047 3.953 13 H 0.081 0.919 14 C -0.153 4.153 15 C -0.118 4.118 16 H 0.118 0.882 17 C -0.155 4.155 18 C 0.032 3.968 19 H 0.090 0.910 20 C -0.166 4.166 21 N -0.340 5.340 22 C -0.452 4.452 23 H 0.079 0.921 24 C -0.238 4.238 25 N -0.579 5.579 26 Si 0.914 3.086 27 H -0.211 1.211 28 H -0.213 1.213 29 H -0.241 1.241 30 C -0.039 4.039 31 C -0.140 4.140 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.167 0.833 38 H 0.163 0.837 39 H 0.128 0.872 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.282 0.718 43 H 0.118 0.882 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.125 0.875 47 H 0.068 0.932 48 H 0.125 0.875 49 H 0.067 0.933 50 H 0.015 0.985 51 H 0.079 0.921 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.767 -9.256 9.093 14.634 hybrid contribution -0.200 -0.086 -1.883 1.895 sum 6.566 -9.342 7.211 13.505 Atomic orbital electron populations 1.21731 0.93957 1.02535 1.01846 1.20575 0.96708 0.90986 1.03559 1.20159 0.98430 0.97359 0.92547 1.21307 0.99912 0.94721 0.98265 1.21346 0.98865 0.95450 0.97711 1.21114 1.01183 1.00133 0.92897 1.19385 0.98950 0.94964 0.93453 1.20600 0.94899 1.01831 0.96707 1.20530 0.89312 0.79126 0.81916 1.90578 1.58818 1.41123 1.55482 1.47840 1.14876 1.50838 1.23550 1.20771 0.81406 0.98410 0.94683 0.91869 1.21947 1.00069 0.93844 0.99448 1.22573 0.93630 0.96728 0.98833 0.88213 1.23057 0.98316 1.00438 0.93648 1.21993 0.86126 0.93430 0.95270 0.91025 1.22364 1.02820 0.97265 0.94144 1.45347 1.03975 1.82623 1.02103 1.19904 0.85246 1.38338 1.01687 0.92105 1.26398 0.92664 1.01278 1.03501 1.70958 1.17394 1.34656 1.34870 0.83518 0.73095 0.76587 0.75384 1.21081 1.21317 1.24109 1.22663 0.96672 0.97274 0.87309 1.20950 1.00678 0.93756 0.98593 0.93747 0.90699 0.92301 0.91224 0.89306 0.83276 0.83690 0.87196 0.89886 0.88619 0.71819 0.88158 0.92988 0.92008 0.87543 0.93177 0.87463 0.93254 0.98529 0.92108 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.89 71.98 0.71 -1.82 16 2 C -0.08 -1.61 6.06 29.85 0.18 -1.43 16 3 C -0.08 -2.28 5.13 -19.86 -0.10 -2.38 16 4 C -0.12 -3.08 9.70 22.27 0.22 -2.86 16 5 C -0.12 -3.18 10.05 22.27 0.22 -2.96 16 6 C -0.14 -4.61 9.70 22.27 0.22 -4.40 16 7 C -0.07 -2.45 4.37 -19.87 -0.09 -2.54 16 8 C -0.10 -4.03 5.80 29.10 0.17 -3.87 16 9 C 0.50 20.87 6.00 87.66 0.53 21.39 16 10 O -0.58 -25.47 14.69 -3.04 -0.04 -25.51 16 11 N -0.71 -28.10 2.78 -443.13 -1.23 -29.33 16 12 C 0.15 5.04 2.73 44.86 0.12 5.16 16 13 H 0.06 2.10 8.06 -2.38 -0.02 2.08 16 14 C -0.11 -3.47 5.14 30.80 0.16 -3.31 16 15 C -0.10 -3.13 4.33 -9.05 -0.04 -3.17 16 16 H 0.10 2.83 8.14 -2.38 -0.02 2.81 16 17 C -0.12 -3.23 6.20 32.26 0.20 -3.03 16 18 C 0.14 4.64 4.30 45.87 0.20 4.83 16 19 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 20 C -0.13 -3.72 5.42 30.89 0.17 -3.56 16 21 N -0.61 -26.24 1.61 -664.00 -1.07 -27.31 16 22 C -0.32 -16.47 8.59 84.03 0.72 -15.75 16 23 H 0.06 3.32 8.06 -2.91 -0.02 3.30 16 24 C -0.04 -2.14 5.43 84.86 0.46 -1.68 16 25 N -0.94 -54.43 13.70 21.65 0.30 -54.13 16 26 Si 1.08 52.76 24.76 68.60 1.70 54.46 16 27 H -0.28 -13.20 6.85 99.48 0.68 -12.52 16 28 H -0.29 -13.47 6.86 99.48 0.68 -12.79 16 29 H -0.31 -15.73 7.11 99.48 0.71 -15.02 16 30 C 0.09 3.51 3.69 86.85 0.32 3.83 16 31 C -0.12 -3.96 9.36 22.27 0.21 -3.75 16 32 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.39 8.09 -2.39 -0.02 1.37 16 36 H 0.09 1.43 8.09 -2.39 -0.02 1.41 16 37 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 38 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 39 H 0.11 3.78 8.06 -2.91 -0.02 3.76 16 40 H 0.08 3.63 7.97 -2.39 -0.02 3.61 16 41 H 0.10 3.77 8.08 -2.39 -0.02 3.75 16 42 H 0.43 18.82 3.97 -92.71 -0.37 18.45 16 43 H 0.10 2.33 7.97 -2.39 -0.02 2.31 16 44 H 0.05 1.82 6.69 -2.39 -0.02 1.81 16 45 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.11 2.17 7.76 -2.39 -0.02 2.15 16 47 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.11 2.33 8.01 -2.39 -0.02 2.31 16 49 H 0.26 14.91 8.73 -92.71 -0.81 14.10 16 50 H 0.00 -0.12 3.45 -2.39 -0.01 -0.12 16 51 H 0.06 2.71 3.71 -20.83 -0.08 2.64 16 52 H 0.12 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -64.40 388.12 4.61 -59.79 By element: Atomic # 1 Polarization: 42.92 SS G_CDS: 0.38 Total: 43.30 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: 4.57 Total: -21.27 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -2.00 Total: -110.77 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.04 Total: -25.51 kcal Atomic # 14 Polarization: 52.76 SS G_CDS: 1.70 Total: 54.46 kcal Total: -64.40 4.61 -59.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047098783.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.550 kcal (2) G-P(sol) polarization free energy of solvation -64.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds