Wall clock time and date at job start Wed Apr 1 2020 02:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38262 * 119.99835 * 2 1 4 4 C 1.38207 * 119.99565 * 180.02562 * 3 2 1 5 5 C 1.38258 * 120.00543 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99995 * 179.97438 * 5 4 3 7 7 C 1.38212 * 119.99834 * 359.95063 * 5 4 3 8 8 C 1.50700 * 120.00176 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.47003 * 85.00182 * 8 7 5 10 10 O 1.21276 * 120.00308 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99811 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99891 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.32158 * 34.64160 * 12 11 9 14 14 C 1.53030 * 109.18075 * 154.19587 * 12 11 9 15 15 C 1.53966 * 108.82302 * 175.58360 * 14 12 11 16 16 H 1.09006 * 112.99530 * 168.08863 * 15 14 12 17 17 C 1.55421 * 106.42076 * 293.81994 * 15 14 12 18 18 C 1.55172 * 100.35057 * 73.38112 * 17 15 14 19 19 H 1.09004 * 113.04954 * 162.99679 * 18 17 15 20 20 C 1.52984 * 109.32419 * 274.99776 * 12 11 9 21 21 N 1.47783 * 104.25897 * 40.55248 * 18 17 15 22 22 C 1.36939 * 125.85928 * 153.53075 * 21 18 17 23 23 H 1.07997 * 119.99728 * 359.72826 * 22 21 18 24 24 C 1.38815 * 119.99845 * 180.02562 * 22 21 18 25 25 N 1.31619 * 119.99884 * 359.72042 * 24 22 21 26 26 Si 1.86798 * 119.99660 * 179.72678 * 24 22 21 27 27 H 1.48493 * 109.47326 * 89.99909 * 26 24 22 28 28 H 1.48506 * 109.46545 * 209.99659 * 26 24 22 29 29 H 1.48498 * 109.47210 * 329.99370 * 26 24 22 30 30 C 1.47083 * 108.28208 * 333.79922 * 21 18 17 31 31 C 1.38213 * 120.00082 * 180.20985 * 2 1 3 32 32 H 1.08995 * 109.47430 * 89.99802 * 1 2 3 33 33 H 1.08998 * 109.47196 * 210.00233 * 1 2 3 34 34 H 1.09008 * 109.46901 * 329.99723 * 1 2 3 35 35 H 1.07998 * 120.00006 * 0.02562 * 3 2 1 36 36 H 1.08005 * 119.99885 * 179.97438 * 4 3 2 37 37 H 1.09003 * 109.47304 * 269.97214 * 6 5 4 38 38 H 1.08995 * 109.47444 * 29.97577 * 6 5 4 39 39 H 1.09005 * 109.47267 * 149.97761 * 6 5 4 40 40 H 1.08998 * 109.46986 * 325.00206 * 8 7 5 41 41 H 1.08997 * 109.47258 * 205.00708 * 8 7 5 42 42 H 0.96998 * 119.99922 * 359.97438 * 11 9 8 43 43 H 1.08993 * 109.58056 * 295.38884 * 14 12 11 44 44 H 1.09003 * 109.57968 * 55.78761 * 14 12 11 45 45 H 1.09000 * 111.23434 * 315.60694 * 17 15 14 46 46 H 1.09003 * 111.24328 * 191.15307 * 17 15 14 47 47 H 1.09000 * 109.52954 * 64.93543 * 20 12 11 48 48 H 1.09001 * 109.59204 * 304.74790 * 20 12 11 49 49 H 0.97000 * 119.99517 * 180.02562 * 25 24 22 50 50 H 1.08998 * 109.97688 * 120.20204 * 30 21 18 51 51 H 1.09004 * 109.97487 * 241.48071 * 30 21 18 52 52 H 1.07994 * 119.99883 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 5.7787 0.0001 -0.0028 7 6 3.5807 -1.1969 -0.0011 8 6 4.3342 -2.5021 -0.0017 9 6 4.6936 -2.8752 1.4134 10 8 4.3694 -2.1528 2.3320 11 7 5.3753 -4.0118 1.6582 12 6 5.7242 -4.3748 3.0340 13 1 4.9279 -4.0527 3.7049 14 6 5.8824 -5.8940 3.1283 15 6 6.3569 -6.2568 4.5474 16 1 6.2952 -7.3248 4.7570 17 6 7.7872 -5.6673 4.6966 18 6 7.4543 -4.1572 4.8252 19 1 8.2792 -3.5714 5.2309 20 6 7.0290 -3.6788 3.4258 21 7 6.2568 -4.1208 5.6904 22 6 5.8813 -3.0798 6.4970 23 1 6.4853 -2.1856 6.5409 24 6 4.7276 -3.1764 7.2628 25 7 3.9917 -4.2664 7.2096 26 14 4.2194 -1.7594 8.3688 27 1 3.3416 -0.8310 7.6122 28 1 3.4831 -2.2889 9.5448 29 1 5.4295 -1.0320 8.8290 30 6 5.5411 -5.3970 5.5415 31 6 2.1981 -1.1969 -0.0044 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 1.6583 2.1327 0.0004 36 1 4.1204 2.1327 -0.0010 37 1 6.1413 0.0001 -1.0307 38 1 6.1424 0.8900 0.5108 39 1 6.1425 -0.8899 0.5107 40 1 5.2444 -2.3958 -0.5918 41 1 3.7090 -3.2824 -0.4356 42 1 5.6343 -4.5897 0.9235 43 1 4.9243 -6.3741 2.9296 44 1 6.6199 -6.2304 2.3996 45 1 8.3900 -5.8647 3.8102 46 1 8.2768 -6.0415 5.5958 47 1 6.8762 -2.5997 3.4404 48 1 7.8068 -3.9270 2.7037 49 1 3.1853 -4.3337 7.7445 50 1 5.4743 -5.9012 6.5056 51 1 4.5418 -5.2193 5.1439 52 1 1.6581 -2.1322 -0.0082 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047138762.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:58 Heat of formation + Delta-G solvation = 5.382344 kcal Electronic energy + Delta-G solvation = -31043.289252 eV Core-core repulsion = 27200.557831 eV Total energy + Delta-G solvation = -3842.731421 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.26643 -39.56912 -38.27638 -34.51250 -34.09892 -32.77618 -32.30421 -30.63922 -29.76313 -29.28212 -28.50084 -27.24356 -25.26072 -24.76912 -23.08328 -22.49938 -21.63507 -20.41199 -19.72787 -19.36283 -18.53762 -17.00303 -16.63679 -16.06141 -15.98259 -15.64759 -14.80082 -14.63167 -14.39656 -14.31565 -13.93695 -13.66922 -13.42616 -13.28862 -13.01562 -12.81419 -12.77754 -12.65889 -12.64661 -12.13861 -11.92980 -11.84334 -11.77196 -11.64014 -11.51771 -11.45127 -11.19082 -10.91671 -10.88453 -10.66766 -10.63815 -10.47322 -9.92830 -9.82142 -9.69364 -9.61864 -9.36753 -9.26188 -8.67252 -8.50927 -8.47227 -8.30409 -6.72771 -5.59665 -2.91515 1.39221 1.47099 3.05434 3.48297 3.50342 3.55602 3.56429 3.89566 4.61340 4.64463 4.77919 4.90457 5.02995 5.13976 5.19653 5.22772 5.28143 5.28604 5.39649 5.46233 5.51056 5.53978 5.57066 5.61539 5.64295 5.67810 5.76301 5.77189 5.92978 5.93650 5.94471 6.07981 6.11903 6.13739 6.16304 6.17680 6.26155 6.27004 6.49401 6.60526 6.63665 6.65789 6.71210 6.74802 6.93141 6.95458 7.03145 7.09372 7.15551 7.66136 7.67266 7.91042 7.94475 8.35805 8.69626 9.33531 9.93993 10.59736 11.52492 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010054 B = 0.003720 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.416304 B = 7524.633038 C = 8974.983344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.120 4.120 4 C -0.117 4.117 5 C -0.073 4.073 6 C -0.115 4.115 7 C -0.058 4.058 8 C -0.104 4.104 9 C 0.505 3.495 10 O -0.511 6.511 11 N -0.732 5.732 12 C 0.147 3.853 13 H 0.114 0.886 14 C -0.111 4.111 15 C -0.119 4.119 16 H 0.081 0.919 17 C -0.127 4.127 18 C 0.157 3.843 19 H 0.064 0.936 20 C -0.134 4.134 21 N -0.595 5.595 22 C -0.220 4.220 23 H 0.075 0.925 24 C -0.006 4.006 25 N -0.923 5.923 26 Si 0.907 3.093 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.282 1.282 30 C 0.181 3.819 31 C -0.103 4.103 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.389 0.611 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.042 0.958 49 H 0.250 0.750 50 H 0.043 0.957 51 H 0.046 0.954 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.238 1.512 -19.733 19.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.135 4.135 5 C -0.073 4.073 6 C -0.172 4.172 7 C -0.058 4.058 8 C -0.144 4.144 9 C 0.289 3.711 10 O -0.384 6.384 11 N -0.383 5.383 12 C 0.044 3.956 13 H 0.132 0.868 14 C -0.149 4.149 15 C -0.139 4.139 16 H 0.099 0.901 17 C -0.165 4.165 18 C 0.048 3.952 19 H 0.082 0.918 20 C -0.176 4.176 21 N -0.319 5.319 22 C -0.348 4.348 23 H 0.093 0.907 24 C -0.202 4.202 25 N -0.571 5.571 26 Si 0.738 3.262 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.208 1.208 30 C 0.056 3.944 31 C -0.122 4.122 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.221 0.779 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.061 0.939 51 H 0.064 0.936 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.790 2.114 -18.861 18.996 hybrid contribution -0.255 0.461 0.225 0.573 sum 0.536 2.575 -18.637 18.821 Atomic orbital electron populations 1.20761 0.91390 1.02853 1.01868 1.19809 0.95903 0.93111 1.00504 1.20948 0.94156 0.97326 1.01330 1.20930 0.94143 0.97276 1.01146 1.19654 0.95849 0.92579 0.99254 1.20804 0.91497 1.03296 1.01568 1.19102 0.93287 0.93213 1.00226 1.20716 1.01650 0.96248 0.95816 1.20389 0.78445 0.81588 0.90663 1.90839 1.51919 1.50000 1.45688 1.46252 1.58066 1.23993 1.09957 1.21165 0.99512 0.93486 0.81404 0.86813 1.21954 1.00398 0.94985 0.97569 1.22832 0.96512 0.99272 0.95283 0.90067 1.22965 0.96048 0.97328 1.00204 1.21515 0.90750 0.93409 0.89511 0.91800 1.22595 0.95758 1.00638 0.98561 1.44602 1.23630 1.14867 1.48824 1.19001 1.05690 0.93844 1.16259 0.90670 1.24710 0.97599 0.97474 1.00386 1.69940 1.16697 1.26365 1.44144 0.86180 0.78318 0.81692 0.80002 1.21623 1.21837 1.20811 1.21295 0.93271 0.84691 0.95138 1.20825 0.93287 0.97583 1.00457 0.91494 0.91556 0.91680 0.86387 0.86264 0.91445 0.91484 0.91482 0.88328 0.88510 0.77861 0.92267 0.92866 0.92274 0.91916 0.92389 0.93959 0.93967 0.93881 0.93583 0.86349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.01 36.01 0.36 -0.77 16 2 C -0.09 -1.20 5.88 -104.62 -0.62 -1.81 16 3 C -0.12 -1.50 9.70 -39.58 -0.38 -1.88 16 4 C -0.12 -1.51 9.70 -39.59 -0.38 -1.89 16 5 C -0.07 -1.00 5.88 -104.63 -0.62 -1.62 16 6 C -0.12 -1.35 9.22 36.00 0.33 -1.02 16 7 C -0.06 -0.80 4.37 -104.62 -0.46 -1.26 16 8 C -0.10 -1.24 5.15 -29.04 -0.15 -1.39 16 9 C 0.50 8.33 7.01 -10.99 -0.08 8.25 16 10 O -0.51 -11.49 15.69 5.56 0.09 -11.41 16 11 N -0.73 -10.83 5.06 -53.80 -0.27 -11.10 16 12 C 0.15 2.72 2.08 -67.92 -0.14 2.58 16 13 H 0.11 2.81 5.40 -51.93 -0.28 2.53 16 14 C -0.11 -1.76 4.96 -26.21 -0.13 -1.89 16 15 C -0.12 -2.15 4.32 -87.94 -0.38 -2.53 16 16 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 17 C -0.13 -2.18 6.18 -24.30 -0.15 -2.33 16 18 C 0.16 3.22 4.30 -65.62 -0.28 2.94 16 19 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 20 C -0.13 -2.53 5.28 -26.28 -0.14 -2.67 16 21 N -0.59 -15.14 2.42 -161.38 -0.39 -15.53 16 22 C -0.22 -6.32 10.29 -15.06 -0.15 -6.47 16 23 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 24 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 25 N -0.92 -27.95 10.35 55.49 0.57 -27.37 16 26 Si 0.91 23.49 29.55 -169.99 -5.02 18.46 16 27 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 28 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 29 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 30 C 0.18 4.36 4.10 -2.83 -0.01 4.34 16 31 C -0.10 -1.41 9.34 -39.58 -0.37 -1.78 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 34 H 0.06 0.60 8.09 -51.92 -0.42 0.18 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 39 H 0.07 0.87 6.16 -51.93 -0.32 0.55 16 40 H 0.10 0.93 6.99 -51.93 -0.36 0.57 16 41 H 0.10 0.91 8.05 -51.93 -0.42 0.50 16 42 H 0.39 4.19 8.60 -40.82 -0.35 3.83 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.05 0.70 7.97 -51.93 -0.41 0.28 16 45 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 48 H 0.04 0.67 8.00 -51.93 -0.42 0.26 16 49 H 0.25 7.41 8.31 -40.82 -0.34 7.08 16 50 H 0.04 1.16 7.42 -51.93 -0.39 0.78 16 51 H 0.05 1.25 6.16 -51.93 -0.32 0.93 16 52 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 401.72 15.07 6.05 6.05 Total: -1.00 -34.94 401.72 -11.52 -46.46 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -8.70 Total: 5.92 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -3.84 Total: -11.48 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.09 Total: -54.01 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.02 Total: 18.46 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.94 -11.52 -46.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047138762.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.843 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds