Wall clock time and date at job start Wed Apr 1 2020 02:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38262 * 119.99835 * 2 1 4 4 C 1.38207 * 119.99565 * 180.02562 * 3 2 1 5 5 C 1.38258 * 120.00543 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99995 * 179.97438 * 5 4 3 7 7 C 1.38212 * 119.99834 * 359.95063 * 5 4 3 8 8 C 1.50700 * 120.00176 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.47003 * 85.00182 * 8 7 5 10 10 O 1.21276 * 120.00308 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99811 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99891 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.32158 * 34.64160 * 12 11 9 14 14 C 1.53030 * 109.18075 * 154.19587 * 12 11 9 15 15 C 1.53966 * 108.82302 * 175.58360 * 14 12 11 16 16 H 1.09006 * 112.99530 * 168.08863 * 15 14 12 17 17 C 1.55421 * 106.42076 * 293.81994 * 15 14 12 18 18 C 1.55172 * 100.35057 * 73.38112 * 17 15 14 19 19 H 1.09004 * 113.04954 * 162.99679 * 18 17 15 20 20 C 1.52984 * 109.32419 * 274.99776 * 12 11 9 21 21 N 1.47783 * 104.25897 * 40.55248 * 18 17 15 22 22 C 1.36939 * 125.85928 * 153.53075 * 21 18 17 23 23 H 1.07997 * 119.99728 * 359.72826 * 22 21 18 24 24 C 1.38815 * 119.99845 * 180.02562 * 22 21 18 25 25 N 1.31619 * 119.99884 * 359.72042 * 24 22 21 26 26 Si 1.86798 * 119.99660 * 179.72678 * 24 22 21 27 27 H 1.48493 * 109.47326 * 89.99909 * 26 24 22 28 28 H 1.48506 * 109.46545 * 209.99659 * 26 24 22 29 29 H 1.48498 * 109.47210 * 329.99370 * 26 24 22 30 30 C 1.47083 * 108.28208 * 333.79922 * 21 18 17 31 31 C 1.38213 * 120.00082 * 180.20985 * 2 1 3 32 32 H 1.08995 * 109.47430 * 89.99802 * 1 2 3 33 33 H 1.08998 * 109.47196 * 210.00233 * 1 2 3 34 34 H 1.09008 * 109.46901 * 329.99723 * 1 2 3 35 35 H 1.07998 * 120.00006 * 0.02562 * 3 2 1 36 36 H 1.08005 * 119.99885 * 179.97438 * 4 3 2 37 37 H 1.09003 * 109.47304 * 269.97214 * 6 5 4 38 38 H 1.08995 * 109.47444 * 29.97577 * 6 5 4 39 39 H 1.09005 * 109.47267 * 149.97761 * 6 5 4 40 40 H 1.08998 * 109.46986 * 325.00206 * 8 7 5 41 41 H 1.08997 * 109.47258 * 205.00708 * 8 7 5 42 42 H 0.96998 * 119.99922 * 359.97438 * 11 9 8 43 43 H 1.08993 * 109.58056 * 295.38884 * 14 12 11 44 44 H 1.09003 * 109.57968 * 55.78761 * 14 12 11 45 45 H 1.09000 * 111.23434 * 315.60694 * 17 15 14 46 46 H 1.09003 * 111.24328 * 191.15307 * 17 15 14 47 47 H 1.09000 * 109.52954 * 64.93543 * 20 12 11 48 48 H 1.09001 * 109.59204 * 304.74790 * 20 12 11 49 49 H 0.97000 * 119.99517 * 180.02562 * 25 24 22 50 50 H 1.08998 * 109.97688 * 120.20204 * 30 21 18 51 51 H 1.09004 * 109.97487 * 241.48071 * 30 21 18 52 52 H 1.07994 * 119.99883 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 5.7787 0.0001 -0.0028 7 6 3.5807 -1.1969 -0.0011 8 6 4.3342 -2.5021 -0.0017 9 6 4.6936 -2.8752 1.4134 10 8 4.3694 -2.1528 2.3320 11 7 5.3753 -4.0118 1.6582 12 6 5.7242 -4.3748 3.0340 13 1 4.9279 -4.0527 3.7049 14 6 5.8824 -5.8940 3.1283 15 6 6.3569 -6.2568 4.5474 16 1 6.2952 -7.3248 4.7570 17 6 7.7872 -5.6673 4.6966 18 6 7.4543 -4.1572 4.8252 19 1 8.2792 -3.5714 5.2309 20 6 7.0290 -3.6788 3.4258 21 7 6.2568 -4.1208 5.6904 22 6 5.8813 -3.0798 6.4970 23 1 6.4853 -2.1856 6.5409 24 6 4.7276 -3.1764 7.2628 25 7 3.9917 -4.2664 7.2096 26 14 4.2194 -1.7594 8.3688 27 1 3.3416 -0.8310 7.6122 28 1 3.4831 -2.2889 9.5448 29 1 5.4295 -1.0320 8.8290 30 6 5.5411 -5.3970 5.5415 31 6 2.1981 -1.1969 -0.0044 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 1.6583 2.1327 0.0004 36 1 4.1204 2.1327 -0.0010 37 1 6.1413 0.0001 -1.0307 38 1 6.1424 0.8900 0.5108 39 1 6.1425 -0.8899 0.5107 40 1 5.2444 -2.3958 -0.5918 41 1 3.7090 -3.2824 -0.4356 42 1 5.6343 -4.5897 0.9235 43 1 4.9243 -6.3741 2.9296 44 1 6.6199 -6.2304 2.3996 45 1 8.3900 -5.8647 3.8102 46 1 8.2768 -6.0415 5.5958 47 1 6.8762 -2.5997 3.4404 48 1 7.8068 -3.9270 2.7037 49 1 3.1853 -4.3337 7.7445 50 1 5.4743 -5.9012 6.5056 51 1 4.5418 -5.2193 5.1439 52 1 1.6581 -2.1322 -0.0082 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047138762.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:57 Heat of formation + Delta-G solvation = -15.830521 kcal Electronic energy + Delta-G solvation = -31044.209111 eV Core-core repulsion = 27200.557831 eV Total energy + Delta-G solvation = -3843.651280 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.61087 -40.80661 -39.60455 -36.06420 -35.10920 -34.67345 -33.33826 -32.35197 -31.36477 -30.16275 -30.08472 -28.36113 -27.20231 -25.66882 -24.92800 -23.66284 -22.81221 -21.67300 -21.23527 -20.83129 -20.00632 -18.93732 -17.96141 -17.42229 -17.04865 -16.72489 -16.56910 -16.12362 -15.80233 -15.62451 -15.34752 -15.07199 -14.82625 -14.31794 -14.15784 -14.04594 -13.97265 -13.80669 -13.66065 -13.59759 -13.45476 -13.34472 -13.22850 -13.02404 -12.87370 -12.76616 -12.62437 -12.53758 -12.36437 -12.13702 -11.88818 -11.84054 -11.82172 -11.64031 -11.37172 -11.14980 -10.98143 -10.72239 -10.68576 -9.90480 -9.68152 -9.26349 -8.82568 -7.84332 -5.15280 0.40676 0.48053 1.35543 1.40659 1.46184 1.78321 2.30398 2.47309 2.86564 3.34492 3.66394 3.66794 3.83714 3.85887 3.91709 4.00128 4.06873 4.11503 4.21218 4.29737 4.34889 4.40592 4.46326 4.51843 4.55007 4.59756 4.65591 4.68096 4.69071 4.77703 4.80224 4.81890 4.83367 4.85482 4.88365 5.08747 5.11300 5.20665 5.22876 5.32508 5.35818 5.36022 5.48326 5.49258 5.51859 5.52387 5.67577 5.69769 5.72744 5.78376 5.85270 6.15470 6.23098 6.74971 7.13954 7.49519 7.82901 8.46529 9.25823 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010054 B = 0.003720 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.416304 B = 7524.633038 C = 8974.983344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.108 4.108 3 C -0.131 4.131 4 C -0.131 4.131 5 C -0.094 4.094 6 C -0.111 4.111 7 C -0.078 4.078 8 C -0.092 4.092 9 C 0.502 3.498 10 O -0.582 6.582 11 N -0.713 5.713 12 C 0.154 3.846 13 H 0.042 0.958 14 C -0.100 4.100 15 C -0.108 4.108 16 H 0.109 0.891 17 C -0.109 4.109 18 C 0.139 3.861 19 H 0.061 0.939 20 C -0.120 4.120 21 N -0.614 5.614 22 C -0.227 4.227 23 H 0.070 0.930 24 C -0.065 4.065 25 N -0.949 5.949 26 Si 0.963 3.037 27 H -0.300 1.300 28 H -0.288 1.288 29 H -0.267 1.267 30 C 0.189 3.811 31 C -0.125 4.125 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.416 0.584 43 H 0.062 0.938 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.061 0.939 47 H 0.016 0.984 48 H 0.088 0.912 49 H 0.242 0.758 50 H 0.000 1.000 51 H 0.002 0.998 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.211 0.337 -22.897 23.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.108 4.108 3 C -0.148 4.148 4 C -0.149 4.149 5 C -0.094 4.094 6 C -0.167 4.167 7 C -0.078 4.078 8 C -0.131 4.131 9 C 0.289 3.711 10 O -0.460 6.460 11 N -0.366 5.366 12 C 0.050 3.950 13 H 0.060 0.940 14 C -0.138 4.138 15 C -0.127 4.127 16 H 0.127 0.873 17 C -0.147 4.147 18 C 0.032 3.968 19 H 0.079 0.921 20 C -0.161 4.161 21 N -0.338 5.338 22 C -0.356 4.356 23 H 0.088 0.912 24 C -0.258 4.258 25 N -0.599 5.599 26 Si 0.792 3.208 27 H -0.228 1.228 28 H -0.214 1.214 29 H -0.191 1.191 30 C 0.064 3.936 31 C -0.143 4.143 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.253 0.747 43 H 0.081 0.919 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.080 0.920 47 H 0.035 0.965 48 H 0.107 0.893 49 H 0.052 0.948 50 H 0.018 0.982 51 H 0.020 0.980 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.823 0.902 -22.086 22.284 hybrid contribution -0.867 0.903 1.191 1.727 sum 1.956 1.804 -20.896 21.064 Atomic orbital electron populations 1.20793 0.89677 1.02992 1.03176 1.20205 0.97423 0.93111 1.00058 1.21283 0.94387 0.98203 1.00976 1.21262 0.94671 0.97956 1.00999 1.20010 0.96973 0.92941 0.99459 1.20801 0.90386 1.02439 1.03109 1.19409 0.93691 0.94216 1.00514 1.20731 1.03417 0.96223 0.92725 1.21225 0.77120 0.80875 0.91859 1.90819 1.54661 1.52272 1.48270 1.45990 1.57268 1.23928 1.09379 1.20758 0.96818 0.95448 0.82010 0.94001 1.21898 1.02263 0.92422 0.97198 1.22796 0.95810 0.99496 0.94605 0.87279 1.22921 0.95793 0.93464 1.02499 1.21892 0.88883 0.96613 0.89389 0.92143 1.22408 0.97222 0.97998 0.98503 1.44836 1.25482 1.14501 1.49026 1.19298 1.05462 0.94745 1.16125 0.91228 1.25445 0.98115 0.99801 1.02419 1.70160 1.16799 1.27905 1.45007 0.85295 0.78126 0.79055 0.78296 1.22813 1.21427 1.19143 1.21035 0.92809 0.85053 0.94654 1.21115 0.93744 0.98359 1.01067 0.89521 0.91927 0.91004 0.84372 0.84615 0.88555 0.91732 0.92900 0.85103 0.85522 0.74716 0.91899 0.87522 0.87310 0.92026 0.96546 0.89336 0.94828 0.98183 0.97974 0.85648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 10.01 71.24 0.71 -1.43 16 2 C -0.11 -2.77 5.88 -19.86 -0.12 -2.88 16 3 C -0.13 -3.23 9.70 22.27 0.22 -3.02 16 4 C -0.13 -3.35 9.70 22.27 0.22 -3.13 16 5 C -0.09 -2.53 5.88 -19.87 -0.12 -2.65 16 6 C -0.11 -2.50 9.22 71.24 0.66 -1.84 16 7 C -0.08 -2.13 4.37 -19.87 -0.09 -2.22 16 8 C -0.09 -2.01 5.15 29.10 0.15 -1.86 16 9 C 0.50 16.42 7.01 87.66 0.61 17.03 16 10 O -0.58 -27.57 15.69 -3.02 -0.05 -27.61 16 11 N -0.71 -19.69 5.06 -442.51 -2.24 -21.93 16 12 C 0.15 5.58 2.08 45.00 0.09 5.67 16 13 H 0.04 2.18 5.40 -2.39 -0.01 2.17 16 14 C -0.10 -2.82 4.96 30.93 0.15 -2.67 16 15 C -0.11 -3.63 4.32 -9.06 -0.04 -3.66 16 16 H 0.11 3.14 8.14 -2.38 -0.02 3.12 16 17 C -0.11 -3.34 6.18 32.17 0.20 -3.14 16 18 C 0.14 5.61 4.30 45.79 0.20 5.81 16 19 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 20 C -0.12 -4.38 5.28 30.89 0.16 -4.22 16 21 N -0.61 -32.55 2.42 -664.48 -1.61 -34.16 16 22 C -0.23 -13.74 10.29 84.03 0.87 -12.87 16 23 H 0.07 4.16 7.83 -2.91 -0.02 4.13 16 24 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 25 N -0.95 -61.12 10.35 21.65 0.22 -60.89 16 26 Si 0.96 50.61 29.55 68.60 2.03 52.63 16 27 H -0.30 -16.18 7.11 99.48 0.71 -15.47 16 28 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 29 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 30 C 0.19 9.52 4.10 86.85 0.36 9.88 16 31 C -0.12 -3.42 9.34 22.27 0.21 -3.21 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 1.25 8.09 -2.39 -0.02 1.23 16 34 H 0.07 1.28 8.09 -2.38 -0.02 1.26 16 35 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 36 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 37 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 1.45 8.08 -2.39 -0.02 1.43 16 39 H 0.05 1.33 6.16 -2.38 -0.01 1.31 16 40 H 0.13 2.01 6.99 -2.39 -0.02 1.99 16 41 H 0.13 2.01 8.05 -2.39 -0.02 1.99 16 42 H 0.42 7.09 8.60 -92.71 -0.80 6.29 16 43 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.11 2.00 7.97 -2.39 -0.02 1.98 16 45 H 0.11 2.36 7.75 -2.39 -0.02 2.35 16 46 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 48 H 0.09 2.41 8.00 -2.39 -0.02 2.39 16 49 H 0.24 15.28 8.31 -92.71 -0.77 14.51 16 50 H 0.00 0.00 7.42 -2.39 -0.02 -0.02 16 51 H 0.00 0.12 6.16 -2.39 -0.01 0.11 16 52 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -87.01 401.72 3.38 -83.63 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.11 Total: 22.30 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 4.91 Total: -13.97 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -3.62 Total: -116.98 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.05 Total: -27.61 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 2.03 Total: 52.63 kcal Total: -87.01 3.38 -83.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047138762.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.800 kcal (2) G-P(sol) polarization free energy of solvation -87.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds