Wall clock time and date at job start Wed Apr 1 2020 02:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38234 * 120.00085 * 2 1 4 4 C 1.38244 * 119.99758 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99426 * 180.02562 * 4 3 2 6 6 C 1.38232 * 119.99922 * 0.02562 * 4 3 2 7 7 C 1.38231 * 120.00224 * 359.95557 * 6 4 3 8 8 C 1.50703 * 119.99816 * 179.97438 * 7 6 4 9 9 C 1.50710 * 109.46738 * 90.00071 * 8 7 6 10 10 O 1.21280 * 120.00080 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99696 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99841 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.18142 * 35.43893 * 12 11 9 14 14 C 1.53028 * 109.32429 * 154.99866 * 12 11 9 15 15 C 1.53970 * 108.82909 * 175.67808 * 14 12 11 16 16 H 1.08997 * 113.00020 * 168.09535 * 15 14 12 17 17 C 1.55435 * 106.41218 * 293.82240 * 15 14 12 18 18 C 1.55448 * 100.23519 * 73.19197 * 17 15 14 19 19 H 1.09002 * 113.04768 * 163.20849 * 18 17 15 20 20 C 1.52985 * 109.32464 * 275.88682 * 12 11 9 21 21 N 1.47796 * 104.11502 * 40.86863 * 18 17 15 22 22 C 1.36938 * 125.85317 * 153.44348 * 21 18 17 23 23 H 1.07999 * 120.00325 * 359.71224 * 22 21 18 24 24 C 1.38815 * 119.99817 * 179.71870 * 22 21 18 25 25 N 1.31621 * 119.99673 * 359.71804 * 24 22 21 26 26 Si 1.86795 * 120.00115 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47163 * 59.99668 * 26 24 22 28 28 H 1.48505 * 109.47234 * 179.97438 * 26 24 22 29 29 H 1.48492 * 109.47124 * 299.99692 * 26 24 22 30 30 C 1.47080 * 108.28865 * 333.17780 * 21 18 17 31 31 C 1.38231 * 120.00041 * 0.27246 * 7 6 4 32 32 H 1.09005 * 109.47110 * 89.99637 * 1 2 3 33 33 H 1.09000 * 109.47275 * 209.99910 * 1 2 3 34 34 H 1.08996 * 109.46941 * 330.00079 * 1 2 3 35 35 H 1.07997 * 120.00087 * 0.02562 * 3 2 1 36 36 H 1.09007 * 109.46952 * 270.01831 * 5 4 3 37 37 H 1.08998 * 109.47492 * 30.02564 * 5 4 3 38 38 H 1.09004 * 109.46633 * 150.02744 * 5 4 3 39 39 H 1.08006 * 119.99267 * 179.97438 * 6 4 3 40 40 H 1.08995 * 109.47133 * 330.00151 * 8 7 6 41 41 H 1.08996 * 109.46946 * 209.99761 * 8 7 6 42 42 H 0.97005 * 119.99695 * 359.97438 * 11 9 8 43 43 H 1.08992 * 109.57809 * 55.87314 * 14 12 11 44 44 H 1.09000 * 109.57938 * 295.47612 * 14 12 11 45 45 H 1.08996 * 111.23375 * 191.15006 * 17 15 14 46 46 H 1.09001 * 111.23537 * 315.59535 * 17 15 14 47 47 H 1.09000 * 109.52980 * 304.53080 * 20 12 11 48 48 H 1.09004 * 109.53694 * 64.67805 * 20 12 11 49 49 H 0.97000 * 120.00043 * 180.02562 * 25 24 22 50 50 H 1.08997 * 109.97388 * 120.71934 * 30 21 18 51 51 H 1.08997 * 109.97806 * 242.00645 * 30 21 18 52 52 H 1.08004 * 119.99856 * 179.72353 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3340 2.5022 0.0011 6 6 4.2717 -0.0001 0.0005 7 6 3.5805 -1.1972 0.0009 8 6 4.3340 -2.5023 0.0003 9 6 4.5860 -2.9374 1.4211 10 8 4.1922 -2.2551 2.3432 11 7 5.2492 -4.0847 1.6669 12 6 5.4938 -4.5079 3.0479 13 1 4.6410 -4.2256 3.6653 14 6 5.6673 -6.0278 3.0886 15 6 6.0310 -6.4482 4.5244 16 1 5.9693 -7.5250 4.6815 17 6 7.4354 -5.8489 4.8151 18 6 7.0669 -4.3474 4.9767 19 1 7.8471 -3.7671 5.4694 20 6 6.7517 -3.8147 3.5746 21 7 5.8059 -4.3667 5.7474 22 6 5.3503 -3.3672 6.5652 23 1 5.9325 -2.4666 6.6932 24 6 4.1402 -3.5117 7.2297 25 7 3.4281 -4.6069 7.0694 26 14 3.5190 -2.1487 8.3458 27 1 3.3486 -0.9020 7.5570 28 1 2.2135 -2.5453 8.9320 29 1 4.5007 -1.9149 9.4351 30 6 5.1213 -5.6407 5.4804 31 6 2.1982 -1.1972 -0.0044 32 1 -0.3633 0.0001 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5138 35 1 1.6582 2.1324 0.0004 36 1 4.5158 2.8172 -1.0265 37 1 3.7450 3.2616 0.5153 38 1 5.2865 2.3716 0.5149 39 1 5.3517 -0.0001 0.0005 40 1 5.2860 -2.3720 -0.5141 41 1 3.7445 -3.2619 -0.5131 42 1 5.5639 -4.6306 0.9293 43 1 6.4663 -6.3225 2.4083 44 1 4.7359 -6.5099 2.7918 45 1 7.8564 -6.2571 5.7339 46 1 8.1109 -5.9993 3.9729 47 1 7.5885 -4.0224 2.9078 48 1 6.5822 -2.7390 3.6224 49 1 2.5822 -4.7078 7.5335 50 1 4.9794 -6.1894 6.4115 51 1 4.1573 -5.4535 5.0075 52 1 1.6582 -2.1325 -0.0086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047139274.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:02 Heat of formation + Delta-G solvation = 3.559851 kcal Electronic energy + Delta-G solvation = -30701.176768 eV Core-core repulsion = 26858.366317 eV Total energy + Delta-G solvation = -3842.810451 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.18656 -39.54484 -38.32993 -34.46519 -33.50251 -33.42531 -32.73957 -30.65502 -29.88924 -28.64528 -27.76754 -26.82320 -26.67798 -25.25590 -23.07365 -22.22604 -20.77033 -20.72214 -19.84561 -19.36035 -18.54554 -17.00174 -16.62754 -16.29576 -15.91506 -15.77964 -14.66796 -14.58676 -14.33361 -14.25259 -14.02044 -13.65416 -13.41475 -13.26739 -13.02330 -12.93677 -12.76461 -12.69593 -12.57575 -12.39095 -11.96097 -11.79166 -11.75173 -11.59580 -11.49498 -11.43592 -11.18299 -10.98848 -10.95051 -10.67689 -10.61709 -10.47741 -9.94799 -9.81454 -9.68814 -9.61427 -9.35921 -9.25059 -8.51906 -8.50172 -8.47559 -8.45892 -6.72558 -5.58999 -2.90939 1.40244 1.45104 3.06039 3.47448 3.50736 3.54915 3.57258 3.90231 4.61867 4.63337 4.75324 4.79510 5.13032 5.15056 5.23228 5.26063 5.28700 5.29214 5.32677 5.47404 5.49404 5.49613 5.56143 5.59029 5.60779 5.64180 5.68393 5.81188 5.83254 5.92820 5.94019 6.08598 6.12276 6.15590 6.17003 6.18462 6.22145 6.27031 6.58207 6.58724 6.60830 6.66400 6.68718 6.75043 6.93536 6.95816 7.03992 7.09023 7.15581 7.66238 7.67688 7.91303 7.94706 8.36405 8.69849 9.34057 9.94479 10.60319 11.53053 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009877 B = 0.003524 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.288233 B = 7943.209783 C = 9350.030375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.083 4.083 3 C -0.124 4.124 4 C -0.083 4.083 5 C -0.112 4.112 6 C -0.110 4.110 7 C -0.053 4.053 8 C -0.103 4.103 9 C 0.504 3.496 10 O -0.512 6.512 11 N -0.731 5.731 12 C 0.147 3.853 13 H 0.113 0.887 14 C -0.111 4.111 15 C -0.119 4.119 16 H 0.081 0.919 17 C -0.127 4.127 18 C 0.157 3.843 19 H 0.064 0.936 20 C -0.135 4.135 21 N -0.595 5.595 22 C -0.220 4.220 23 H 0.075 0.925 24 C -0.006 4.006 25 N -0.924 5.924 26 Si 0.907 3.093 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.286 1.286 30 C 0.181 3.819 31 C -0.110 4.110 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.118 0.882 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.117 0.883 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.389 0.611 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.042 0.958 48 H 0.058 0.942 49 H 0.251 0.749 50 H 0.044 0.956 51 H 0.046 0.954 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.247 3.210 -19.506 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.142 4.142 4 C -0.083 4.083 5 C -0.169 4.169 6 C -0.129 4.129 7 C -0.053 4.053 8 C -0.143 4.143 9 C 0.289 3.711 10 O -0.386 6.386 11 N -0.382 5.382 12 C 0.044 3.956 13 H 0.131 0.869 14 C -0.149 4.149 15 C -0.139 4.139 16 H 0.100 0.900 17 C -0.165 4.165 18 C 0.048 3.952 19 H 0.082 0.918 20 C -0.176 4.176 21 N -0.319 5.319 22 C -0.349 4.349 23 H 0.093 0.907 24 C -0.201 4.201 25 N -0.572 5.572 26 Si 0.738 3.262 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.213 1.213 30 C 0.056 3.944 31 C -0.128 4.128 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.136 0.864 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.135 0.865 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.222 0.778 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.077 0.923 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.064 0.936 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.718 3.774 -18.653 19.108 hybrid contribution -0.221 0.393 0.208 0.496 sum 1.497 4.167 -18.445 18.969 Atomic orbital electron populations 1.20774 0.91331 1.02938 1.01928 1.19814 0.95911 0.93042 0.99487 1.20845 0.93511 0.97373 1.02501 1.19807 0.93798 0.95130 0.99614 1.20769 1.00064 0.94162 1.01916 1.20793 0.99387 0.91481 1.01189 1.19222 0.93476 0.93581 0.99058 1.20702 1.01791 0.96099 0.95693 1.20414 0.78452 0.81468 0.90787 1.90838 1.49226 1.52768 1.45763 1.46242 1.58549 1.24019 1.09418 1.21175 1.00753 0.92909 0.80781 0.86878 1.21954 1.00457 0.94880 0.97611 1.22842 0.96985 0.99109 0.94980 0.90040 1.23010 0.95985 0.97373 1.00157 1.21440 0.90097 0.93397 0.90241 0.91850 1.22493 0.95914 1.00725 0.98448 1.44594 1.18741 1.16834 1.51743 1.18961 1.02397 0.95459 1.18040 0.90724 1.24708 0.97257 0.97535 1.00643 1.69929 1.14672 1.26126 1.46455 0.86256 0.77880 0.81615 0.80433 1.21171 1.21712 1.21328 1.21299 0.92593 0.85242 0.95247 1.20817 0.93390 0.97563 1.01047 0.91417 0.91449 0.91640 0.86427 0.91434 0.91648 0.91519 0.86456 0.88419 0.88387 0.77849 0.92868 0.92253 0.91872 0.92308 0.93921 0.92342 0.93922 0.93815 0.93641 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.01 36.00 0.36 -0.80 16 2 C -0.08 -1.07 5.88 -104.62 -0.62 -1.69 16 3 C -0.12 -1.57 9.36 -39.58 -0.37 -1.94 16 4 C -0.08 -1.07 5.88 -104.62 -0.62 -1.68 16 5 C -0.11 -1.11 10.01 36.01 0.36 -0.75 16 6 C -0.11 -1.50 9.36 -39.59 -0.37 -1.87 16 7 C -0.05 -0.73 4.37 -104.63 -0.46 -1.19 16 8 C -0.10 -1.22 5.83 -29.03 -0.17 -1.39 16 9 C 0.50 8.40 7.77 -10.98 -0.09 8.32 16 10 O -0.51 -11.65 15.70 5.56 0.09 -11.56 16 11 N -0.73 -10.92 5.07 -53.80 -0.27 -11.20 16 12 C 0.15 2.73 2.07 -67.93 -0.14 2.59 16 13 H 0.11 2.80 5.40 -51.93 -0.28 2.52 16 14 C -0.11 -1.77 4.95 -26.21 -0.13 -1.90 16 15 C -0.12 -2.16 4.33 -87.92 -0.38 -2.54 16 16 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 17 C -0.13 -2.19 6.20 -24.14 -0.15 -2.34 16 18 C 0.16 3.25 4.26 -65.78 -0.28 2.97 16 19 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 20 C -0.13 -2.57 5.26 -26.60 -0.14 -2.71 16 21 N -0.59 -15.21 2.44 -161.56 -0.39 -15.60 16 22 C -0.22 -6.36 10.29 -15.06 -0.16 -6.51 16 23 H 0.07 2.12 7.83 -52.49 -0.41 1.71 16 24 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 25 N -0.92 -27.98 10.35 55.49 0.57 -27.40 16 26 Si 0.91 23.51 29.55 -169.99 -5.02 18.49 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 28 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 30 C 0.18 4.37 4.10 -2.82 -0.01 4.36 16 31 C -0.11 -1.52 9.36 -39.58 -0.37 -1.89 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 34 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 38 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 39 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 40 H 0.10 0.89 8.09 -51.93 -0.42 0.47 16 41 H 0.10 0.91 8.08 -51.93 -0.42 0.49 16 42 H 0.39 4.22 8.60 -40.82 -0.35 3.87 16 43 H 0.05 0.70 7.97 -51.93 -0.41 0.29 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.06 0.86 7.75 -51.93 -0.40 0.45 16 47 H 0.04 0.69 8.00 -51.93 -0.42 0.27 16 48 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 49 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 50 H 0.04 1.18 7.40 -51.93 -0.38 0.80 16 51 H 0.05 1.23 6.15 -51.93 -0.32 0.92 16 52 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 406.30 15.07 6.12 6.12 Total: -1.00 -35.11 406.30 -11.58 -46.70 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -8.86 Total: 5.69 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -3.82 Total: -11.23 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.09 Total: -54.20 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -5.02 Total: 18.49 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.11 -11.58 -46.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047139274.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.255 kcal (2) G-P(sol) polarization free energy of solvation -35.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds