Wall clock time and date at job start Wed Apr 1 2020 02:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38234 * 120.00085 * 2 1 4 4 C 1.38244 * 119.99758 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99426 * 180.02562 * 4 3 2 6 6 C 1.38232 * 119.99922 * 0.02562 * 4 3 2 7 7 C 1.38231 * 120.00224 * 359.95557 * 6 4 3 8 8 C 1.50703 * 119.99816 * 179.97438 * 7 6 4 9 9 C 1.50710 * 109.46738 * 90.00071 * 8 7 6 10 10 O 1.21280 * 120.00080 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99696 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99841 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.18142 * 35.43893 * 12 11 9 14 14 C 1.53028 * 109.32429 * 154.99866 * 12 11 9 15 15 C 1.53970 * 108.82909 * 175.67808 * 14 12 11 16 16 H 1.08997 * 113.00020 * 168.09535 * 15 14 12 17 17 C 1.55435 * 106.41218 * 293.82240 * 15 14 12 18 18 C 1.55448 * 100.23519 * 73.19197 * 17 15 14 19 19 H 1.09002 * 113.04768 * 163.20849 * 18 17 15 20 20 C 1.52985 * 109.32464 * 275.88682 * 12 11 9 21 21 N 1.47796 * 104.11502 * 40.86863 * 18 17 15 22 22 C 1.36938 * 125.85317 * 153.44348 * 21 18 17 23 23 H 1.07999 * 120.00325 * 359.71224 * 22 21 18 24 24 C 1.38815 * 119.99817 * 179.71870 * 22 21 18 25 25 N 1.31621 * 119.99673 * 359.71804 * 24 22 21 26 26 Si 1.86795 * 120.00115 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47163 * 59.99668 * 26 24 22 28 28 H 1.48505 * 109.47234 * 179.97438 * 26 24 22 29 29 H 1.48492 * 109.47124 * 299.99692 * 26 24 22 30 30 C 1.47080 * 108.28865 * 333.17780 * 21 18 17 31 31 C 1.38231 * 120.00041 * 0.27246 * 7 6 4 32 32 H 1.09005 * 109.47110 * 89.99637 * 1 2 3 33 33 H 1.09000 * 109.47275 * 209.99910 * 1 2 3 34 34 H 1.08996 * 109.46941 * 330.00079 * 1 2 3 35 35 H 1.07997 * 120.00087 * 0.02562 * 3 2 1 36 36 H 1.09007 * 109.46952 * 270.01831 * 5 4 3 37 37 H 1.08998 * 109.47492 * 30.02564 * 5 4 3 38 38 H 1.09004 * 109.46633 * 150.02744 * 5 4 3 39 39 H 1.08006 * 119.99267 * 179.97438 * 6 4 3 40 40 H 1.08995 * 109.47133 * 330.00151 * 8 7 6 41 41 H 1.08996 * 109.46946 * 209.99761 * 8 7 6 42 42 H 0.97005 * 119.99695 * 359.97438 * 11 9 8 43 43 H 1.08992 * 109.57809 * 55.87314 * 14 12 11 44 44 H 1.09000 * 109.57938 * 295.47612 * 14 12 11 45 45 H 1.08996 * 111.23375 * 191.15006 * 17 15 14 46 46 H 1.09001 * 111.23537 * 315.59535 * 17 15 14 47 47 H 1.09000 * 109.52980 * 304.53080 * 20 12 11 48 48 H 1.09004 * 109.53694 * 64.67805 * 20 12 11 49 49 H 0.97000 * 120.00043 * 180.02562 * 25 24 22 50 50 H 1.08997 * 109.97388 * 120.71934 * 30 21 18 51 51 H 1.08997 * 109.97806 * 242.00645 * 30 21 18 52 52 H 1.08004 * 119.99856 * 179.72353 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3340 2.5022 0.0011 6 6 4.2717 -0.0001 0.0005 7 6 3.5805 -1.1972 0.0009 8 6 4.3340 -2.5023 0.0003 9 6 4.5860 -2.9374 1.4211 10 8 4.1922 -2.2551 2.3432 11 7 5.2492 -4.0847 1.6669 12 6 5.4938 -4.5079 3.0479 13 1 4.6410 -4.2256 3.6653 14 6 5.6673 -6.0278 3.0886 15 6 6.0310 -6.4482 4.5244 16 1 5.9693 -7.5250 4.6815 17 6 7.4354 -5.8489 4.8151 18 6 7.0669 -4.3474 4.9767 19 1 7.8471 -3.7671 5.4694 20 6 6.7517 -3.8147 3.5746 21 7 5.8059 -4.3667 5.7474 22 6 5.3503 -3.3672 6.5652 23 1 5.9325 -2.4666 6.6932 24 6 4.1402 -3.5117 7.2297 25 7 3.4281 -4.6069 7.0694 26 14 3.5190 -2.1487 8.3458 27 1 3.3486 -0.9020 7.5570 28 1 2.2135 -2.5453 8.9320 29 1 4.5007 -1.9149 9.4351 30 6 5.1213 -5.6407 5.4804 31 6 2.1982 -1.1972 -0.0044 32 1 -0.3633 0.0001 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5138 35 1 1.6582 2.1324 0.0004 36 1 4.5158 2.8172 -1.0265 37 1 3.7450 3.2616 0.5153 38 1 5.2865 2.3716 0.5149 39 1 5.3517 -0.0001 0.0005 40 1 5.2860 -2.3720 -0.5141 41 1 3.7445 -3.2619 -0.5131 42 1 5.5639 -4.6306 0.9293 43 1 6.4663 -6.3225 2.4083 44 1 4.7359 -6.5099 2.7918 45 1 7.8564 -6.2571 5.7339 46 1 8.1109 -5.9993 3.9729 47 1 7.5885 -4.0224 2.9078 48 1 6.5822 -2.7390 3.6224 49 1 2.5822 -4.7078 7.5335 50 1 4.9794 -6.1894 6.4115 51 1 4.1573 -5.4535 5.0075 52 1 1.6582 -2.1325 -0.0086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047139274.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:01 Heat of formation + Delta-G solvation = -17.673183 kcal Electronic energy + Delta-G solvation = -30702.097502 eV Core-core repulsion = 26858.366317 eV Total energy + Delta-G solvation = -3843.731184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.58747 -40.73051 -39.67539 -36.06439 -34.69053 -34.43417 -34.39810 -32.37525 -31.46678 -30.20314 -28.84623 -27.80455 -27.58477 -27.20279 -24.92747 -23.52787 -22.00945 -21.65237 -21.30294 -20.99121 -20.03824 -18.93925 -17.96685 -17.45585 -17.17612 -16.89325 -16.56732 -16.12534 -15.76836 -15.51269 -15.29697 -15.00226 -14.81240 -14.37147 -14.15305 -14.02843 -13.88742 -13.85801 -13.79095 -13.46294 -13.44778 -13.39188 -13.25919 -13.10305 -13.00097 -12.63350 -12.56474 -12.53468 -12.36327 -12.16125 -11.92502 -11.90136 -11.87299 -11.64387 -11.37409 -11.15528 -10.98411 -10.71979 -10.67788 -9.91166 -9.51712 -9.43583 -8.82988 -7.84177 -5.15319 0.40417 0.46446 1.35714 1.41429 1.45509 1.77518 2.29268 2.47442 2.86244 3.34267 3.65305 3.66161 3.83002 3.85092 3.90335 3.92439 4.05698 4.19554 4.20973 4.36037 4.39657 4.41921 4.45694 4.50219 4.55447 4.59417 4.62835 4.66947 4.68010 4.71055 4.77397 4.81472 4.81548 4.84631 4.97164 5.02945 5.10734 5.20569 5.25986 5.31824 5.33665 5.35519 5.47565 5.48712 5.51415 5.60447 5.62430 5.69277 5.70689 5.77715 5.85100 6.14710 6.23027 6.74106 7.13892 7.48645 7.82806 8.46496 9.25685 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009877 B = 0.003524 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.288233 B = 7943.209783 C = 9350.030375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.096 4.096 3 C -0.139 4.139 4 C -0.095 4.095 5 C -0.110 4.110 6 C -0.131 4.131 7 C -0.070 4.070 8 C -0.090 4.090 9 C 0.500 3.500 10 O -0.584 6.584 11 N -0.712 5.712 12 C 0.154 3.846 13 H 0.041 0.959 14 C -0.100 4.100 15 C -0.108 4.108 16 H 0.110 0.890 17 C -0.108 4.108 18 C 0.139 3.861 19 H 0.059 0.941 20 C -0.121 4.121 21 N -0.614 5.614 22 C -0.229 4.229 23 H 0.069 0.931 24 C -0.064 4.064 25 N -0.948 5.948 26 Si 0.964 3.036 27 H -0.292 1.292 28 H -0.291 1.291 29 H -0.271 1.271 30 C 0.189 3.811 31 C -0.135 4.135 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.126 0.874 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.416 0.584 43 H 0.106 0.894 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.108 0.892 47 H 0.088 0.912 48 H 0.015 0.985 49 H 0.243 0.757 50 H 0.001 0.999 51 H 0.002 0.998 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.405 2.297 -22.468 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 C -0.157 4.157 4 C -0.095 4.095 5 C -0.167 4.167 6 C -0.150 4.150 7 C -0.070 4.070 8 C -0.129 4.129 9 C 0.287 3.713 10 O -0.463 6.463 11 N -0.365 5.365 12 C 0.049 3.951 13 H 0.060 0.940 14 C -0.137 4.137 15 C -0.127 4.127 16 H 0.128 0.872 17 C -0.146 4.146 18 C 0.032 3.968 19 H 0.078 0.922 20 C -0.162 4.162 21 N -0.339 5.339 22 C -0.359 4.359 23 H 0.087 0.913 24 C -0.257 4.257 25 N -0.598 5.598 26 Si 0.793 3.207 27 H -0.220 1.220 28 H -0.216 1.216 29 H -0.197 1.197 30 C 0.064 3.936 31 C -0.153 4.153 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.155 0.845 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.144 0.856 40 H 0.151 0.849 41 H 0.147 0.853 42 H 0.253 0.747 43 H 0.125 0.875 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.126 0.874 47 H 0.107 0.893 48 H 0.034 0.966 49 H 0.052 0.948 50 H 0.019 0.981 51 H 0.020 0.980 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.939 2.825 -21.672 22.208 hybrid contribution -0.883 0.749 1.116 1.608 sum 3.056 3.575 -20.557 21.088 Atomic orbital electron populations 1.20809 0.89694 1.03008 1.03255 1.20210 0.97393 0.93078 0.98891 1.21170 0.93842 0.98131 1.02522 1.20225 0.94289 0.96183 0.98776 1.20809 0.99651 0.92936 1.03282 1.21071 1.00066 0.91938 1.01875 1.19533 0.93801 0.94654 0.99017 1.20726 1.03877 0.95881 0.92402 1.21308 0.77010 0.80859 0.92100 1.90819 1.52099 1.55005 1.48404 1.45980 1.57819 1.23828 1.08856 1.20776 0.97650 0.95037 0.81657 0.94046 1.21895 1.02690 0.92152 0.97013 1.22807 0.95730 0.99645 0.94533 0.87193 1.22964 0.96012 0.93456 1.02206 1.21815 0.88007 0.96631 0.90334 0.92248 1.22311 0.97669 0.97937 0.98294 1.44830 1.20706 1.16555 1.51762 1.19261 1.02418 0.96221 1.17984 0.91330 1.25447 0.97825 0.99726 1.02704 1.70153 1.14584 1.27632 1.47428 0.85365 0.77554 0.78752 0.79041 1.21950 1.21642 1.19652 1.21043 0.92712 0.85275 0.94527 1.21075 0.93921 0.98212 1.02088 0.89383 0.91990 0.90917 0.84546 0.89406 0.90977 0.91686 0.85565 0.84895 0.85322 0.74660 0.87534 0.91803 0.91960 0.87357 0.89322 0.96636 0.94800 0.98088 0.97978 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.24 10.01 71.23 0.71 -1.52 16 2 C -0.10 -2.50 5.88 -19.87 -0.12 -2.62 16 3 C -0.14 -3.48 9.36 22.27 0.21 -3.27 16 4 C -0.09 -2.40 5.88 -19.86 -0.12 -2.52 16 5 C -0.11 -2.07 10.01 71.24 0.71 -1.36 16 6 C -0.13 -3.55 9.36 22.27 0.21 -3.34 16 7 C -0.07 -1.91 4.37 -19.87 -0.09 -2.00 16 8 C -0.09 -1.95 5.83 29.11 0.17 -1.78 16 9 C 0.50 16.51 7.77 87.66 0.68 17.19 16 10 O -0.58 -28.02 15.70 -3.03 -0.05 -28.07 16 11 N -0.71 -19.84 5.07 -442.50 -2.24 -22.08 16 12 C 0.15 5.60 2.07 45.00 0.09 5.69 16 13 H 0.04 2.17 5.40 -2.39 -0.01 2.15 16 14 C -0.10 -2.82 4.95 30.93 0.15 -2.67 16 15 C -0.11 -3.64 4.33 -9.04 -0.04 -3.68 16 16 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 17 C -0.11 -3.35 6.20 32.27 0.20 -3.15 16 18 C 0.14 5.67 4.26 45.67 0.19 5.86 16 19 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 20 C -0.12 -4.48 5.26 30.68 0.16 -4.32 16 21 N -0.61 -32.73 2.44 -665.04 -1.62 -34.36 16 22 C -0.23 -13.96 10.29 84.03 0.87 -13.10 16 23 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 24 C -0.06 -3.99 5.49 84.86 0.47 -3.52 16 25 N -0.95 -61.06 10.35 21.65 0.22 -60.84 16 26 Si 0.96 50.65 29.55 68.60 2.03 52.68 16 27 H -0.29 -15.56 7.11 99.48 0.71 -14.85 16 28 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16 29 H -0.27 -13.40 7.11 99.48 0.71 -12.70 16 30 C 0.19 9.54 4.10 86.85 0.36 9.90 16 31 C -0.13 -3.78 9.36 22.27 0.21 -3.57 16 32 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.06 1.29 8.09 -2.39 -0.02 1.27 16 34 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 35 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 36 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.07 1.24 8.09 -2.39 -0.02 1.22 16 38 H 0.06 1.23 8.09 -2.38 -0.02 1.21 16 39 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 40 H 0.13 1.95 8.09 -2.39 -0.02 1.93 16 41 H 0.13 2.00 8.08 -2.39 -0.02 1.98 16 42 H 0.42 7.13 8.60 -92.70 -0.80 6.34 16 43 H 0.11 2.01 7.97 -2.39 -0.02 1.99 16 44 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.11 2.38 7.75 -2.39 -0.02 2.36 16 47 H 0.09 2.46 8.00 -2.39 -0.02 2.44 16 48 H 0.01 0.68 8.14 -2.38 -0.02 0.66 16 49 H 0.24 15.32 8.31 -92.71 -0.77 14.55 16 50 H 0.00 0.05 7.40 -2.39 -0.02 0.03 16 51 H 0.00 0.12 6.15 -2.39 -0.01 0.11 16 52 H 0.12 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -87.48 406.30 3.48 -84.00 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.11 Total: 22.43 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 5.03 Total: -13.76 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -3.64 Total: -117.28 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.05 Total: -28.07 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 2.03 Total: 52.68 kcal Total: -87.48 3.48 -84.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047139274.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.329 kcal (2) G-P(sol) polarization free energy of solvation -87.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds