Wall clock time and date at job start Wed Apr 1 2020 02:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38231 * 120.00162 * 2 1 4 4 C 1.38233 * 120.00074 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00171 * 179.97438 * 4 3 2 6 6 C 1.38238 * 120.00119 * 0.02562 * 4 3 2 7 7 C 1.38228 * 119.99786 * 359.97438 * 6 4 3 8 8 C 1.50700 * 119.99979 * 179.97438 * 7 6 4 9 9 C 1.50702 * 109.47119 * 90.00107 * 8 7 6 10 10 O 1.21277 * 119.99836 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00193 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00114 * 180.02562 * 11 9 8 13 13 H 1.09008 * 109.32555 * 50.48197 * 12 11 9 14 14 C 1.53032 * 109.32578 * 291.01323 * 12 11 9 15 15 C 1.53971 * 108.82170 * 295.14035 * 14 12 11 16 16 H 1.08998 * 112.98888 * 169.00112 * 15 14 12 17 17 C 1.55425 * 106.41733 * 293.81955 * 15 14 12 18 18 C 1.55313 * 100.40209 * 73.38426 * 17 15 14 19 19 H 1.08998 * 112.59573 * 163.39280 * 18 17 15 20 20 C 1.52985 * 109.32753 * 170.12290 * 12 11 9 21 21 N 1.47795 * 104.21141 * 40.55784 * 18 17 15 22 22 C 1.36940 * 125.85466 * 153.63625 * 21 18 17 23 23 H 1.07998 * 119.99920 * 8.10012 * 22 21 18 24 24 C 1.38811 * 119.99618 * 188.09644 * 22 21 18 25 25 N 1.31616 * 120.00355 * 7.33445 * 24 22 21 26 26 Si 1.86799 * 119.99803 * 187.32944 * 24 22 21 27 27 H 1.48501 * 109.47041 * 84.99377 * 26 24 22 28 28 H 1.48499 * 109.47382 * 204.99460 * 26 24 22 29 29 H 1.48501 * 109.47119 * 324.99843 * 26 24 22 30 30 C 1.49528 * 108.53781 * 333.48840 * 21 18 17 31 31 C 1.38238 * 119.99819 * 180.27246 * 2 1 3 32 32 H 1.09007 * 109.46779 * 89.99943 * 1 2 3 33 33 H 1.09005 * 109.47498 * 209.99822 * 1 2 3 34 34 H 1.08996 * 109.47547 * 330.00592 * 1 2 3 35 35 H 1.08001 * 119.99818 * 359.97438 * 3 2 1 36 36 H 1.09009 * 109.47470 * 270.02377 * 5 4 3 37 37 H 1.08998 * 109.47206 * 30.01840 * 5 4 3 38 38 H 1.09003 * 109.47331 * 150.02340 * 5 4 3 39 39 H 1.08004 * 119.99822 * 179.97438 * 6 4 3 40 40 H 1.09002 * 109.47395 * 330.00257 * 8 7 6 41 41 H 1.09000 * 109.47546 * 210.00058 * 8 7 6 42 42 H 0.97007 * 119.99969 * 359.97438 * 11 9 8 43 43 H 1.08998 * 109.57615 * 54.94447 * 14 12 11 44 44 H 1.09003 * 109.57711 * 175.20782 * 14 12 11 45 45 H 1.09000 * 111.23668 * 191.15874 * 17 15 14 46 46 H 1.09000 * 111.23457 * 315.55575 * 17 15 14 47 47 H 1.09003 * 109.53818 * 185.07026 * 20 12 11 48 48 H 1.09004 * 109.53053 * 305.21722 * 20 12 11 49 49 H 0.96997 * 120.00059 * 180.02562 * 25 24 22 50 50 H 1.09001 * 110.81124 * 242.05491 * 30 21 18 51 51 H 1.08996 * 110.23499 * 120.04967 * 30 21 18 52 52 H 1.07997 * 120.00356 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3340 2.5021 0.0000 6 6 4.2717 -0.0001 0.0005 7 6 3.5805 -1.1972 0.0005 8 6 4.3340 -2.5023 0.0000 9 6 4.5856 -2.9377 1.4206 10 8 4.1915 -2.2556 2.3427 11 7 5.2487 -4.0850 1.6664 12 6 5.4928 -4.5085 3.0474 13 1 4.5571 -4.4757 3.6056 14 6 6.5000 -3.5577 3.6981 15 6 7.8512 -3.6929 2.9724 16 1 8.5634 -2.9160 3.2505 17 6 8.3663 -5.1294 3.2670 18 6 7.4121 -5.9598 2.3658 19 1 7.7750 -6.9730 2.1935 20 6 6.0339 -5.9394 3.0500 21 7 7.3035 -5.1659 1.1239 22 6 7.0197 -5.6597 -0.1214 23 1 6.7244 -6.6918 -0.2387 24 6 7.1116 -4.8334 -1.2331 25 7 7.6084 -3.6206 -1.1124 26 14 6.5304 -5.4430 -2.9004 27 1 5.0686 -5.2149 -3.0287 28 1 7.2427 -4.7039 -3.9735 29 1 6.8176 -6.8946 -3.0244 30 6 7.5523 -3.7291 1.4549 31 6 2.1981 -1.1972 -0.0057 32 1 -0.3633 0.0000 -1.0278 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3634 0.8900 0.5137 35 1 1.6581 2.1324 -0.0004 36 1 4.5158 2.8164 -1.0279 37 1 3.7450 3.2621 0.5133 38 1 5.2865 2.3720 0.5139 39 1 5.3517 -0.0001 0.0005 40 1 5.2862 -2.3719 -0.5142 41 1 3.7447 -3.2618 -0.5138 42 1 5.5636 -4.6308 0.9288 43 1 6.1411 -2.5320 3.6139 44 1 6.6205 -3.8173 4.7499 45 1 9.4045 -5.2479 2.9567 46 1 8.2398 -5.3862 4.3187 47 1 6.1318 -6.2903 4.0774 48 1 5.3478 -6.5895 2.5069 49 1 7.6723 -3.0431 -1.8891 50 1 6.6737 -3.1230 1.2338 51 1 8.4117 -3.3571 0.8971 52 1 1.6582 -2.1325 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047139275.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:06 Heat of formation + Delta-G solvation = 44.583024 kcal Electronic energy + Delta-G solvation = -32144.581603 eV Core-core repulsion = 28303.550051 eV Total energy + Delta-G solvation = -3841.031552 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.63005 -39.34866 -37.66471 -33.72410 -33.28952 -33.05987 -32.95303 -30.75857 -30.36271 -28.49137 -27.45920 -26.50139 -26.42846 -25.24650 -23.19938 -21.98536 -20.62807 -20.47720 -19.69403 -19.14220 -18.64275 -17.10552 -16.24156 -16.00299 -15.55979 -15.14176 -15.12904 -14.56881 -14.21290 -13.88784 -13.80990 -13.60288 -13.10868 -12.95919 -12.81246 -12.68567 -12.54032 -12.45256 -12.38211 -12.20278 -11.96450 -11.84457 -11.71057 -11.62197 -11.44466 -11.20944 -11.19397 -10.94230 -10.88574 -10.67834 -10.61898 -10.59919 -10.15794 -9.85771 -9.70388 -9.61065 -9.36305 -8.96923 -8.82341 -8.22655 -8.21085 -7.44120 -6.95152 -5.88918 -3.30625 1.69432 1.70769 3.26128 3.33920 3.35858 3.54027 3.93146 4.30068 4.38936 4.96691 5.02541 5.09726 5.18165 5.22083 5.31154 5.39965 5.46902 5.48413 5.53717 5.62808 5.64170 5.72885 5.76480 5.81997 5.83627 5.87673 5.89915 5.94072 5.95727 6.00989 6.04287 6.13525 6.18391 6.27899 6.29725 6.31614 6.46407 6.50109 6.53712 6.62924 6.73560 6.82721 6.85198 6.86172 6.90461 6.94985 7.04592 7.36870 7.46508 7.56081 7.58925 7.76888 8.05744 8.72997 8.98731 9.32282 9.58303 10.28004 11.15355 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010854 B = 0.004383 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.022026 B = 6387.096946 C = 7446.863085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.088 4.088 3 C -0.131 4.131 4 C -0.086 4.086 5 C -0.111 4.111 6 C -0.107 4.107 7 C -0.038 4.038 8 C -0.110 4.110 9 C 0.510 3.490 10 O -0.569 6.569 11 N -0.696 5.696 12 C 0.163 3.837 13 H 0.057 0.943 14 C -0.124 4.124 15 C -0.120 4.120 16 H 0.073 0.927 17 C -0.127 4.127 18 C 0.152 3.848 19 H 0.066 0.934 20 C -0.141 4.141 21 N -0.597 5.597 22 C -0.253 4.253 23 H 0.080 0.920 24 C 0.003 3.997 25 N -0.903 5.903 26 Si 0.900 3.100 27 H -0.284 1.284 28 H -0.289 1.289 29 H -0.280 1.280 30 C 0.149 3.851 31 C -0.115 4.115 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.114 0.886 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.090 0.910 42 H 0.436 0.564 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.256 0.744 50 H 0.069 0.931 51 H 0.056 0.944 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.797 4.536 3.891 9.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.088 4.088 3 C -0.149 4.149 4 C -0.086 4.086 5 C -0.168 4.168 6 C -0.125 4.125 7 C -0.038 4.038 8 C -0.150 4.150 9 C 0.296 3.704 10 O -0.450 6.450 11 N -0.363 5.363 12 C 0.057 3.943 13 H 0.075 0.925 14 C -0.162 4.162 15 C -0.139 4.139 16 H 0.091 0.909 17 C -0.165 4.165 18 C 0.045 3.955 19 H 0.084 0.916 20 C -0.181 4.181 21 N -0.324 5.324 22 C -0.381 4.381 23 H 0.098 0.902 24 C -0.196 4.196 25 N -0.548 5.548 26 Si 0.729 3.271 27 H -0.211 1.211 28 H -0.215 1.215 29 H -0.206 1.206 30 C 0.026 3.974 31 C -0.133 4.133 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.132 0.868 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.108 0.892 42 H 0.291 0.709 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.086 0.914 51 H 0.074 0.926 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.034 5.028 4.232 9.626 hybrid contribution 0.036 -0.654 -1.205 1.372 sum -6.999 4.374 3.026 8.790 Atomic orbital electron populations 1.20736 0.91666 1.02406 1.01825 1.19750 0.95583 0.93127 1.00357 1.20740 0.93467 0.97068 1.03591 1.19795 0.93720 0.95079 0.99974 1.20751 0.99960 0.94099 1.01943 1.20903 0.99830 0.91335 1.00471 1.19403 0.93276 0.94164 0.96996 1.20749 1.03110 0.94832 0.96260 1.20276 0.77778 0.81901 0.90418 1.90598 1.53156 1.55088 1.46149 1.47625 1.54333 1.23922 1.10376 1.20542 0.96633 0.93450 0.83671 0.92483 1.22076 0.95653 1.00605 0.97862 1.22798 0.95554 0.96144 0.99417 0.90893 1.22983 0.99017 0.96342 0.98161 1.21585 0.91928 0.94897 0.87120 0.91587 1.22527 1.00120 0.95298 1.00154 1.45558 1.81730 1.02692 1.02431 1.19121 1.40028 0.96453 0.82472 0.90196 1.24854 1.00595 0.96735 0.97417 1.69986 1.47926 1.07754 1.29112 0.86329 0.78493 0.78223 0.84014 1.21120 1.21460 1.20569 1.22481 1.01581 0.85408 0.87968 1.20815 0.93567 0.97272 1.01648 0.91584 0.91768 0.91922 0.86779 0.91489 0.91967 0.91533 0.86111 0.86329 0.89162 0.70878 0.91197 0.92689 0.92163 0.92252 0.91941 0.92135 0.93357 0.91368 0.92588 0.86693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 36.00 0.36 -0.87 16 2 C -0.09 -1.30 5.88 -104.63 -0.62 -1.91 16 3 C -0.13 -1.87 9.36 -39.59 -0.37 -2.24 16 4 C -0.09 -1.30 5.88 -104.62 -0.62 -1.92 16 5 C -0.11 -1.33 10.01 36.01 0.36 -0.97 16 6 C -0.11 -1.88 9.36 -39.59 -0.37 -2.25 16 7 C -0.04 -0.69 4.37 -104.63 -0.46 -1.15 16 8 C -0.11 -2.13 5.80 -29.03 -0.17 -2.30 16 9 C 0.51 10.70 6.00 -10.99 -0.07 10.63 16 10 O -0.57 -13.04 14.72 5.56 0.08 -12.96 16 11 N -0.70 -14.24 2.78 -53.80 -0.15 -14.39 16 12 C 0.16 3.02 2.73 -67.92 -0.19 2.84 16 13 H 0.06 1.07 8.05 -51.92 -0.42 0.65 16 14 C -0.12 -2.24 5.13 -26.21 -0.13 -2.37 16 15 C -0.12 -2.25 4.27 -87.93 -0.38 -2.63 16 16 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 17 C -0.13 -2.17 6.19 -24.22 -0.15 -2.32 16 18 C 0.15 2.84 4.31 -65.53 -0.28 2.56 16 19 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 20 C -0.14 -2.37 5.41 -26.28 -0.14 -2.51 16 21 N -0.60 -13.20 1.80 -159.28 -0.29 -13.49 16 22 C -0.25 -6.06 8.46 -15.06 -0.13 -6.19 16 23 H 0.08 1.89 7.84 -52.49 -0.41 1.48 16 24 C 0.00 0.07 5.40 -17.43 -0.09 -0.02 16 25 N -0.90 -22.92 10.34 55.49 0.57 -22.35 16 26 Si 0.90 19.79 29.56 -169.99 -5.02 14.76 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 29 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 30 C 0.15 3.32 4.07 -1.46 -0.01 3.31 16 31 C -0.11 -1.91 9.36 -39.58 -0.37 -2.28 16 32 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 34 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 35 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 38 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 39 H 0.12 2.11 8.06 -52.48 -0.42 1.69 16 40 H 0.12 2.49 7.79 -51.93 -0.40 2.08 16 41 H 0.09 1.65 8.08 -51.93 -0.42 1.23 16 42 H 0.44 9.49 3.94 -40.82 -0.16 9.33 16 43 H 0.07 1.41 6.75 -51.93 -0.35 1.06 16 44 H 0.05 0.87 7.98 -51.93 -0.41 0.46 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.06 0.88 7.75 -51.93 -0.40 0.47 16 47 H 0.06 0.90 8.00 -51.93 -0.42 0.48 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.26 6.44 8.31 -40.82 -0.34 6.11 16 50 H 0.07 1.60 3.85 -54.72 -0.21 1.38 16 51 H 0.06 1.44 6.84 -51.93 -0.35 1.08 16 52 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 393.06 15.07 5.92 5.92 Total: -1.00 -27.27 393.06 -11.27 -38.55 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: -8.58 Total: 16.54 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -3.81 Total: -12.59 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.14 Total: -50.23 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.08 Total: -12.96 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -27.27 -11.27 -38.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047139275.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.130 kcal (2) G-P(sol) polarization free energy of solvation -27.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds