Wall clock time and date at job start Wed Apr 1 2020 03:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47443 * 2 1 4 4 C 1.38238 * 119.99775 * 89.99737 * 3 2 1 5 5 C 1.38236 * 120.00053 * 179.97438 * 4 3 2 6 6 C 1.38233 * 119.99695 * 0.02818 * 5 4 3 7 7 C 1.50699 * 119.99973 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.46927 * 89.99905 * 7 6 5 9 9 O 1.21279 * 120.00431 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99751 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00074 * 180.02562 * 10 8 7 12 12 H 1.09007 * 109.17912 * 49.83342 * 11 10 8 13 13 C 1.53150 * 107.77219 * 290.95930 * 11 10 8 14 14 C 1.53967 * 108.33255 * 293.58515 * 13 11 10 15 15 H 1.08999 * 112.99729 * 169.64150 * 14 13 11 16 16 C 1.57170 * 107.04451 * 294.86066 * 14 13 11 17 17 C 1.55180 * 99.58839 * 73.94721 * 16 14 13 18 18 H 1.08997 * 112.48452 * 162.91537 * 17 16 14 19 19 C 1.52986 * 109.32887 * 169.39011 * 11 10 8 20 20 N 1.47788 * 104.87855 * 40.38408 * 17 16 14 21 21 C 1.36937 * 125.85511 * 153.27563 * 20 17 16 22 22 H 1.07999 * 119.99865 * 0.02562 * 21 20 17 23 23 C 1.38809 * 120.00053 * 180.02562 * 21 20 17 24 24 N 1.31618 * 119.99929 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99977 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47202 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.46997 * 120.00127 * 25 23 21 28 28 H 1.48505 * 109.47268 * 239.99983 * 25 23 21 29 29 C 1.47083 * 108.28805 * 333.26183 * 20 17 16 30 30 C 1.38238 * 120.00277 * 0.25068 * 6 5 4 31 31 C 1.38228 * 120.00317 * 270.02390 * 3 2 1 32 32 H 1.08999 * 109.47681 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47165 * 299.99981 * 1 2 3 34 34 H 1.09000 * 109.47489 * 59.99486 * 1 2 3 35 35 H 1.09003 * 109.47165 * 240.00018 * 2 1 3 36 36 H 1.09000 * 109.46967 * 120.00475 * 2 1 3 37 37 H 1.07998 * 120.00022 * 0.02562 * 4 3 2 38 38 H 1.07996 * 119.99637 * 180.02562 * 5 4 3 39 39 H 1.09000 * 109.47070 * 330.00543 * 7 6 5 40 40 H 1.09000 * 109.47427 * 210.00102 * 7 6 5 41 41 H 0.97003 * 120.00558 * 0.02562 * 10 8 7 42 42 H 1.08998 * 108.54373 * 174.67463 * 13 11 10 43 43 H 1.08998 * 111.20759 * 54.05887 * 13 11 10 44 44 H 1.08994 * 111.97322 * 316.28283 * 16 14 13 45 45 H 1.08997 * 111.20987 * 191.29921 * 16 14 13 46 46 H 1.09000 * 109.53341 * 305.29583 * 19 11 10 47 47 H 1.09003 * 109.53403 * 185.13700 * 19 11 10 48 48 H 0.97000 * 120.00071 * 179.97438 * 24 23 21 49 49 H 1.09006 * 109.97949 * 120.45849 * 29 20 17 50 50 H 1.08998 * 109.97539 * 241.73626 * 29 20 17 51 51 H 1.08001 * 120.00335 * 179.72197 * 30 6 5 52 52 H 1.08003 * 119.99763 * 0.02562 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7241 3.3755 1.1973 6 6 2.9545 4.0271 0.0001 7 6 3.4569 5.4479 0.0001 8 6 4.9639 5.4478 0.0002 9 8 5.5703 4.3974 -0.0003 10 7 5.6378 6.6149 -0.0004 11 6 7.1028 6.6149 -0.0009 12 1 7.4606 5.9506 -0.7876 13 6 7.5708 6.0935 1.3610 14 6 7.1622 7.1158 2.4373 15 1 7.2962 6.7420 3.4524 16 6 7.9709 8.4330 2.1523 17 6 7.2018 8.9437 0.9050 18 1 7.3939 9.9967 0.6991 19 6 7.6092 8.0338 -0.2672 20 7 5.7787 8.6769 1.2012 21 6 4.7107 9.3681 0.6945 22 1 4.8735 10.1901 0.0132 23 6 3.4187 9.0125 1.0568 24 7 3.2203 8.0111 1.8876 25 14 1.9618 9.9550 0.3651 26 1 2.4500 11.0273 -0.5388 27 1 1.0871 9.0263 -0.3948 28 1 1.1901 10.5612 1.4797 29 6 5.7062 7.5412 2.1331 30 6 2.7187 3.3775 -1.1971 31 6 2.2623 2.0726 -1.1971 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8899 37 1 2.0830 1.5631 2.1325 38 1 2.9044 3.8844 2.1326 39 1 3.0937 5.9617 0.8902 40 1 3.0936 5.9618 -0.8898 41 1 5.1530 7.4551 -0.0004 42 1 8.6564 5.9982 1.3412 43 1 7.1232 5.1259 1.5877 44 1 9.0148 8.2275 1.9157 45 1 7.8871 9.1345 2.9823 46 1 7.1694 8.4103 -1.1907 47 1 8.6953 8.0219 -0.3590 48 1 2.3175 7.7628 2.1410 49 1 5.2071 7.8457 3.0531 50 1 5.1655 6.7149 1.6717 51 1 2.8944 3.8881 -2.1324 52 1 2.0815 1.5638 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047152908.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:42 Heat of formation + Delta-G solvation = 49.108006 kcal Electronic energy + Delta-G solvation = -31951.751854 eV Core-core repulsion = 28110.916519 eV Total energy + Delta-G solvation = -3840.835335 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.66157 -39.22051 -37.61445 -34.39300 -33.69295 -33.01518 -30.97433 -30.74354 -30.54517 -30.17961 -28.07273 -26.44650 -25.31155 -23.22241 -23.18300 -22.35383 -21.59119 -20.36932 -19.64629 -19.24357 -18.70291 -17.17563 -16.17697 -15.89878 -15.43227 -15.16439 -15.07551 -14.64047 -14.51880 -14.04073 -13.63838 -13.58795 -13.50983 -13.05207 -12.95145 -12.70205 -12.57095 -12.39970 -12.19497 -11.85989 -11.84724 -11.71577 -11.64429 -11.45019 -11.39213 -11.33352 -11.00522 -10.96017 -10.87854 -10.57583 -10.51750 -10.47094 -10.14478 -9.85012 -9.74108 -9.60455 -9.37058 -8.90402 -8.80537 -8.51898 -8.07492 -7.37878 -6.95032 -5.95018 -3.32386 1.72090 1.80997 3.25714 3.33865 3.35815 3.64358 4.02855 4.28970 4.47012 4.89053 4.97216 5.17226 5.21322 5.28708 5.30029 5.32436 5.36261 5.41267 5.47434 5.58914 5.63039 5.74341 5.80313 5.81633 5.88141 5.91943 5.93276 6.01329 6.04694 6.11178 6.13462 6.14802 6.19412 6.28219 6.31974 6.37233 6.46855 6.50457 6.61410 6.69518 6.74491 6.80072 6.85631 6.89235 6.91765 6.94297 7.14061 7.41172 7.45554 7.61721 7.63360 7.78411 8.04869 8.81180 9.01014 9.41969 9.55833 10.24535 11.11436 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012269 B = 0.003943 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.625733 B = 7098.727125 C = 8495.142944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.097 4.097 4 C -0.118 4.118 5 C -0.100 4.100 6 C -0.046 4.046 7 C -0.115 4.115 8 C 0.512 3.488 9 O -0.574 6.574 10 N -0.697 5.697 11 C 0.161 3.839 12 H 0.057 0.943 13 C -0.120 4.120 14 C -0.120 4.120 15 H 0.072 0.928 16 C -0.128 4.128 17 C 0.150 3.850 18 H 0.065 0.935 19 C -0.140 4.140 20 N -0.596 5.596 21 C -0.245 4.245 22 H 0.082 0.918 23 C -0.002 4.002 24 N -0.909 5.909 25 Si 0.905 3.095 26 H -0.279 1.279 27 H -0.287 1.287 28 H -0.289 1.289 29 C 0.148 3.852 30 C -0.109 4.109 31 C -0.120 4.120 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.135 0.865 40 H 0.085 0.915 41 H 0.438 0.562 42 H 0.051 0.949 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.256 0.744 49 H 0.035 0.965 50 H 0.087 0.913 51 H 0.115 0.885 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.819 -7.929 -2.855 8.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.097 4.097 4 C -0.136 4.136 5 C -0.118 4.118 6 C -0.047 4.047 7 C -0.155 4.155 8 C 0.299 3.701 9 O -0.456 6.456 10 N -0.364 5.364 11 C 0.055 3.945 12 H 0.075 0.925 13 C -0.159 4.159 14 C -0.139 4.139 15 H 0.091 0.909 16 C -0.167 4.167 17 C 0.043 3.957 18 H 0.083 0.917 19 C -0.180 4.180 20 N -0.323 5.323 21 C -0.373 4.373 22 H 0.100 0.900 23 C -0.199 4.199 24 N -0.556 5.556 25 Si 0.735 3.265 26 H -0.204 1.204 27 H -0.213 1.213 28 H -0.215 1.215 29 C 0.024 3.976 30 C -0.127 4.127 31 C -0.138 4.138 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.153 0.847 40 H 0.104 0.896 41 H 0.293 0.707 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.067 0.933 49 H 0.053 0.947 50 H 0.105 0.895 51 H 0.133 0.867 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.951 -8.558 -2.852 9.071 hybrid contribution -0.895 1.040 -0.232 1.392 sum 0.056 -7.518 -3.084 8.126 Atomic orbital electron populations 1.21747 0.95112 1.01200 1.02235 1.20478 0.95844 0.93154 1.02359 1.19739 1.00714 0.95909 0.93358 1.20900 1.00730 0.94908 0.97106 1.21032 0.98342 0.94541 0.97903 1.19519 0.96746 0.95314 0.93099 1.20910 0.93595 0.93927 1.07045 1.20309 0.89496 0.84030 0.76264 1.90586 1.70524 1.32214 1.52271 1.47687 1.06609 1.11344 1.70738 1.20646 0.81731 0.95781 0.96336 0.92500 1.22059 0.99344 0.99238 0.95232 1.23133 0.99031 0.94545 0.97235 0.90935 1.23247 0.97421 0.97542 0.98467 1.21589 0.85789 0.96023 0.92309 0.91687 1.22489 0.99389 0.95481 1.00613 1.44979 0.99590 1.35577 1.52107 1.19218 0.84095 1.11781 1.22189 0.90001 1.24808 0.97221 0.98657 0.99251 1.69974 1.20430 1.28840 1.36318 0.86146 0.82739 0.79343 0.78279 1.20437 1.21326 1.21533 1.22146 0.90382 0.91571 0.93527 1.20960 0.99504 0.94761 0.97516 1.20844 1.01052 0.94837 0.97078 0.92809 0.92573 0.92656 0.91466 0.91391 0.86673 0.86038 0.84723 0.89647 0.70679 0.93015 0.90855 0.92008 0.92145 0.91968 0.91945 0.93299 0.94686 0.89540 0.86713 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.89 37.16 0.37 -1.04 16 2 C -0.08 -0.89 6.06 -27.89 -0.17 -1.05 16 3 C -0.10 -1.38 5.13 -104.63 -0.54 -1.92 16 4 C -0.12 -1.80 9.70 -39.58 -0.38 -2.19 16 5 C -0.10 -1.76 9.70 -39.58 -0.38 -2.14 16 6 C -0.05 -0.86 4.37 -104.62 -0.46 -1.31 16 7 C -0.12 -2.29 5.79 -29.04 -0.17 -2.46 16 8 C 0.51 10.97 6.05 -10.99 -0.07 10.91 16 9 O -0.57 -13.37 14.69 5.56 0.08 -13.29 16 10 N -0.70 -14.52 2.76 -53.74 -0.15 -14.67 16 11 C 0.16 3.02 2.78 -67.86 -0.19 2.83 16 12 H 0.06 1.08 8.02 -51.93 -0.42 0.67 16 13 C -0.12 -2.20 5.14 -26.15 -0.13 -2.34 16 14 C -0.12 -2.26 4.31 -86.95 -0.37 -2.63 16 15 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 16 C -0.13 -2.17 6.31 -23.31 -0.15 -2.32 16 17 C 0.15 2.79 4.25 -65.61 -0.28 2.51 16 18 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 19 C -0.14 -2.37 5.44 -26.28 -0.14 -2.51 16 20 N -0.60 -13.12 1.77 -161.36 -0.29 -13.41 16 21 C -0.25 -5.84 8.72 -15.06 -0.13 -5.97 16 22 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 23 C 0.00 -0.04 5.17 -17.43 -0.09 -0.14 16 24 N -0.91 -22.34 8.42 55.49 0.47 -21.87 16 25 Si 0.91 19.66 29.55 -169.99 -5.02 14.63 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.29 -6.28 7.11 56.52 0.40 -5.87 16 28 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 29 C 0.15 3.29 3.88 -2.83 -0.01 3.28 16 30 C -0.11 -1.83 9.70 -39.58 -0.38 -2.22 16 31 C -0.12 -1.78 9.70 -39.59 -0.38 -2.16 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 36 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 37 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 39 H 0.14 2.89 5.92 -51.93 -0.31 2.58 16 40 H 0.09 1.62 8.08 -51.93 -0.42 1.20 16 41 H 0.44 9.66 3.69 -40.82 -0.15 9.51 16 42 H 0.05 0.83 8.03 -51.93 -0.42 0.41 16 43 H 0.07 1.50 6.76 -51.93 -0.35 1.15 16 44 H 0.06 0.90 7.83 -51.93 -0.41 0.50 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.06 0.90 8.00 -51.93 -0.42 0.48 16 48 H 0.26 6.23 8.31 -40.82 -0.34 5.89 16 49 H 0.03 0.89 7.40 -51.93 -0.38 0.51 16 50 H 0.09 2.03 3.16 -60.80 -0.19 1.84 16 51 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 52 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 LS Contribution 389.08 15.07 5.86 5.86 Total: -1.00 -26.58 389.08 -11.61 -38.19 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: -8.50 Total: 17.43 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -4.07 Total: -12.87 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.03 Total: -49.95 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -26.58 -11.61 -38.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047152908.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.293 kcal (2) G-P(sol) polarization free energy of solvation -26.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds