Wall clock time and date at job start Wed Apr 1 2020 03:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47443 * 2 1 4 4 C 1.38238 * 119.99775 * 89.99737 * 3 2 1 5 5 C 1.38236 * 120.00053 * 179.97438 * 4 3 2 6 6 C 1.38233 * 119.99695 * 0.02818 * 5 4 3 7 7 C 1.50699 * 119.99973 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.46927 * 89.99905 * 7 6 5 9 9 O 1.21279 * 120.00431 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99751 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00074 * 180.02562 * 10 8 7 12 12 H 1.09007 * 109.17912 * 49.83342 * 11 10 8 13 13 C 1.53150 * 107.77219 * 290.95930 * 11 10 8 14 14 C 1.53967 * 108.33255 * 293.58515 * 13 11 10 15 15 H 1.08999 * 112.99729 * 169.64150 * 14 13 11 16 16 C 1.57170 * 107.04451 * 294.86066 * 14 13 11 17 17 C 1.55180 * 99.58839 * 73.94721 * 16 14 13 18 18 H 1.08997 * 112.48452 * 162.91537 * 17 16 14 19 19 C 1.52986 * 109.32887 * 169.39011 * 11 10 8 20 20 N 1.47788 * 104.87855 * 40.38408 * 17 16 14 21 21 C 1.36937 * 125.85511 * 153.27563 * 20 17 16 22 22 H 1.07999 * 119.99865 * 0.02562 * 21 20 17 23 23 C 1.38809 * 120.00053 * 180.02562 * 21 20 17 24 24 N 1.31618 * 119.99929 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99977 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47202 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.46997 * 120.00127 * 25 23 21 28 28 H 1.48505 * 109.47268 * 239.99983 * 25 23 21 29 29 C 1.47083 * 108.28805 * 333.26183 * 20 17 16 30 30 C 1.38238 * 120.00277 * 0.25068 * 6 5 4 31 31 C 1.38228 * 120.00317 * 270.02390 * 3 2 1 32 32 H 1.08999 * 109.47681 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47165 * 299.99981 * 1 2 3 34 34 H 1.09000 * 109.47489 * 59.99486 * 1 2 3 35 35 H 1.09003 * 109.47165 * 240.00018 * 2 1 3 36 36 H 1.09000 * 109.46967 * 120.00475 * 2 1 3 37 37 H 1.07998 * 120.00022 * 0.02562 * 4 3 2 38 38 H 1.07996 * 119.99637 * 180.02562 * 5 4 3 39 39 H 1.09000 * 109.47070 * 330.00543 * 7 6 5 40 40 H 1.09000 * 109.47427 * 210.00102 * 7 6 5 41 41 H 0.97003 * 120.00558 * 0.02562 * 10 8 7 42 42 H 1.08998 * 108.54373 * 174.67463 * 13 11 10 43 43 H 1.08998 * 111.20759 * 54.05887 * 13 11 10 44 44 H 1.08994 * 111.97322 * 316.28283 * 16 14 13 45 45 H 1.08997 * 111.20987 * 191.29921 * 16 14 13 46 46 H 1.09000 * 109.53341 * 305.29583 * 19 11 10 47 47 H 1.09003 * 109.53403 * 185.13700 * 19 11 10 48 48 H 0.97000 * 120.00071 * 179.97438 * 24 23 21 49 49 H 1.09006 * 109.97949 * 120.45849 * 29 20 17 50 50 H 1.08998 * 109.97539 * 241.73626 * 29 20 17 51 51 H 1.08001 * 120.00335 * 179.72197 * 30 6 5 52 52 H 1.08003 * 119.99763 * 0.02562 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7241 3.3755 1.1973 6 6 2.9545 4.0271 0.0001 7 6 3.4569 5.4479 0.0001 8 6 4.9639 5.4478 0.0002 9 8 5.5703 4.3974 -0.0003 10 7 5.6378 6.6149 -0.0004 11 6 7.1028 6.6149 -0.0009 12 1 7.4606 5.9506 -0.7876 13 6 7.5708 6.0935 1.3610 14 6 7.1622 7.1158 2.4373 15 1 7.2962 6.7420 3.4524 16 6 7.9709 8.4330 2.1523 17 6 7.2018 8.9437 0.9050 18 1 7.3939 9.9967 0.6991 19 6 7.6092 8.0338 -0.2672 20 7 5.7787 8.6769 1.2012 21 6 4.7107 9.3681 0.6945 22 1 4.8735 10.1901 0.0132 23 6 3.4187 9.0125 1.0568 24 7 3.2203 8.0111 1.8876 25 14 1.9618 9.9550 0.3651 26 1 2.4500 11.0273 -0.5388 27 1 1.0871 9.0263 -0.3948 28 1 1.1901 10.5612 1.4797 29 6 5.7062 7.5412 2.1331 30 6 2.7187 3.3775 -1.1971 31 6 2.2623 2.0726 -1.1971 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8899 37 1 2.0830 1.5631 2.1325 38 1 2.9044 3.8844 2.1326 39 1 3.0937 5.9617 0.8902 40 1 3.0936 5.9618 -0.8898 41 1 5.1530 7.4551 -0.0004 42 1 8.6564 5.9982 1.3412 43 1 7.1232 5.1259 1.5877 44 1 9.0148 8.2275 1.9157 45 1 7.8871 9.1345 2.9823 46 1 7.1694 8.4103 -1.1907 47 1 8.6953 8.0219 -0.3590 48 1 2.3175 7.7628 2.1410 49 1 5.2071 7.8457 3.0531 50 1 5.1655 6.7149 1.6717 51 1 2.8944 3.8881 -2.1324 52 1 2.0815 1.5638 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047152908.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:40 Heat of formation + Delta-G solvation = 39.374500 kcal Electronic energy + Delta-G solvation = -31952.173930 eV Core-core repulsion = 28110.916519 eV Total energy + Delta-G solvation = -3841.257411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.24139 -40.51322 -39.18582 -35.67065 -35.26178 -34.64527 -32.39981 -32.28509 -31.79263 -31.67726 -29.56059 -27.77653 -27.00929 -24.86255 -24.27307 -23.60135 -22.98168 -21.63462 -21.27412 -20.79246 -20.25772 -18.90127 -17.81276 -17.23283 -16.87206 -16.61408 -16.47516 -16.26435 -15.91276 -15.54165 -15.27598 -14.64849 -14.61085 -14.45825 -14.32966 -14.09812 -13.92594 -13.87349 -13.63058 -13.39634 -13.33679 -13.16793 -13.08129 -12.83161 -12.79967 -12.70371 -12.57768 -12.45312 -12.15834 -12.02217 -11.84396 -11.66401 -11.63110 -11.58745 -11.34738 -11.08305 -10.89240 -10.67733 -10.50847 -9.77934 -9.35491 -9.04580 -8.73007 -7.79695 -5.17645 0.45885 0.54578 1.48212 1.53529 1.58998 1.95206 2.49715 2.65317 3.03623 3.34219 3.65253 3.80318 3.84189 3.91458 3.99273 4.02552 4.08842 4.16541 4.26281 4.34737 4.36636 4.46835 4.50395 4.53078 4.55359 4.61470 4.64786 4.73831 4.77803 4.79470 4.87721 4.91660 4.98998 5.07496 5.09400 5.10239 5.14221 5.22377 5.26328 5.29415 5.37028 5.39647 5.41816 5.51277 5.54711 5.60646 5.74046 5.79800 5.81054 5.95721 6.05006 6.17581 6.23400 7.07145 7.20252 7.72422 7.77947 8.44984 9.24477 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012269 B = 0.003943 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.625733 B = 7098.727125 C = 8495.142944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 C -0.093 4.093 4 C -0.122 4.122 5 C -0.122 4.122 6 C -0.073 4.073 7 C -0.107 4.107 8 C 0.509 3.491 9 O -0.597 6.597 10 N -0.699 5.699 11 C 0.152 3.848 12 H 0.056 0.944 13 C -0.111 4.111 14 C -0.119 4.119 15 H 0.078 0.922 16 C -0.114 4.114 17 C 0.140 3.860 18 H 0.074 0.926 19 C -0.129 4.129 20 N -0.606 5.606 21 C -0.250 4.250 22 H 0.085 0.915 23 C -0.039 4.039 24 N -0.923 5.923 25 Si 0.953 3.047 26 H -0.270 1.270 27 H -0.291 1.291 28 H -0.301 1.301 29 C 0.153 3.847 30 C -0.123 4.123 31 C -0.120 4.120 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.137 0.863 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.433 0.567 42 H 0.085 0.915 43 H 0.045 0.955 44 H 0.099 0.901 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.101 0.899 48 H 0.248 0.752 49 H -0.010 1.010 50 H 0.072 0.928 51 H 0.121 0.879 52 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 -8.934 -3.979 10.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.093 4.093 4 C -0.140 4.140 5 C -0.140 4.140 6 C -0.073 4.073 7 C -0.146 4.146 8 C 0.296 3.704 9 O -0.480 6.480 10 N -0.364 5.364 11 C 0.047 3.953 12 H 0.074 0.926 13 C -0.150 4.150 14 C -0.138 4.138 15 H 0.097 0.903 16 C -0.152 4.152 17 C 0.034 3.966 18 H 0.092 0.908 19 C -0.168 4.168 20 N -0.333 5.333 21 C -0.378 4.378 22 H 0.103 0.897 23 C -0.234 4.234 24 N -0.570 5.570 25 Si 0.783 3.217 26 H -0.195 1.195 27 H -0.218 1.218 28 H -0.229 1.229 29 C 0.028 3.972 30 C -0.141 4.141 31 C -0.138 4.138 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.155 0.845 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.103 0.897 41 H 0.287 0.713 42 H 0.103 0.897 43 H 0.064 0.936 44 H 0.117 0.883 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.120 0.880 48 H 0.058 0.942 49 H 0.008 0.992 50 H 0.089 0.911 51 H 0.139 0.861 52 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.275 -9.541 -3.988 10.588 hybrid contribution -1.303 1.331 0.137 1.867 sum 0.972 -8.210 -3.851 9.120 Atomic orbital electron populations 1.21731 0.94035 1.02483 1.01808 1.20557 0.96627 0.90778 1.03665 1.20187 0.99014 0.97516 0.92577 1.21174 1.00018 0.93978 0.98802 1.21079 0.99820 0.95890 0.97184 1.19525 0.98633 0.94845 0.94307 1.20767 0.92826 0.95193 1.05859 1.20533 0.90064 0.83907 0.75865 1.90547 1.71031 1.32880 1.53544 1.47792 1.07774 1.10761 1.70028 1.20907 0.80551 0.97232 0.96625 0.92555 1.21953 1.01065 0.97449 0.94503 1.23083 0.96938 0.95952 0.97859 0.90334 1.23219 0.98784 0.95730 0.97444 1.21871 0.83897 0.97053 0.93793 0.90769 1.22410 1.01642 0.93330 0.99440 1.45098 1.00975 1.35324 1.51866 1.19421 0.84839 1.11646 1.21919 0.89742 1.25299 0.98866 0.99387 0.99895 1.70134 1.19957 1.29716 1.37228 0.85392 0.80561 0.78427 0.77312 1.19503 1.21822 1.22851 1.21952 0.92498 0.91233 0.91474 1.21139 0.99992 0.95894 0.97063 1.21203 0.99875 0.94030 0.98692 0.90688 0.93230 0.92921 0.89979 0.90330 0.84525 0.87430 0.86758 0.89708 0.71341 0.89686 0.93635 0.88271 0.92426 0.92362 0.88040 0.94157 0.99177 0.91091 0.86101 0.83923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.89 71.98 0.71 -1.68 16 2 C -0.08 -1.51 6.06 29.85 0.18 -1.32 16 3 C -0.09 -2.50 5.13 -19.87 -0.10 -2.61 16 4 C -0.12 -3.69 9.70 22.27 0.22 -3.48 16 5 C -0.12 -4.48 9.70 22.27 0.22 -4.26 16 6 C -0.07 -2.81 4.37 -19.87 -0.09 -2.90 16 7 C -0.11 -4.51 5.79 29.10 0.17 -4.35 16 8 C 0.51 22.70 6.05 87.66 0.53 23.23 16 9 O -0.60 -28.65 14.69 -3.03 -0.04 -28.70 16 10 N -0.70 -29.67 2.76 -442.31 -1.22 -30.89 16 11 C 0.15 5.53 2.78 45.04 0.12 5.65 16 12 H 0.06 2.07 8.02 -2.38 -0.02 2.05 16 13 C -0.11 -3.92 5.14 30.97 0.16 -3.76 16 14 C -0.12 -4.37 4.31 -8.42 -0.04 -4.41 16 15 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 16 C -0.11 -3.52 6.31 32.81 0.21 -3.31 16 17 C 0.14 4.90 4.25 45.79 0.19 5.09 16 18 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 19 C -0.13 -4.00 5.44 30.89 0.17 -3.83 16 20 N -0.61 -26.77 1.77 -664.44 -1.18 -27.95 16 21 C -0.25 -12.03 8.72 84.03 0.73 -11.30 16 22 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 23 C -0.04 -1.91 5.17 84.86 0.44 -1.47 16 24 N -0.92 -47.75 8.42 21.65 0.18 -47.57 16 25 Si 0.95 41.41 29.55 68.60 2.03 43.44 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 27 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 28 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 29 C 0.15 7.02 3.88 86.85 0.34 7.35 16 30 C -0.12 -4.17 9.70 22.27 0.22 -3.95 16 31 C -0.12 -3.41 9.70 22.27 0.22 -3.19 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 1.36 8.09 -2.39 -0.02 1.34 16 36 H 0.08 1.36 8.09 -2.39 -0.02 1.34 16 37 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 38 H 0.11 4.11 8.06 -2.91 -0.02 4.08 16 39 H 0.11 5.31 5.92 -2.39 -0.01 5.30 16 40 H 0.08 3.44 8.08 -2.39 -0.02 3.43 16 41 H 0.43 19.54 3.69 -92.71 -0.34 19.19 16 42 H 0.08 2.43 8.03 -2.39 -0.02 2.41 16 43 H 0.04 1.86 6.76 -2.39 -0.02 1.85 16 44 H 0.10 2.38 7.83 -2.39 -0.02 2.36 16 45 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.10 2.41 8.00 -2.39 -0.02 2.39 16 48 H 0.25 12.84 8.31 -92.71 -0.77 12.07 16 49 H -0.01 -0.54 7.40 -2.38 -0.02 -0.56 16 50 H 0.07 3.50 3.16 -19.90 -0.06 3.43 16 51 H 0.12 3.80 8.06 -2.91 -0.02 3.78 16 52 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -60.04 389.08 4.87 -55.17 By element: Atomic # 1 Polarization: 50.49 SS G_CDS: 0.51 Total: 51.00 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 4.59 Total: -14.50 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -2.22 Total: -106.41 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.04 Total: -28.70 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -60.04 4.87 -55.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047152908.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.545 kcal (2) G-P(sol) polarization free energy of solvation -60.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds