Wall clock time and date at job start Wed Apr 1 2020 03:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.47012 * 2 1 4 4 C 1.50696 * 109.47406 * 120.00013 * 2 1 3 5 5 C 1.38262 * 119.99603 * 300.00180 * 4 2 1 6 6 C 1.38223 * 119.99693 * 180.02562 * 5 4 2 7 7 C 1.38258 * 119.99996 * 359.97438 * 6 5 4 8 8 C 1.38212 * 120.00111 * 359.95992 * 7 6 5 9 9 C 1.50699 * 119.99990 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47389 * 89.99679 * 9 8 7 11 11 O 1.21283 * 119.99861 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00231 * 179.97438 * 10 9 8 13 13 C 1.46666 * 125.34126 * 179.97438 * 12 10 9 14 14 C 1.53723 * 107.94434 * 180.54534 * 13 12 10 15 15 H 1.09007 * 112.56227 * 139.72347 * 14 13 12 16 16 C 1.53684 * 109.34555 * 266.25894 * 14 13 12 17 17 N 1.47168 * 107.73764 * 128.69681 * 16 14 13 18 18 C 1.36939 * 125.25452 * 180.40315 * 17 16 14 19 19 H 1.08000 * 119.99772 * 173.12112 * 18 17 16 20 20 C 1.38809 * 120.00086 * 353.11262 * 18 17 16 21 21 N 1.31622 * 120.00040 * 6.96261 * 20 18 17 22 22 Si 1.86798 * 120.00006 * 186.95577 * 20 18 17 23 23 H 1.48500 * 109.47330 * 94.98978 * 22 20 18 24 24 H 1.48496 * 109.47372 * 214.98974 * 22 20 18 25 25 H 1.48503 * 109.47373 * 334.99052 * 22 20 18 26 26 C 1.46742 * 109.40948 * 359.64943 * 17 16 14 27 27 C 1.53929 * 106.72263 * 342.40806 * 26 17 16 28 28 H 1.08997 * 113.01200 * 150.83071 * 27 26 17 29 29 C 1.46777 * 125.33535 * 359.69879 * 12 10 9 30 30 C 1.38210 * 120.00565 * 120.21375 * 4 2 1 31 31 H 1.09002 * 109.47210 * 299.99822 * 1 2 3 32 32 H 1.09000 * 109.46876 * 60.00559 * 1 2 3 33 33 H 1.09002 * 109.46706 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47210 * 240.00178 * 2 1 3 35 35 H 1.08994 * 109.47147 * 59.99730 * 3 2 1 36 36 H 1.08999 * 109.46831 * 180.02562 * 3 2 1 37 37 H 1.09001 * 109.46447 * 299.99823 * 3 2 1 38 38 H 1.07997 * 120.00109 * 359.97438 * 5 4 2 39 39 H 1.08000 * 119.99809 * 179.97438 * 6 5 4 40 40 H 1.07997 * 119.99630 * 179.97438 * 7 6 5 41 41 H 1.09002 * 109.46798 * 329.99137 * 9 8 7 42 42 H 1.09004 * 109.46932 * 209.99899 * 9 8 7 43 43 H 1.08992 * 109.77445 * 300.17094 * 13 12 10 44 44 H 1.09004 * 109.76805 * 60.93196 * 13 12 10 45 45 H 1.09008 * 109.76185 * 247.19821 * 16 14 13 46 46 H 1.09002 * 109.76377 * 7.91249 * 16 14 13 47 47 H 0.97001 * 120.00016 * 179.97438 * 21 20 18 48 48 H 1.09008 * 110.00713 * 223.09052 * 26 17 16 49 49 H 1.09005 * 110.00969 * 101.72981 * 26 17 16 50 50 H 1.09002 * 110.02460 * 280.76764 * 29 12 10 51 51 H 1.09000 * 110.03185 * 42.18418 * 29 12 10 52 52 H 1.08009 * 119.99754 * 0.02562 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6983 -0.2380 2.4861 6 6 2.1596 -0.8892 3.6147 7 6 2.9545 -2.0133 3.4878 8 6 3.2873 -2.4863 2.2325 9 6 4.1533 -3.7118 2.0943 10 6 3.2817 -4.9404 2.0497 11 8 2.0760 -4.8315 2.1224 12 7 3.8420 -6.1601 1.9278 13 6 3.1085 -7.4290 1.8732 14 6 4.1363 -8.5650 1.7460 15 1 3.8761 -9.4341 2.3504 16 6 4.3395 -8.9038 0.2608 17 7 5.7859 -8.8847 -0.0097 18 6 6.3660 -9.1303 -1.2256 19 1 7.4283 -8.9856 -1.3561 20 6 5.5888 -9.5653 -2.2902 21 7 4.2786 -9.6108 -2.1731 22 14 6.4022 -10.0859 -3.8891 23 1 6.5962 -11.5582 -3.8894 24 1 5.5374 -9.7005 -5.0330 25 1 7.7200 -9.4131 -4.0162 26 6 6.5078 -8.5441 1.2217 27 6 5.4796 -7.9134 2.1778 28 1 5.7188 -8.0765 3.2286 29 6 5.2816 -6.4264 1.8233 30 6 2.8307 -1.8315 1.1037 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.1300 1.4426 -0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.0777 0.6403 2.5852 39 1 1.8990 -0.5200 4.5956 40 1 3.3152 -2.5219 4.3697 41 1 4.8296 -3.7768 2.9466 42 1 4.7338 -3.6446 1.1742 43 1 2.5270 -7.5584 2.7859 44 1 2.4445 -7.4341 1.0088 45 1 3.9539 -9.9024 0.0545 46 1 3.8195 -8.1729 -0.3585 47 1 3.7354 -9.9145 -2.9172 48 1 7.3014 -7.8294 1.0032 49 1 6.9292 -9.4448 1.6683 50 1 5.6240 -6.2336 0.8065 51 1 5.8293 -5.7997 2.5271 52 1 3.0948 -2.1983 0.1227 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048918858.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:42 Heat of formation + Delta-G solvation = 4.566894 kcal Electronic energy + Delta-G solvation = -29905.806714 eV Core-core repulsion = 26063.039932 eV Total energy + Delta-G solvation = -3842.766782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.03 seconds Orbital eigenvalues (eV) -40.34184 -39.58259 -38.09207 -35.67235 -34.88037 -32.64986 -32.18940 -30.49337 -30.04271 -29.43127 -27.64123 -27.32927 -25.50437 -25.33400 -23.37007 -22.93344 -22.10904 -20.14115 -19.94235 -19.28733 -18.80539 -17.10800 -16.75122 -16.63919 -16.10621 -15.73506 -15.32909 -14.80364 -14.67471 -14.36461 -13.97667 -13.85256 -13.74745 -13.65945 -13.21284 -13.05892 -12.97965 -12.77792 -12.52374 -12.16654 -12.12434 -12.05493 -11.92824 -11.88493 -11.50688 -11.50466 -11.36602 -11.30211 -10.91024 -10.84087 -10.77766 -10.73331 -10.42610 -10.11453 -10.09993 -9.89408 -9.69417 -9.61538 -8.79858 -8.62652 -8.59885 -8.30000 -6.86538 -5.76624 -3.09684 1.31133 1.39612 2.85630 3.24405 3.37781 3.43046 3.45323 3.78403 4.46427 4.46676 4.58179 4.67778 4.74385 4.86174 4.93131 5.01715 5.06568 5.11072 5.17143 5.24693 5.31057 5.39991 5.41918 5.45515 5.46582 5.51071 5.57535 5.62053 5.64602 5.67740 5.70672 5.81476 5.85872 5.94263 5.96688 6.05117 6.06132 6.08417 6.16309 6.27568 6.36980 6.43496 6.52991 6.55158 6.56690 6.61209 6.63493 6.78953 6.98902 7.50551 7.58024 7.78025 7.80359 8.22414 8.40416 9.17437 9.78783 10.42864 11.35192 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013046 B = 0.002547 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.799607 B =10991.693970 C =12238.905114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C -0.142 4.142 4 C -0.076 4.076 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.110 4.110 8 C -0.057 4.057 9 C -0.099 4.099 10 C 0.528 3.472 11 O -0.540 6.540 12 N -0.609 5.609 13 C 0.121 3.879 14 C -0.123 4.123 15 H 0.090 0.910 16 C 0.184 3.816 17 N -0.603 5.603 18 C -0.232 4.232 19 H 0.078 0.922 20 C -0.005 4.005 21 N -0.918 5.918 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.147 3.853 27 C -0.111 4.111 28 H 0.089 0.911 29 C 0.111 3.889 30 C -0.102 4.102 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.049 0.951 46 H 0.046 0.954 47 H 0.253 0.747 48 H 0.036 0.964 49 H 0.022 0.978 50 H 0.078 0.922 51 H 0.065 0.935 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.103 17.849 11.207 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.077 4.077 3 C -0.200 4.200 4 C -0.076 4.076 5 C -0.136 4.136 6 C -0.136 4.136 7 C -0.128 4.128 8 C -0.057 4.057 9 C -0.139 4.139 10 C 0.316 3.684 11 O -0.417 6.417 12 N -0.343 5.343 13 C -0.001 4.001 14 C -0.143 4.143 15 H 0.109 0.891 16 C 0.059 3.941 17 N -0.330 5.330 18 C -0.360 4.360 19 H 0.096 0.904 20 C -0.202 4.202 21 N -0.565 5.565 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.020 3.980 27 C -0.131 4.131 28 H 0.107 0.893 29 C -0.012 4.012 30 C -0.120 4.120 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.054 0.946 49 H 0.039 0.961 50 H 0.096 0.904 51 H 0.083 0.917 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.857 17.915 11.024 21.228 hybrid contribution 0.431 -0.478 -0.869 1.082 sum -2.425 17.437 10.154 20.324 Atomic orbital electron populations 1.21851 0.94321 1.02289 1.01648 1.20134 0.96042 0.95905 0.95576 1.21850 1.01205 0.95167 1.01738 1.19777 0.97450 0.95671 0.94656 1.20894 1.00531 1.00155 0.92012 1.21030 0.98211 0.96051 0.98350 1.20929 0.98761 0.96562 0.96576 1.19274 0.98060 0.94894 0.93510 1.20665 0.97605 0.90515 1.05117 1.20064 0.88522 0.83092 0.76739 1.90707 1.14747 1.85977 1.50260 1.48289 1.08223 1.05848 1.71894 1.21802 0.94733 0.82197 1.01407 1.23154 0.93289 0.96415 1.01424 0.89133 1.21225 0.85292 1.00879 0.86661 1.44356 1.01390 1.82471 1.04786 1.19028 0.92675 1.38179 0.86150 0.90392 1.24825 0.95583 1.01360 0.98415 1.69970 1.02892 1.52320 1.31323 0.86128 0.78201 0.78562 0.83036 1.21587 1.21791 1.20632 1.21138 0.93242 0.96258 0.87342 1.22935 0.97234 0.93511 0.99414 0.89307 1.22120 0.80727 0.96432 1.01885 1.20914 0.97741 0.95160 0.98141 0.92583 0.92470 0.92298 0.90412 0.92565 0.92546 0.92476 0.86470 0.86292 0.86447 0.88170 0.87938 0.92431 0.91000 0.93242 0.93547 0.93680 0.94579 0.96074 0.90352 0.91658 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.01 37.16 0.33 -0.96 16 2 C -0.06 -0.56 3.09 -91.77 -0.28 -0.84 16 3 C -0.14 -1.12 9.01 37.16 0.33 -0.79 16 4 C -0.08 -0.87 4.78 -104.63 -0.50 -1.37 16 5 C -0.12 -1.26 8.71 -39.58 -0.34 -1.61 16 6 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 7 C -0.11 -1.31 9.70 -39.58 -0.38 -1.70 16 8 C -0.06 -0.74 4.37 -104.62 -0.46 -1.20 16 9 C -0.10 -1.23 4.86 -29.04 -0.14 -1.37 16 10 C 0.53 8.64 7.83 -10.99 -0.09 8.55 16 11 O -0.54 -10.76 16.34 5.55 0.09 -10.67 16 12 N -0.61 -9.94 3.31 -172.18 -0.57 -10.51 16 13 C 0.12 2.10 6.23 -3.58 -0.02 2.07 16 14 C -0.12 -2.17 4.01 -88.60 -0.36 -2.53 16 15 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 16 C 0.18 4.27 4.78 -3.32 -0.02 4.26 16 17 N -0.60 -14.59 3.39 -171.51 -0.58 -15.18 16 18 C -0.23 -6.24 10.23 -15.06 -0.15 -6.40 16 19 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 20 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 21 N -0.92 -26.51 10.30 55.49 0.57 -25.94 16 22 Si 0.91 21.74 29.56 -169.99 -5.02 16.71 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.15 2.77 6.41 -3.43 -0.02 2.75 16 27 C -0.11 -1.73 4.14 -88.25 -0.37 -2.10 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 29 C 0.11 1.65 5.88 -3.29 -0.02 1.63 16 30 C -0.10 -1.31 9.33 -39.58 -0.37 -1.68 16 31 H 0.06 0.47 7.39 -51.93 -0.38 0.08 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.76 7.88 -51.93 -0.41 0.35 16 35 H 0.06 0.41 7.39 -51.93 -0.38 0.03 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.12 1.02 7.10 -52.49 -0.37 0.65 16 39 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.10 0.99 7.82 -51.93 -0.41 0.58 16 42 H 0.10 1.16 8.08 -51.93 -0.42 0.74 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 1.40 7.44 -51.93 -0.39 1.01 16 45 H 0.05 1.29 7.27 -51.92 -0.38 0.92 16 46 H 0.05 1.22 6.73 -51.93 -0.35 0.87 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.04 0.65 7.98 -51.92 -0.41 0.24 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.08 1.34 7.76 -51.93 -0.40 0.93 16 51 H 0.07 0.75 7.61 -51.93 -0.40 0.36 16 52 H 0.12 1.48 7.95 -52.48 -0.42 1.07 16 LS Contribution 407.91 15.07 6.15 6.15 Total: -1.00 -32.23 407.91 -11.60 -43.83 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -8.89 Total: 0.79 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -3.34 Total: -5.18 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.58 Total: -51.63 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.23 -11.60 -43.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048918858.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.395 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.03 seconds