Wall clock time and date at job start Wed Apr 1 2020 02:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38254 * 119.99844 * 2 1 4 4 C 1.38222 * 120.00114 * 179.74402 * 3 2 1 5 5 C 1.38253 * 119.99674 * 0.54932 * 4 3 2 6 6 C 1.38223 * 119.99745 * 359.70350 * 5 4 3 7 7 C 1.38215 * 120.00206 * 180.27238 * 2 1 3 8 8 C 1.50699 * 119.99812 * 0.02562 * 7 2 1 9 9 H 1.08997 * 109.47167 * 354.54949 * 8 7 2 10 10 C 1.53000 * 109.46907 * 114.55012 * 8 7 2 11 11 C 1.53002 * 109.46983 * 234.55198 * 8 7 2 12 12 C 1.50699 * 109.47114 * 175.00295 * 11 8 7 13 13 O 1.21290 * 119.99840 * 0.02562 * 12 11 8 14 14 N 1.34770 * 120.00281 * 179.97438 * 12 11 8 15 15 C 1.46674 * 125.33963 * 179.97438 * 14 12 11 16 16 C 1.53726 * 107.94159 * 180.54621 * 15 14 12 17 17 H 1.09004 * 112.56006 * 139.71620 * 16 15 14 18 18 C 1.53691 * 109.34163 * 266.25216 * 16 15 14 19 19 N 1.47170 * 107.73302 * 128.69787 * 18 16 15 20 20 C 1.36938 * 125.25703 * 180.39988 * 19 18 16 21 21 H 1.07999 * 120.00106 * 179.13188 * 20 19 18 22 22 C 1.38817 * 119.99544 * 359.13378 * 20 19 18 23 23 N 1.31618 * 120.00260 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99746 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47052 * 60.00409 * 24 22 20 26 26 H 1.48505 * 109.47081 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47358 * 300.00371 * 24 22 20 28 28 C 1.46753 * 109.41348 * 359.65109 * 19 18 16 29 29 C 1.53931 * 106.71772 * 342.40835 * 28 19 18 30 30 H 1.09002 * 113.01035 * 150.82946 * 29 28 19 31 31 C 1.46777 * 125.33775 * 359.69676 * 14 12 11 32 32 H 1.09001 * 109.46962 * 263.95628 * 1 2 3 33 33 H 1.09001 * 109.46569 * 143.95946 * 1 2 3 34 34 H 1.08993 * 109.47085 * 23.95852 * 1 2 3 35 35 H 1.08000 * 120.00439 * 0.02562 * 3 2 1 36 36 H 1.08000 * 119.99949 * 180.27484 * 4 3 2 37 37 H 1.07996 * 120.00243 * 179.72225 * 5 4 3 38 38 H 1.08003 * 119.99436 * 179.97438 * 6 5 4 39 39 H 1.08995 * 109.47551 * 300.00140 * 10 8 7 40 40 H 1.09006 * 109.47282 * 60.00210 * 10 8 7 41 41 H 1.09007 * 109.46809 * 179.97438 * 10 8 7 42 42 H 1.08997 * 109.47037 * 294.99778 * 11 8 7 43 43 H 1.08993 * 109.47097 * 54.99901 * 11 8 7 44 44 H 1.09002 * 109.77139 * 300.16525 * 15 14 12 45 45 H 1.08994 * 109.76912 * 60.92508 * 15 14 12 46 46 H 1.09000 * 109.76058 * 247.19851 * 18 16 15 47 47 H 1.08998 * 109.76134 * 7.91856 * 18 16 15 48 48 H 0.96995 * 120.00402 * 180.02562 * 23 22 20 49 49 H 1.08996 * 110.00772 * 223.09503 * 28 19 18 50 50 H 1.08996 * 110.00604 * 101.72074 * 28 19 18 51 51 H 1.09002 * 110.02543 * 280.77390 * 31 14 12 52 52 H 1.09002 * 110.02417 * 42.18586 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0053 5 6 4.2718 0.0001 -0.0008 6 6 3.5806 -1.1969 -0.0061 7 6 2.1981 -1.1969 -0.0057 8 6 1.4446 -2.5020 -0.0125 9 1 0.3770 -2.3057 0.0857 10 6 1.7092 -3.2368 -1.3282 11 6 1.9137 -3.3678 1.1586 12 6 1.0764 -4.6190 1.2253 13 8 0.1918 -4.8005 0.4156 14 7 1.3111 -5.5366 2.1840 15 6 0.5705 -6.7907 2.3575 16 6 1.1581 -7.5232 3.5746 17 1 0.3909 -7.9897 4.1926 18 6 2.2346 -8.5131 3.1020 19 7 3.4493 -8.2671 3.8955 20 6 4.6313 -8.9457 3.7626 21 1 5.4764 -8.6847 4.3823 22 6 4.7431 -9.9690 2.8313 23 7 3.7132 -10.2867 2.0758 24 14 6.3555 -10.8943 2.6495 25 1 6.7018 -11.5437 3.9394 26 1 6.2155 -11.9305 1.5950 27 1 7.4314 -9.9440 2.2693 28 6 3.2021 -7.1699 4.8383 29 6 1.9540 -6.4244 4.3327 30 1 1.3835 -5.9558 5.1347 31 6 2.3516 -5.4405 3.2147 32 1 -0.3633 -0.1082 1.0220 33 1 -0.3632 -0.8310 -0.6047 34 1 -0.3633 0.9391 -0.4173 35 1 1.6583 2.1327 0.0004 36 1 4.1204 2.1327 0.0098 37 1 5.3517 0.0001 -0.0011 38 1 4.1207 -2.1322 -0.0113 39 1 1.3751 -2.6200 -2.1624 40 1 2.7770 -3.4332 -1.4263 41 1 1.1646 -4.1810 -1.3329 42 1 2.9598 -3.6381 1.0144 43 1 1.8076 -2.8095 2.0886 44 1 -0.4840 -6.5753 2.5306 45 1 0.6793 -7.4094 1.4668 46 1 1.8981 -9.5349 3.2775 47 1 2.4291 -8.3665 2.0396 48 1 3.7912 -11.0019 1.4253 49 1 4.0576 -6.4948 4.8574 50 1 3.0194 -7.5695 5.8358 51 1 3.3188 -5.7185 2.7957 52 1 2.3933 -4.4253 3.6094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049096013.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:00 Heat of formation + Delta-G solvation = 7.355229 kcal Electronic energy + Delta-G solvation = -30357.549561 eV Core-core repulsion = 26514.903690 eV Total energy + Delta-G solvation = -3842.645871 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.42928 -39.72898 -38.27149 -35.23188 -34.77340 -32.89910 -32.29730 -30.70150 -29.83647 -29.43050 -27.82991 -27.01435 -25.50305 -25.36653 -23.84320 -22.81908 -21.60811 -20.19426 -20.12280 -19.28684 -18.84243 -17.29033 -16.81676 -16.44467 -16.03895 -15.60312 -15.25621 -14.95080 -14.64168 -14.40392 -14.15434 -13.81437 -13.62901 -13.53780 -13.24726 -13.10801 -12.97619 -12.70364 -12.55151 -12.45415 -12.13998 -12.03881 -11.97988 -11.73508 -11.49492 -11.45971 -11.39962 -11.20478 -10.92301 -10.83407 -10.77329 -10.57492 -10.41094 -10.12998 -10.11415 -9.86725 -9.65297 -9.50160 -8.93093 -8.70139 -8.62764 -8.28737 -6.86823 -5.74846 -3.08854 1.20362 1.24371 2.85323 3.25843 3.38224 3.42759 3.44261 3.61032 4.45956 4.47541 4.59067 4.72890 4.78282 4.82396 4.90229 4.98366 5.03332 5.12366 5.19386 5.23756 5.35320 5.38144 5.46043 5.48039 5.52310 5.57569 5.63372 5.64192 5.65613 5.70017 5.72864 5.86119 5.90099 5.96821 5.99472 6.04549 6.12783 6.17085 6.27717 6.34324 6.36234 6.37691 6.44070 6.53946 6.56417 6.58813 6.64296 6.79526 6.87737 7.53132 7.55298 7.78431 7.81794 8.22820 8.40408 9.18305 9.79318 10.42958 11.36534 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013953 B = 0.002643 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.299644 B =10592.682360 C =11339.315688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.083 4.083 3 C -0.121 4.121 4 C -0.124 4.124 5 C -0.124 4.124 6 C -0.110 4.110 7 C -0.073 4.073 8 C -0.039 4.039 9 H 0.091 0.909 10 C -0.149 4.149 11 C -0.128 4.128 12 C 0.527 3.473 13 O -0.547 6.547 14 N -0.608 5.608 15 C 0.121 3.879 16 C -0.124 4.124 17 H 0.090 0.910 18 C 0.185 3.815 19 N -0.603 5.603 20 C -0.231 4.231 21 H 0.078 0.922 22 C -0.006 4.006 23 N -0.921 5.921 24 Si 0.912 3.088 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.146 3.854 29 C -0.111 4.111 30 H 0.088 0.912 31 C 0.112 3.888 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.046 0.954 47 H 0.050 0.950 48 H 0.253 0.747 49 H 0.036 0.964 50 H 0.021 0.979 51 H 0.078 0.922 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.873 21.040 -1.451 21.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.083 4.083 3 C -0.139 4.139 4 C -0.142 4.142 5 C -0.142 4.142 6 C -0.128 4.128 7 C -0.073 4.073 8 C -0.058 4.058 9 H 0.109 0.891 10 C -0.206 4.206 11 C -0.168 4.168 12 C 0.316 3.684 13 O -0.425 6.425 14 N -0.341 5.341 15 C -0.002 4.002 16 C -0.144 4.144 17 H 0.108 0.892 18 C 0.061 3.939 19 N -0.330 5.330 20 C -0.360 4.360 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.020 3.980 29 C -0.131 4.131 30 H 0.106 0.894 31 C -0.011 4.011 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.055 0.945 50 H 0.039 0.961 51 H 0.096 0.904 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.274 20.801 -2.083 21.560 hybrid contribution 1.078 -0.513 -0.016 1.194 sum -4.196 20.288 -2.099 20.823 Atomic orbital electron populations 1.20866 0.91355 1.02774 1.02578 1.19790 0.96013 0.92563 0.99885 1.21003 0.94274 0.97270 1.01369 1.21101 0.94299 0.97979 1.00826 1.21128 0.99841 0.92514 1.00726 1.21057 0.93692 0.98254 0.99820 1.19776 0.93657 0.94261 0.99647 1.19962 1.00197 0.90620 0.95012 0.89099 1.21953 1.01682 1.01610 0.95316 1.21716 1.00684 0.94095 1.00316 1.20206 0.84358 0.84109 0.79739 1.90643 1.33694 1.78456 1.39729 1.48305 1.34971 1.20536 1.30238 1.21804 0.94819 0.84581 0.98993 1.23162 0.99132 0.97048 0.95008 0.89178 1.21206 0.82945 0.94675 0.95094 1.44344 1.10628 1.37556 1.40465 1.18982 0.88577 1.11458 1.16949 0.90455 1.24799 0.97745 0.99131 0.98593 1.69939 1.28849 1.32419 1.25587 0.86206 0.82813 0.79421 0.77337 1.21144 1.21609 1.21187 1.21141 0.93541 0.90009 0.93324 1.22929 0.98224 0.95368 0.96560 0.89360 1.22108 0.91939 0.98925 0.88136 0.91113 0.90840 0.91753 0.86318 0.86359 0.86192 0.85943 0.92970 0.93076 0.90042 0.88808 0.89112 0.92425 0.90959 0.93556 0.93187 0.93629 0.94542 0.96146 0.90353 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.14 36.01 0.33 -0.68 16 2 C -0.08 -0.83 5.88 -104.62 -0.62 -1.45 16 3 C -0.12 -1.11 9.68 -39.58 -0.38 -1.50 16 4 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 5 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 6 C -0.11 -1.16 8.79 -39.58 -0.35 -1.50 16 7 C -0.07 -0.80 4.78 -104.63 -0.50 -1.30 16 8 C -0.04 -0.46 1.94 -91.77 -0.18 -0.64 16 9 H 0.09 1.11 5.53 -51.93 -0.29 0.82 16 10 C -0.15 -1.86 8.80 37.16 0.33 -1.54 16 11 C -0.13 -1.57 3.87 -27.88 -0.11 -1.67 16 12 C 0.53 8.31 7.55 -10.99 -0.08 8.22 16 13 O -0.55 -10.04 14.27 5.55 0.08 -9.96 16 14 N -0.61 -9.82 3.31 -172.17 -0.57 -10.39 16 15 C 0.12 2.06 6.23 -3.57 -0.02 2.03 16 16 C -0.12 -2.18 4.01 -88.60 -0.36 -2.53 16 17 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 18 C 0.19 4.30 4.77 -3.32 -0.02 4.28 16 19 N -0.60 -14.61 3.39 -171.50 -0.58 -15.19 16 20 C -0.23 -6.23 10.25 -15.06 -0.15 -6.38 16 21 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 22 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 23 N -0.92 -26.56 10.25 55.49 0.57 -25.99 16 24 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 28 C 0.15 2.78 6.41 -3.42 -0.02 2.76 16 29 C -0.11 -1.75 4.14 -88.25 -0.37 -2.11 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 31 C 0.11 1.68 5.88 -3.29 -0.02 1.66 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.66 6.54 -51.93 -0.34 0.32 16 34 H 0.06 0.45 8.04 -51.93 -0.42 0.03 16 35 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.12 1.21 7.18 -52.48 -0.38 0.83 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.61 7.73 -51.93 -0.40 0.21 16 41 H 0.08 1.22 5.95 -51.92 -0.31 0.91 16 42 H 0.09 1.10 7.30 -51.93 -0.38 0.72 16 43 H 0.09 0.98 7.88 -51.93 -0.41 0.57 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.07 1.38 7.44 -51.93 -0.39 0.99 16 46 H 0.05 1.21 7.40 -51.93 -0.38 0.82 16 47 H 0.05 1.31 6.58 -51.93 -0.34 0.97 16 48 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 49 H 0.04 0.67 7.97 -51.93 -0.41 0.25 16 50 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.08 1.36 7.76 -51.93 -0.40 0.96 16 52 H 0.06 0.78 7.61 -51.93 -0.40 0.39 16 LS Contribution 399.86 15.07 6.03 6.03 Total: -1.00 -31.11 399.86 -11.50 -42.61 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -8.59 Total: 1.86 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -3.40 Total: -5.70 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.58 Total: -51.57 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.11 -11.50 -42.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049096013.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.961 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds