Wall clock time and date at job start Wed Apr 1 2020 02:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38254 * 119.99844 * 2 1 4 4 C 1.38222 * 120.00114 * 179.74402 * 3 2 1 5 5 C 1.38253 * 119.99674 * 0.54932 * 4 3 2 6 6 C 1.38223 * 119.99745 * 359.70350 * 5 4 3 7 7 C 1.38215 * 120.00206 * 180.27238 * 2 1 3 8 8 C 1.50699 * 119.99812 * 0.02562 * 7 2 1 9 9 H 1.08997 * 109.47167 * 354.54949 * 8 7 2 10 10 C 1.53000 * 109.46907 * 114.55012 * 8 7 2 11 11 C 1.53002 * 109.46983 * 234.55198 * 8 7 2 12 12 C 1.50699 * 109.47114 * 175.00295 * 11 8 7 13 13 O 1.21290 * 119.99840 * 0.02562 * 12 11 8 14 14 N 1.34770 * 120.00281 * 179.97438 * 12 11 8 15 15 C 1.46674 * 125.33963 * 179.97438 * 14 12 11 16 16 C 1.53726 * 107.94159 * 180.54621 * 15 14 12 17 17 H 1.09004 * 112.56006 * 139.71620 * 16 15 14 18 18 C 1.53691 * 109.34163 * 266.25216 * 16 15 14 19 19 N 1.47170 * 107.73302 * 128.69787 * 18 16 15 20 20 C 1.36938 * 125.25703 * 180.39988 * 19 18 16 21 21 H 1.07999 * 120.00106 * 179.13188 * 20 19 18 22 22 C 1.38817 * 119.99544 * 359.13378 * 20 19 18 23 23 N 1.31618 * 120.00260 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99746 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47052 * 60.00409 * 24 22 20 26 26 H 1.48505 * 109.47081 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47358 * 300.00371 * 24 22 20 28 28 C 1.46753 * 109.41348 * 359.65109 * 19 18 16 29 29 C 1.53931 * 106.71772 * 342.40835 * 28 19 18 30 30 H 1.09002 * 113.01035 * 150.82946 * 29 28 19 31 31 C 1.46777 * 125.33775 * 359.69676 * 14 12 11 32 32 H 1.09001 * 109.46962 * 263.95628 * 1 2 3 33 33 H 1.09001 * 109.46569 * 143.95946 * 1 2 3 34 34 H 1.08993 * 109.47085 * 23.95852 * 1 2 3 35 35 H 1.08000 * 120.00439 * 0.02562 * 3 2 1 36 36 H 1.08000 * 119.99949 * 180.27484 * 4 3 2 37 37 H 1.07996 * 120.00243 * 179.72225 * 5 4 3 38 38 H 1.08003 * 119.99436 * 179.97438 * 6 5 4 39 39 H 1.08995 * 109.47551 * 300.00140 * 10 8 7 40 40 H 1.09006 * 109.47282 * 60.00210 * 10 8 7 41 41 H 1.09007 * 109.46809 * 179.97438 * 10 8 7 42 42 H 1.08997 * 109.47037 * 294.99778 * 11 8 7 43 43 H 1.08993 * 109.47097 * 54.99901 * 11 8 7 44 44 H 1.09002 * 109.77139 * 300.16525 * 15 14 12 45 45 H 1.08994 * 109.76912 * 60.92508 * 15 14 12 46 46 H 1.09000 * 109.76058 * 247.19851 * 18 16 15 47 47 H 1.08998 * 109.76134 * 7.91856 * 18 16 15 48 48 H 0.96995 * 120.00402 * 180.02562 * 23 22 20 49 49 H 1.08996 * 110.00772 * 223.09503 * 28 19 18 50 50 H 1.08996 * 110.00604 * 101.72074 * 28 19 18 51 51 H 1.09002 * 110.02543 * 280.77390 * 31 14 12 52 52 H 1.09002 * 110.02417 * 42.18586 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0053 5 6 4.2718 0.0001 -0.0008 6 6 3.5806 -1.1969 -0.0061 7 6 2.1981 -1.1969 -0.0057 8 6 1.4446 -2.5020 -0.0125 9 1 0.3770 -2.3057 0.0857 10 6 1.7092 -3.2368 -1.3282 11 6 1.9137 -3.3678 1.1586 12 6 1.0764 -4.6190 1.2253 13 8 0.1918 -4.8005 0.4156 14 7 1.3111 -5.5366 2.1840 15 6 0.5705 -6.7907 2.3575 16 6 1.1581 -7.5232 3.5746 17 1 0.3909 -7.9897 4.1926 18 6 2.2346 -8.5131 3.1020 19 7 3.4493 -8.2671 3.8955 20 6 4.6313 -8.9457 3.7626 21 1 5.4764 -8.6847 4.3823 22 6 4.7431 -9.9690 2.8313 23 7 3.7132 -10.2867 2.0758 24 14 6.3555 -10.8943 2.6495 25 1 6.7018 -11.5437 3.9394 26 1 6.2155 -11.9305 1.5950 27 1 7.4314 -9.9440 2.2693 28 6 3.2021 -7.1699 4.8383 29 6 1.9540 -6.4244 4.3327 30 1 1.3835 -5.9558 5.1347 31 6 2.3516 -5.4405 3.2147 32 1 -0.3633 -0.1082 1.0220 33 1 -0.3632 -0.8310 -0.6047 34 1 -0.3633 0.9391 -0.4173 35 1 1.6583 2.1327 0.0004 36 1 4.1204 2.1327 0.0098 37 1 5.3517 0.0001 -0.0011 38 1 4.1207 -2.1322 -0.0113 39 1 1.3751 -2.6200 -2.1624 40 1 2.7770 -3.4332 -1.4263 41 1 1.1646 -4.1810 -1.3329 42 1 2.9598 -3.6381 1.0144 43 1 1.8076 -2.8095 2.0886 44 1 -0.4840 -6.5753 2.5306 45 1 0.6793 -7.4094 1.4668 46 1 1.8981 -9.5349 3.2775 47 1 2.4291 -8.3665 2.0396 48 1 3.7912 -11.0019 1.4253 49 1 4.0576 -6.4948 4.8574 50 1 3.0194 -7.5695 5.8358 51 1 3.3188 -5.7185 2.7957 52 1 2.3933 -4.4253 3.6094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049096013.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:58 Heat of formation + Delta-G solvation = -8.154330 kcal Electronic energy + Delta-G solvation = -30358.222106 eV Core-core repulsion = 26514.903690 eV Total energy + Delta-G solvation = -3843.318416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.63551 -40.67902 -39.58470 -36.62815 -35.93737 -34.11405 -33.58765 -32.13597 -31.07307 -30.72028 -29.00616 -27.69300 -27.11437 -26.99318 -24.91239 -24.12170 -22.40404 -21.81989 -21.11479 -20.70346 -20.02444 -18.85149 -18.24982 -17.63614 -16.97861 -16.73979 -16.60483 -16.20115 -15.87022 -15.62156 -15.49185 -14.98482 -14.76122 -14.70897 -14.53383 -14.09744 -14.00834 -13.90928 -13.69481 -13.53738 -13.34848 -13.26777 -13.16161 -13.04860 -12.90740 -12.75445 -12.67774 -12.60809 -12.17953 -12.16380 -12.02047 -11.87289 -11.84743 -11.62161 -11.50218 -11.42061 -11.33722 -10.80200 -10.65246 -9.65368 -9.61239 -9.42670 -8.86279 -7.84116 -5.18861 0.47903 0.53318 1.45491 1.48134 1.54411 1.61262 2.03897 2.50139 2.88493 3.29829 3.34591 3.54302 3.65715 3.75034 3.84810 3.93851 4.03721 4.07199 4.12131 4.17772 4.28135 4.31131 4.33374 4.45879 4.49866 4.53726 4.58181 4.60528 4.65013 4.74639 4.81358 4.82025 4.86104 4.86520 4.94830 4.95826 5.02552 5.06847 5.11314 5.17400 5.25321 5.27824 5.34649 5.39076 5.41683 5.49421 5.64588 5.65631 5.68456 5.78351 5.82353 6.18288 6.21632 6.56193 7.11418 7.15245 7.81355 8.43087 9.25765 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013953 B = 0.002643 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.299644 B =10592.682360 C =11339.315688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.093 4.093 3 C -0.126 4.126 4 C -0.126 4.126 5 C -0.132 4.132 6 C -0.122 4.122 7 C -0.085 4.085 8 C -0.032 4.032 9 H 0.086 0.914 10 C -0.145 4.145 11 C -0.119 4.119 12 C 0.522 3.478 13 O -0.578 6.578 14 N -0.612 5.612 15 C 0.125 3.875 16 C -0.113 4.113 17 H 0.112 0.888 18 C 0.199 3.801 19 N -0.624 5.624 20 C -0.237 4.237 21 H 0.086 0.914 22 C -0.068 4.068 23 N -0.952 5.952 24 Si 0.975 3.025 25 H -0.275 1.275 26 H -0.300 1.300 27 H -0.277 1.277 28 C 0.139 3.861 29 C -0.093 4.093 30 H 0.134 0.866 31 C 0.114 3.886 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.135 0.865 38 H 0.122 0.878 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.099 0.901 43 H 0.114 0.886 44 H 0.076 0.924 45 H 0.038 0.962 46 H 0.004 0.996 47 H 0.006 0.994 48 H 0.244 0.756 49 H 0.048 0.952 50 H 0.031 0.969 51 H 0.050 0.950 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.430 24.311 0.389 24.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.093 4.093 3 C -0.144 4.144 4 C -0.143 4.143 5 C -0.150 4.150 6 C -0.140 4.140 7 C -0.085 4.085 8 C -0.050 4.050 9 H 0.104 0.896 10 C -0.202 4.202 11 C -0.158 4.158 12 C 0.313 3.687 13 O -0.458 6.458 14 N -0.344 5.344 15 C 0.002 3.998 16 C -0.133 4.133 17 H 0.131 0.869 18 C 0.074 3.926 19 N -0.351 5.351 20 C -0.366 4.366 21 H 0.104 0.896 22 C -0.261 4.261 23 N -0.602 5.602 24 Si 0.803 3.197 25 H -0.201 1.201 26 H -0.226 1.226 27 H -0.203 1.203 28 C 0.014 3.986 29 C -0.113 4.113 30 H 0.152 0.848 31 C -0.008 4.008 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.153 0.847 38 H 0.140 0.860 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.117 0.883 43 H 0.133 0.867 44 H 0.095 0.905 45 H 0.056 0.944 46 H 0.023 0.977 47 H 0.025 0.975 48 H 0.053 0.947 49 H 0.067 0.933 50 H 0.049 0.951 51 H 0.068 0.932 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.815 24.108 -0.200 24.585 hybrid contribution 0.959 -1.499 -0.596 1.876 sum -3.856 22.609 -0.796 22.950 Atomic orbital electron populations 1.20878 0.90549 1.03231 1.02821 1.20018 0.96803 0.92659 0.99779 1.21298 0.94634 0.97758 1.00699 1.21433 0.94484 0.98732 0.99698 1.21378 1.00785 0.92406 1.00459 1.21160 0.93687 0.98822 1.00368 1.19685 0.93813 0.93898 1.01145 1.19841 1.00095 0.91048 0.94046 0.89622 1.21883 1.01273 1.00473 0.96562 1.21727 0.99981 0.92439 1.01695 1.20886 0.84178 0.84827 0.78838 1.90633 1.35241 1.79267 1.40686 1.48416 1.35076 1.20076 1.30850 1.21642 0.96035 0.84813 0.97316 1.22999 0.98089 0.96439 0.95783 0.86949 1.20839 0.84520 0.94245 0.93031 1.44647 1.10096 1.38848 1.41480 1.19418 0.89849 1.11132 1.16223 0.89608 1.25628 1.00821 1.00635 0.99009 1.70192 1.30749 1.32861 1.26373 0.85201 0.79354 0.77971 0.77128 1.20132 1.22629 1.20260 1.21379 0.95651 0.88992 0.92541 1.22986 0.96415 0.94373 0.97486 0.84801 1.22133 0.90141 1.01082 0.87433 0.90631 0.91812 0.90196 0.84278 0.84126 0.84701 0.86032 0.92343 0.92924 0.92876 0.88297 0.86746 0.90529 0.94375 0.97744 0.97538 0.94703 0.93343 0.95119 0.93180 0.87410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 9.14 71.24 0.65 -1.15 16 2 C -0.09 -1.69 5.88 -19.87 -0.12 -1.80 16 3 C -0.13 -1.97 9.68 22.27 0.22 -1.76 16 4 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 5 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 6 C -0.12 -2.38 8.79 22.27 0.20 -2.18 16 7 C -0.09 -1.73 4.78 -19.87 -0.10 -1.83 16 8 C -0.03 -0.72 1.94 -11.54 -0.02 -0.74 16 9 H 0.09 2.04 5.53 -2.39 -0.01 2.03 16 10 C -0.14 -3.71 8.80 71.98 0.63 -3.07 16 11 C -0.12 -2.73 3.87 29.85 0.12 -2.62 16 12 C 0.52 16.21 7.55 87.66 0.66 16.87 16 13 O -0.58 -21.61 14.27 -3.06 -0.04 -21.66 16 14 N -0.61 -19.19 3.31 -817.02 -2.71 -21.90 16 15 C 0.13 4.27 6.23 86.59 0.54 4.81 16 16 C -0.11 -3.91 4.01 -9.49 -0.04 -3.94 16 17 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16 18 C 0.20 9.60 4.77 86.48 0.41 10.02 16 19 N -0.62 -30.54 3.39 -696.51 -2.36 -32.90 16 20 C -0.24 -12.92 10.25 84.03 0.86 -12.05 16 21 H 0.09 4.41 7.83 -2.91 -0.02 4.38 16 22 C -0.07 -3.86 5.48 84.86 0.47 -3.40 16 23 N -0.95 -57.83 10.25 21.65 0.22 -57.61 16 24 Si 0.97 45.70 29.55 68.60 2.03 47.73 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 26 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 27 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 28 C 0.14 5.01 6.41 86.65 0.56 5.57 16 29 C -0.09 -2.64 4.14 -9.26 -0.04 -2.68 16 30 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 31 C 0.11 3.16 5.88 86.71 0.51 3.67 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.09 6.54 -2.39 -0.02 1.07 16 34 H 0.08 0.93 8.04 -2.39 -0.02 0.92 16 35 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 36 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 37 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.12 2.29 7.18 -2.91 -0.02 2.27 16 39 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.05 1.29 7.73 -2.38 -0.02 1.27 16 41 H 0.05 1.66 5.95 -2.38 -0.01 1.65 16 42 H 0.10 2.20 7.30 -2.39 -0.02 2.19 16 43 H 0.11 2.11 7.88 -2.39 -0.02 2.09 16 44 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.04 1.55 7.44 -2.39 -0.02 1.53 16 46 H 0.00 0.24 7.40 -2.39 -0.02 0.22 16 47 H 0.01 0.36 6.58 -2.39 -0.02 0.35 16 48 H 0.24 14.60 8.31 -92.71 -0.77 13.83 16 49 H 0.05 1.64 7.97 -2.39 -0.02 1.62 16 50 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.05 1.69 7.76 -2.39 -0.02 1.67 16 52 H 0.11 2.10 7.61 -2.39 -0.02 2.08 16 Total: -1.00 -71.65 399.86 3.99 -67.66 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.90 Total: 18.65 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 5.95 Total: 0.03 kcal Atomic # 7 Polarization: -107.56 SS G_CDS: -4.84 Total: -112.41 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.04 Total: -21.66 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -71.65 3.99 -67.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049096013.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.507 kcal (2) G-P(sol) polarization free energy of solvation -71.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds