Wall clock time and date at job start Wed Apr 1 2020 02:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38265 * 119.99639 * 2 1 4 4 C 1.38212 * 119.99735 * 179.78966 * 3 2 1 5 5 C 1.38260 * 119.99839 * 0.44343 * 4 3 2 6 6 C 1.38208 * 120.00164 * 359.81384 * 5 4 3 7 7 C 1.38203 * 120.00241 * 180.28049 * 2 1 3 8 8 C 1.50698 * 120.00197 * 359.97438 * 7 2 1 9 9 H 1.09000 * 109.47037 * 4.63564 * 8 7 2 10 10 C 1.53000 * 109.47244 * 244.63737 * 8 7 2 11 11 C 1.52998 * 109.47320 * 124.63582 * 8 7 2 12 12 C 1.50703 * 109.47158 * 185.00615 * 11 8 7 13 13 O 1.21288 * 120.00103 * 359.97438 * 12 11 8 14 14 N 1.34773 * 120.00099 * 180.02562 * 12 11 8 15 15 C 1.46673 * 125.34040 * 179.97438 * 14 12 11 16 16 C 1.53719 * 107.94224 * 180.52089 * 15 14 12 17 17 H 1.09004 * 112.56143 * 139.72210 * 16 15 14 18 18 C 1.53694 * 109.33906 * 266.24565 * 16 15 14 19 19 N 1.47175 * 107.72970 * 128.69808 * 18 16 15 20 20 C 1.36936 * 125.25489 * 180.36887 * 19 18 16 21 21 H 1.07997 * 120.00245 * 184.21056 * 20 19 18 22 22 C 1.38819 * 119.99918 * 4.21228 * 20 19 18 23 23 N 1.31619 * 119.99922 * 354.72518 * 22 20 19 24 24 Si 1.86803 * 119.99995 * 174.73134 * 22 20 19 25 25 H 1.48497 * 109.47077 * 94.99753 * 24 22 20 26 26 H 1.48502 * 109.46846 * 214.99492 * 24 22 20 27 27 H 1.48498 * 109.46722 * 334.99290 * 24 22 20 28 28 C 1.46746 * 109.41285 * 359.65166 * 19 18 16 29 29 C 1.53928 * 106.72050 * 342.40939 * 28 19 18 30 30 H 1.08998 * 113.01159 * 150.82784 * 29 28 19 31 31 C 1.46776 * 125.33709 * 359.68520 * 14 12 11 32 32 H 1.09004 * 109.46622 * 263.70662 * 1 2 3 33 33 H 1.08997 * 109.47359 * 143.71234 * 1 2 3 34 34 H 1.09001 * 109.47094 * 23.70596 * 1 2 3 35 35 H 1.08002 * 120.00133 * 0.02562 * 3 2 1 36 36 H 1.07999 * 120.00129 * 180.27843 * 4 3 2 37 37 H 1.08006 * 119.99617 * 179.82803 * 5 4 3 38 38 H 1.08001 * 120.00248 * 179.97438 * 6 5 4 39 39 H 1.09004 * 109.47154 * 180.02562 * 10 8 7 40 40 H 1.09000 * 109.46962 * 299.99873 * 10 8 7 41 41 H 1.09004 * 109.47293 * 60.00017 * 10 8 7 42 42 H 1.09002 * 109.47088 * 305.00032 * 11 8 7 43 43 H 1.08997 * 109.47382 * 64.99948 * 11 8 7 44 44 H 1.09002 * 109.76950 * 300.13952 * 15 14 12 45 45 H 1.08992 * 109.77104 * 60.89423 * 15 14 12 46 46 H 1.08998 * 109.76280 * 247.19785 * 18 16 15 47 47 H 1.08993 * 109.76173 * 7.92172 * 18 16 15 48 48 H 0.96999 * 120.00134 * 180.02562 * 23 22 20 49 49 H 1.09004 * 110.01104 * 223.08798 * 28 19 18 50 50 H 1.09002 * 110.00246 * 101.72261 * 28 19 18 51 51 H 1.08998 * 110.02990 * 280.80020 * 31 14 12 52 52 H 1.08997 * 110.02555 * 42.21630 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1975 0.0000 4 6 3.5804 1.1975 0.0044 5 6 4.2717 0.0001 -0.0005 6 6 3.5807 -1.1968 -0.0059 7 6 2.1981 -1.1968 -0.0059 8 6 1.4447 -2.5020 -0.0117 9 1 0.3759 -2.3041 -0.0934 10 6 1.7254 -3.2587 1.2882 11 6 1.8993 -3.3480 -1.2026 12 6 1.0609 -4.5979 -1.2801 13 8 0.1862 -4.7931 -0.4628 14 7 1.2838 -5.4994 -2.2568 15 6 0.5416 -6.7509 -2.4417 16 6 1.1318 -7.4756 -3.6622 17 1 1.2112 -8.5522 -3.5113 18 6 0.3249 -7.1015 -4.9156 19 7 1.2775 -6.6587 -5.9464 20 6 0.9408 -6.2360 -7.2046 21 1 1.7146 -5.9937 -7.9180 22 6 -0.3951 -6.1189 -7.5631 23 7 -1.3366 -6.5119 -6.7315 24 14 -0.8567 -5.4035 -9.2259 25 1 -1.0588 -6.5059 -10.2001 26 1 -2.1120 -4.6207 -9.0967 27 1 0.2338 -4.5153 -9.7024 28 6 2.6419 -6.7247 -5.4101 29 6 2.5125 -6.7957 -3.8779 30 1 3.3350 -7.3325 -3.4053 31 6 2.3033 -5.3798 -3.3060 32 1 -0.3633 -0.1127 1.0215 33 1 -0.3634 -0.8283 -0.6082 34 1 -0.3633 0.9410 -0.4132 35 1 1.6582 2.1328 0.0004 36 1 4.1204 2.1328 0.0089 37 1 5.3518 0.0002 0.0001 38 1 4.1207 -2.1321 -0.0101 39 1 1.1808 -4.2029 1.2837 40 1 2.7942 -3.4565 1.3699 41 1 1.4015 -2.6559 2.1367 42 1 1.7817 -2.7742 -2.1219 43 1 2.9470 -3.6205 -1.0760 44 1 0.6467 -7.3763 -1.5552 45 1 -0.5118 -6.5325 -2.6164 46 1 -0.2126 -7.9759 -5.2825 47 1 -0.3827 -6.3081 -4.6752 48 1 -2.2701 -6.4304 -6.9821 49 1 3.1988 -5.8324 -5.6965 50 1 3.1467 -7.6157 -5.7835 51 1 1.9558 -4.7059 -4.0891 52 1 3.2354 -5.0086 -2.8800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049096014.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:11 Heat of formation + Delta-G solvation = 7.709022 kcal Electronic energy + Delta-G solvation = -30387.023624 eV Core-core repulsion = 26544.393095 eV Total energy + Delta-G solvation = -3842.630529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.92 seconds Orbital eigenvalues (eV) -40.42869 -39.72280 -38.27062 -35.23440 -34.77323 -32.87765 -32.29814 -30.70072 -29.83916 -29.43640 -27.85100 -26.97965 -25.50345 -25.36794 -23.86383 -22.81372 -21.60164 -20.20128 -20.11448 -19.29024 -18.84092 -17.31354 -16.81363 -16.30589 -15.98088 -15.92471 -15.08297 -14.89990 -14.66876 -14.43105 -14.15549 -13.78226 -13.68742 -13.53064 -13.24224 -13.07539 -12.97661 -12.74708 -12.57801 -12.38666 -12.15075 -12.04331 -11.96163 -11.74815 -11.48349 -11.46308 -11.40417 -11.20266 -10.92198 -10.83213 -10.80326 -10.55487 -10.41483 -10.12769 -10.10403 -9.86126 -9.66248 -9.50002 -8.92429 -8.69082 -8.61464 -8.28446 -6.86390 -5.75849 -3.09008 1.21548 1.24958 2.85575 3.25932 3.37809 3.43458 3.45518 3.62171 4.46159 4.47699 4.59803 4.73741 4.79504 4.82162 4.91296 4.96252 5.02806 5.15355 5.18683 5.24306 5.35603 5.37955 5.46861 5.48397 5.55225 5.57461 5.59022 5.65263 5.68752 5.69851 5.73315 5.86187 5.89751 5.96917 6.00131 6.03746 6.12562 6.17338 6.27163 6.31249 6.36889 6.38594 6.40726 6.53827 6.55974 6.59494 6.64415 6.79656 6.88444 7.51940 7.56974 7.78594 7.82036 8.22606 8.40544 9.18045 9.79243 10.43130 11.35808 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011958 B = 0.002786 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.036327 B =10046.500379 C =10893.942157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.080 4.080 3 C -0.120 4.120 4 C -0.124 4.124 5 C -0.125 4.125 6 C -0.111 4.111 7 C -0.073 4.073 8 C -0.041 4.041 9 H 0.093 0.907 10 C -0.146 4.146 11 C -0.129 4.129 12 C 0.527 3.473 13 O -0.547 6.547 14 N -0.607 5.607 15 C 0.121 3.879 16 C -0.124 4.124 17 H 0.090 0.910 18 C 0.185 3.815 19 N -0.603 5.603 20 C -0.231 4.231 21 H 0.078 0.922 22 C -0.005 4.005 23 N -0.919 5.919 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.146 3.854 29 C -0.111 4.111 30 H 0.088 0.912 31 C 0.112 3.888 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.043 0.957 47 H 0.053 0.947 48 H 0.253 0.747 49 H 0.037 0.963 50 H 0.020 0.980 51 H 0.079 0.921 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.235 9.929 15.399 20.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.080 4.080 3 C -0.138 4.138 4 C -0.142 4.142 5 C -0.143 4.143 6 C -0.129 4.129 7 C -0.073 4.073 8 C -0.060 4.060 9 H 0.111 0.889 10 C -0.203 4.203 11 C -0.168 4.168 12 C 0.316 3.684 13 O -0.425 6.425 14 N -0.340 5.340 15 C -0.002 4.002 16 C -0.143 4.143 17 H 0.108 0.892 18 C 0.060 3.940 19 N -0.330 5.330 20 C -0.360 4.360 21 H 0.096 0.904 22 C -0.202 4.202 23 N -0.566 5.566 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 C 0.020 3.980 29 C -0.131 4.131 30 H 0.106 0.894 31 C -0.011 4.011 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.055 0.945 50 H 0.038 0.962 51 H 0.097 0.903 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.548 9.917 15.760 20.926 hybrid contribution -0.141 0.410 -1.054 1.140 sum 9.407 10.327 14.706 20.283 Atomic orbital electron populations 1.20887 0.91256 1.02973 1.02583 1.19813 0.96111 0.92571 0.99548 1.21022 0.94282 0.97337 1.01159 1.21098 0.94306 0.97984 1.00788 1.21100 0.99728 0.92547 1.00960 1.20994 0.93636 0.98082 1.00193 1.19763 0.93641 0.94283 0.99659 1.19985 1.00543 0.90710 0.94745 0.88910 1.21930 1.01240 1.01499 0.95613 1.21721 1.00242 0.94351 1.00530 1.20206 0.84337 0.83976 0.79889 1.90643 1.34011 1.77574 1.40299 1.48303 1.35937 1.21403 1.28395 1.21801 0.96668 0.84404 0.97317 1.23154 0.95511 0.98943 0.96734 0.89193 1.21216 0.90125 0.98991 0.83669 1.44345 0.99749 1.77404 1.11501 1.19025 0.91573 1.37706 0.87656 0.90393 1.24818 0.95667 1.01303 0.98415 1.69960 0.99366 1.51812 1.35468 0.86136 0.77827 0.78759 0.83258 1.21649 1.21657 1.20619 1.21147 0.89211 0.98351 0.89324 1.22920 0.97689 0.94538 0.97905 0.89371 1.22103 0.90460 0.98476 0.90062 0.91078 0.90732 0.91650 0.86249 0.86348 0.86271 0.86139 0.90145 0.93311 0.92963 0.88821 0.89085 0.92421 0.90961 0.93888 0.92862 0.93696 0.94478 0.96198 0.90327 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.26 36.01 0.33 -0.82 16 2 C -0.08 -0.86 5.88 -104.62 -0.62 -1.48 16 3 C -0.12 -1.16 9.68 -39.58 -0.38 -1.55 16 4 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 5 C -0.13 -1.16 10.05 -39.58 -0.40 -1.56 16 6 C -0.11 -1.11 8.78 -39.58 -0.35 -1.46 16 7 C -0.07 -0.81 4.78 -104.63 -0.50 -1.31 16 8 C -0.04 -0.49 2.02 -91.77 -0.19 -0.67 16 9 H 0.09 1.20 5.37 -51.93 -0.28 0.92 16 10 C -0.15 -1.68 8.79 37.16 0.33 -1.35 16 11 C -0.13 -1.58 3.88 -27.88 -0.11 -1.69 16 12 C 0.53 8.33 7.55 -10.99 -0.08 8.24 16 13 O -0.55 -10.06 14.27 5.55 0.08 -9.98 16 14 N -0.61 -9.84 3.31 -172.19 -0.57 -10.41 16 15 C 0.12 2.06 6.23 -3.57 -0.02 2.04 16 16 C -0.12 -2.17 4.01 -88.61 -0.36 -2.53 16 17 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 18 C 0.18 4.28 4.77 -3.31 -0.02 4.27 16 19 N -0.60 -14.64 3.39 -171.50 -0.58 -15.22 16 20 C -0.23 -6.24 10.24 -15.06 -0.15 -6.40 16 21 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 22 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 23 N -0.92 -26.54 10.27 55.49 0.57 -25.97 16 24 Si 0.91 21.78 29.56 -169.99 -5.02 16.76 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 C 0.15 2.78 6.41 -3.42 -0.02 2.76 16 29 C -0.11 -1.74 4.14 -88.27 -0.37 -2.10 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 31 C 0.11 1.69 5.88 -3.30 -0.02 1.67 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.78 6.36 -51.93 -0.33 0.45 16 34 H 0.06 0.54 8.04 -51.93 -0.42 0.12 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 38 H 0.12 1.05 7.17 -52.49 -0.38 0.67 16 39 H 0.08 1.09 5.95 -51.93 -0.31 0.79 16 40 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.09 0.94 7.07 -51.93 -0.37 0.58 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.07 1.38 7.44 -51.93 -0.39 1.00 16 46 H 0.04 1.12 7.54 -51.93 -0.39 0.73 16 47 H 0.05 1.40 6.45 -51.93 -0.33 1.07 16 48 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.04 0.68 7.97 -51.93 -0.41 0.27 16 50 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.08 1.38 7.76 -51.93 -0.40 0.98 16 52 H 0.06 0.77 7.61 -51.93 -0.40 0.38 16 LS Contribution 399.73 15.07 6.02 6.02 Total: -1.00 -31.23 399.73 -11.49 -42.72 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -8.58 Total: 1.77 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -3.41 Total: -5.70 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.58 Total: -51.59 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.23 -11.49 -42.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049096014.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.431 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.92 seconds